PEG-4MAL hydrogels for human organoid generation, culture, and in vivo delivery
Open accessAbstract
In vitro differentiation of human pluripotent stem cell (hPSC)-derived organoids (HOs) facilitates the production of multicellular three-dimensional structures analogous to native human tissues. Most current methods for the generation of HOs rely on Matrigel, a poorly defined basement membrane derivative secreted by Engelbreth-Holm-Swarm mouse sarcoma cells, limiting the potential use of HOs for regenerative medicine applications. Here, we describe a protocol for the synthesis of a fully defined, synthetic hydrogel that supports the generation and culture of HOs. Modular, cell-encapsulating hydrogels are formed from a four-armed poly(ethylene glycol) macromer that has maleimide groups at each terminus (PEG-4MAL) and is conjugated to cysteine-containing adhesive peptides and cross-linked via protease-degradable peptides. The protocol also includes guidelines for the localized in vivo delivery of PEG-4MAL hydrogel-encapsulated HOs to injured mouse colon. The PEG-4MAL hydrogel supports the engraftment of the HOs and accelerates colonic wound repair. This culture and delivery strategy can thus be used to develop HO-based therapies to treat injury and disease. Hydrogel and tissue preparation and subsequent encapsulation can be performed within 2.5-3.5 h. Once HOs have been cultured in synthetic hydrogels for at least 14 d, they can be prepared and delivered to the mouse colon in under 5 h.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
When PEG was crosslinked with dithiothreitol to inhibit matrix degradation, organoid viability at seven days was poor as measured by live-dead staining.
“Intriguingly, when PEG was crosslinked with dithiothreitol to inhibit matrix degradation, organoid viability at seven days was poor as measured by live-dead staining.”
From Towards organoid culture without Matrigel (2021) · cites this paper as [164]
Organoid viability was reduced at high PEG density and matrix stiffness.
“Organoid viability was reduced at high PEG density and matrix stiffness;”
From Towards organoid culture without Matrigel (2021) · cites this paper as [164]
RGD- or AG73-functionalized PEG matrices promoted greater organoid viability than laminin-derived IKVAV- or type I collagen-derived GFOGER peptides.
“RGD- or AG73 (CGGRKRLQVQLSIRT)-functionalized PEG matrices promoted greater organoid viability than laminin-derived IKVAV- or type I collagen-derived GFOGER peptides163,164.”
From Towards organoid culture without Matrigel (2021) · cites this paper as [164]
PEG-based materials may need to be soft and degradable in order to support differentiated intestinal organoids.
“Cruz-Acuna and colleagues also found that PEG-based materials may need to be soft and degradable in order to support differentiated intestinal organoids.”
From Towards organoid culture without Matrigel (2021) · cites this paper as [164]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Organoid Models and Applications in Biomedical Research
Xinaris, C., Brizi, V., & Remuzzi, G. (2015) · The Nephron journals/Nephron journals · doi:10.1159/000433566 · Cited by 3,517 · see citing works
Modeling Development and Disease with Organoids
Clevers, H. (2016) · Cell · doi:10.1016/j.cell.2016.05.082 · Cited by 3,196 · see citing works
Extracellular Matrix Degradation and Remodeling in Development and Disease
Lu, P., Takai, K., Weaver, V. M., & Werb, Z. (2011) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a005058 · Cited by 2,265 · see citing works
Directed differentiation of human pluripotent stem cells into intestinal tissue in vitro
Spence, J. R., Mayhew, C. N., Rankin, S. A., Kuhar, M. F., Vallance, J. E., Tolle, K. A., Hoskins, E. E., Kalinichenko, V. V., Wells, S. I., Zorn, A. M., et al. (2010) · Nature · doi:10.1038/nature09691 · Cited by 1,911 · see citing works
Self-citationGeneration of cerebral organoids from human pluripotent stem cells
Lancaster, M. A., & Knoblich, J. A. (2014) · Nature Protocols · doi:10.1038/nprot.2014.158 · Cited by 1,766 · see citing works
Matrigel: A complex protein mixture required for optimal growth of cell culture
Hughes, C. S., Postovit, L. M., & Lajoie, G. A. (2010) · PROTEOMICS · doi:10.1002/pmic.200900758 · Cited by 1,534 · see citing works
Organoids as an in vitro model of human development and disease
Fatehullah, A., Tan, S. H., & Barker, N. (2016) · Nature Cell Biology · doi:10.1038/ncb3312 · Cited by 1,508 · see citing works
Bioactive modification of poly (ethylene glycol) hydrogels for tissue engineering
Zhu, J. (2010) · Biomaterials · doi:10.1016/j.biomaterials.2010.02.044 · Cited by 1,457 · see citing works
Self-formation of optic cups and storable stratified neural retina from human ESCs
Nakano, T., Ando, S., Takata, N., Kawada, M., Muguruma, K., Sekiguchi, K., Saito, K., Yonemura, S., Eiraku, M., & Sasai, Y. (2012) · Cell stem cell · doi:10.1016/j.stem.2012.05.009 · Cited by 1,447 · see citing works
Designer matrices for intestinal stem cell and organoid culture
Gjorevski, N., Sachs, N., Manfrin, A., Giger, S., Bragina, M. E., Ordóñez-Morán, P., Clevers, H., & Lutolf, M. P. (2016) · Nature · doi:10.1038/nature20168 · Cited by 1,426 · see citing works
Broutier, L., Andersson-Rolf, A., Hindley, C. J., Boj, S. F., Clevers, H., Koo, B.-K., & Huch, M. (2016) · Nature Protocols · doi:10.1038/nprot.2016.097 · Cited by 834 · see citing works
In vitro generation of human pluripotent stem cell derived lung organoids
Dye, B. R., Hill, D. R., Ferguson, M. A. H., Tsai, Y.-H., Nagy, M. S., Dyal, R., Wells, J. M., Mayhew, C. N., Nattiv, R., Klein, O. D., et al. (2015) · eLife · doi:10.7554/elife.05098 · Cited by 824 · see citing works
Self-citationIn vitro expansion and genetic modification of gastrointestinal stem cells in spheroid culture
Miyoshi, H., & Stappenbeck, T. S. (2013) · Nature Protocols · doi:10.1038/nprot.2013.153 · Cited by 724 · see citing works
Synthetic hydrogels for human intestinal organoid generation and colonic wound repair
Cruz-Acuña, R., Quirós, M., Farkas, A. E., Dedhia, P. H., Huang, S., Siuda, D., García-Hernández, V., Miller, A. J., Spence, J. R., Nusrat, A., et al. (2017) · Nature Cell Biology · doi:10.1038/ncb3632 · Cited by 558 · see citing works
Self-citationPhelps, E. A., Enemchukwu, N. O., Fiore, V. F., Sy, J. C., Murthy, N., Sulchek, T., Barker, T. H., & Garcı́a, A. J. (2011) · Advanced Materials · doi:10.1002/adma.201103574 · Cited by 541 · see citing works
Self-citationChapter 8 Quantitation of Protein
Noble, J. E., & Bailey, M. J. A. (2009) · Methods in Enzymology · doi:10.1016/s0076-6879(09)63008-1 · Cited by 492 · see citing works
Generating human intestinal tissue from pluripotent stem cells in vitro
McCracken, K. W., Howell, J. C., Wells, J. M., & Spence, J. R. (2011) · Nature Protocols · doi:10.1038/nprot.2011.410 · Cited by 433 · see citing works
Self-citationLeoni, G., Neumann, P., Kamaly, N., Quirós, M., Nishio, H., Jones, H. R., Sumagin, R., Hilgarth, R., Alam, A. M., Fredman, G., et al. (2015) · Journal of Clinical Investigation · doi:10.1172/jci76693 · Cited by 355 · see citing works
Self-citationGeneration of kidney organoids from human pluripotent stem cells
Takasato, M., Er, P. X., Chiu, H. S., & Little, M. H. (2016) · Nature Protocols · doi:10.1038/nprot.2016.098 · Cited by 334 · see citing works
SCID Mouse Models of Human Stem Cell Engraftment
Greiner, D. L., Hesselton, R. A. M., & Shultz, L. D. (1998) · Stem Cells · doi:10.1002/stem.160166 · Cited by 326 · see citing works
Miller, A. J., Hill, D. R., Nagy, M. S., Aoki, Y., Dye, B. R., Chin, A. M., Huang, S., Zhu, F., White, E. S., Lama, V. N., et al. (2017) · Stem Cell Reports · doi:10.1016/j.stemcr.2017.11.012 · Cited by 235 · see citing works
Self-citationCellular Encapsulation Enhances Cardiac Repair
Levit, R. D., Landázuri, N., Phelps, E. A., Brown, M. E., Garcı́a, A. J., Davis, M. E., Joseph, G., Long, R. C., Safley, S. A., Suever, J. D., et al. (2013) · Journal of the American Heart Association · doi:10.1161/jaha.113.000367 · Cited by 175 · see citing works
Self-citationWells, J. M., & Spence, J. R. (2014) · Development · doi:10.1242/dev.097386 · Cited by 174 · see citing works
Self-citationPhelps, E. A., Headen, D. M., Taylor, W. R., Thulé, P. M., & Garcı́a, A. J. (2013) · Biomaterials · doi:10.1016/j.biomaterials.2013.03.012 · Cited by 170 · see citing works
Self-citationWeaver, J. D., Headen, D. M., Aquart, J., Johnson, C. T., Shea, L. D., Shirwan, H., & García, A. J. (2017) · Science Advances · doi:10.1126/sciadv.1700184 · Cited by 170 · see citing works
Self-citationGjorevski, N., & Lütolf, M. P. (2017) · Nature Protocols · doi:10.1038/nprot.2017.095 · Cited by 154 · see citing works
Synthetic hydrogels mimicking basement membrane matrices to promote cell-matrix interactions
Cruz‐Acuña, R., & Garcı́a, A. J. (2016) · Matrix Biology · doi:10.1016/j.matbio.2016.06.002 · Cited by 130 · see citing works
Self-citationEnemchukwu, N. O., Cruz‐Acuña, R., Bongiorno, T., Johnson, C. T., García, J. R., Sulchek, T., & Garcı́a, A. J. (2015) · The Journal of Cell Biology · doi:10.1083/jcb.201506055 · Cited by 125 · see citing works
Self-citationGarcía, J. R., Campbell, P. F., Kumar, G., Langberg, J. J., Cesar, L., Wang, L., Garcı́a, A. J., & Levit, R. D. (2017) · JACC Basic to Translational Science · doi:10.1016/j.jacbts.2017.06.003 · Cited by 47 · see citing works
Self-citationBrückner, M., Lenz, P., Nowacki, T. M., Pott, F., Foell, D., & Bettenworth, D. (2014) · Journal of Visualized Experiments · doi:10.3791/51875 · Cited by 19 · see citing works
Flagged first, then by citations
Research works printed but not linked: 1
- [29]Noble JE & Bailey MJA in Methods in Enzymology, Vol. 463 (eds. Burgess Richard R. & Deutscher Murray P.) 73– 95 (Academic Press, Cambridge, MA, 2009).19892168
Cited by
Sorted by citations
Human organoids: model systems for human biology and medicine
Kim, J., Koo, B.-K., & Knoblich, J. A. (2020) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-020-0259-3 · Cited by 2,187 · see citing works
Synthetic alternatives to Matrigel
Aisenbrey, E. A., & Murphy, W. L. (2020) · Nature Reviews Materials · doi:10.1038/s41578-020-0199-8 · Cited by 1,016 · see citing works
Nicolas, J., Magli, S., Rabbachin, L., Sampaolesi, S., Nicotra, F., & Russo, L. (2020) · Biomacromolecules · doi:10.1021/acs.biomac.0c00045 · Cited by 504 · see citing works
Towards organoid culture without Matrigel
Kozlowski, M. T., Crook, C. J., & Ku, H. T. (2021) · Communications Biology · doi:10.1038/s42003-021-02910-8 · Cited by 409 · see citing works
Nonadhesive Alginate Hydrogels Support Growth of Pluripotent Stem Cell-Derived Intestinal Organoids
Capeling, M. M., Czerwinski, M., Huang, S., Tsai, Y.-H., Wu, A., Nagy, M. S., Juliar, B., Sundaram, N., Song, Y., Han, W. M., et al. (2019) · Stem Cell Reports · doi:10.1016/j.stemcr.2018.12.001 · Cited by 226 · see citing works
Self-citationPromises and challenges of organoid-guided precision medicine
Bose, S., Clevers, H., & Shen, X. (2021) · Med · doi:10.1016/j.medj.2021.08.005 · Cited by 213 · see citing works
Wang, J., Wu, Y. Q., Li, G., Zhou, F., Wu, X., Wang, M., Liu, X., Tang, H., Bai, L., Geng, Z., et al. (2024) · Advanced Materials · doi:10.1002/adma.202309875 · Cited by 190 · see citing works
In Vitro three-dimensional (3D) cell culture tools for spheroid and organoid models
Lee, S., Koo, I.-S., Hwang, H. J., & Lee, D. W. (2023) · SLAS DISCOVERY · doi:10.1016/j.slasd.2023.03.006 · Cited by 184 · see citing works
Hernandez‐Gordillo, V., Kassis, T., Lampejo, A. O., Choi, G., Gamboa, M. E., Gnecco, J. S., Brown, A., Breault, D. T., Carrier, R. L., & Griffith, L. G. (2019) · Biomaterials · doi:10.1016/j.biomaterials.2020.120125 · Cited by 177 · see citing works
A Chemically Defined Hydrogel for Human Liver Organoid Culture
Ye, S., Boeter, J. W. B., Mihajlovic, M., van Steenbeek, F. G., van Wolferen, M. E., Oosterhoff, L. A., Marsee, A., Caiazzo, M., van der Laan, L. J. W., Penning, L. C., et al. (2020) · Advanced Functional Materials · doi:10.1002/adfm.202000893 · Cited by 165 · see citing works
Rational Design of Smart Hydrogels for Biomedical Applications
Zhang, Y., & Huang, Y. (2021) · Frontiers in Chemistry · doi:10.3389/fchem.2020.615665 · Cited by 152 · see citing works
Gut organoids: mini-tissues in culture to study intestinal physiology and disease
Almeqdadi, M., Mana, M., Roper, J., & Yilmaz, Ö. H. (2019) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.00300.2017 · Cited by 151 · see citing works
Non-matrigel scaffolds for organoid cultures
Kaur, S., Kaur, I., Rawal, P., Tripathi, D. M., & Vasudevan, A. (2021) · Cancer Letters · doi:10.1016/j.canlet.2021.01.025 · Cited by 150 · see citing works
Transplantation of intestinal organoids into a mouse model of colitis
Watanabe, S., Kobayashi, S., Ogasawara, N., Okamoto, R., Nakamura, T., Watanabe, M., Jensen, K. B., & Yui, S. (2022) · Nature Protocols · doi:10.1038/s41596-021-00658-3 · Cited by 143 · see citing works
Engineering the Extracellular Matrix for Organoid Culture
Heo, J. H., Kang, D., Seo, S. J., & Jin, Y. (2022) · International Journal of Stem Cells · doi:10.15283/ijsc21190 · Cited by 116 · see citing works
Recent advances in bio-orthogonal and dynamic crosslinking of biomimetic hydrogels
Arkenberg, M. R., Nguyen, H. D., & Lin, C. (2020) · Journal of Materials Chemistry B · doi:10.1039/d0tb01429j · Cited by 113 · see citing works
ILC1 drive intestinal epithelial and matrix remodelling
Jowett, G. M., Norman, M. D. A., Yu, T. T. L., Arévalo, P. R., Hoogland, D., Lust, S. T., Read, E., Hamrud, E., Walters, N. J., Niazi, U. H. K., et al. (2020) · Nature Materials · doi:10.1038/s41563-020-0783-8 · Cited by 111 · see citing works
Engineering Hydrogels for the Development of Three-Dimensional In Vitro Models
Maji, S., & Lee, H. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23052662 · Cited by 111 · see citing works
Polymer Hydrogels to Guide Organotypic and Organoid Cultures
Magno, V., Meinhardt, A., & Werner, C. (2020) · Advanced Functional Materials · doi:10.1002/adfm.202000097 · Cited by 106 · see citing works
Wang, H., Li, J., Yu, X. Y., Yan, G., Tang, X., Sun, Y. Q., Zeng, X., & Lin, L. (2020) · Carbohydrate Polymers · doi:10.1016/j.carbpol.2020.117443 · Cited by 102 · see citing works
Dual mechanism β-amino acid polymers promoting cell adhesion
Chen, Q., Zhang, D., Zhang, W., Zhang, H., Zou, J., Chen, M., Li, J., Yuan, Y., & Liu, R. (2021) · Nature Communications · doi:10.1038/s41467-020-20858-x · Cited by 103 · see citing works
Engineered 3D hydrogels with full-length fibronectin that sequester and present growth factors
Trujillo, S., González‐García, C., Rico, P., Reid, A., Windmill, J. F. C., Dalby, M. J., & Salmerón‐Sánchez, M. (2020) · Biomaterials · doi:10.1016/j.biomaterials.2020.120104 · Cited by 102 · see citing works
Modelling metabolic diseases and drug response using stem cells and organoids
Hu, W., & Lazar, M. A. (2022) · Nature Reviews Endocrinology · doi:10.1038/s41574-022-00733-z · Cited by 98 · see citing works
Fang, G., Lu, H., de la Fuente, L. R., Law, A. M. K., Lin, G., Jin, D., & Gallego‐Ortega, D. (2021) · Advanced Science · doi:10.1002/advs.202102418 · Cited by 91 · see citing works
Synthetic scaffolds for 3D cell cultures and organoids: applications in regenerative medicine
Marchini, A., & Gelain, F. (2022) · Critical Reviews in Biotechnology · doi:10.1080/07388551.2021.1932716 · Cited by 91 · see citing works
Toward Regeneration of the Heart: Bioengineering Strategies for Immunomodulation
Ferrini, A., Stevens, M. M., Sattler, S., & Rosenthal, N. A. (2019) · Frontiers in Cardiovascular Medicine · doi:10.3389/fcvm.2019.00026 · Cited by 79 · see citing works
Applications of human organoids in the personalized treatment for digestive diseases
Wang, Q., Guo, F., Jin, Y., & Ma, Y. (2022) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-022-01194-6 · Cited by 82 · see citing works
Advances in development and application of human organoids
Shankaran, A., Prasad, K., Chaudhari, S., Brand, A. M., & Satyamoorthy, K. (2021) · 3 Biotech · doi:10.1007/s13205-021-02815-7 · Cited by 74 · see citing works
Long-term flow through human intestinal organoids with the gut organoid flow chip (GOFlowChip)
Sidar, B., Jenkins, B. R., Huang, S., Spence, J. R., Walk, S. T., & Wilking, J. N. (2019) · Lab on a Chip · doi:10.1039/c9lc00653b · Cited by 74 · see citing works
Self-citationIn vitro models of intestinal epithelium: Toward bioengineered systems
Creff, J., Malaquin, L., & Besson, A. (2021) · Journal of Tissue Engineering · doi:10.1177/2041731420985202 · Cited by 73 · see citing works
Microbiome as an immune regulator in health, disease, and therapeutics
Juarez, V. M., Montalbine, A. N., & Singh, A. K. (2022) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2022.114400 · Cited by 76 · see citing works
Generation and analysis of 3D cell culture models for drug discovery
Belfiore, L., Aghaei‐Ghareh‐Bolagh, B., Law, A. M. K., Dobrowolski, J. C., Raftery, L. J., Tjandra, A. D., Yee, C., Piloni, A., Volkerling, A. M., Ferris, C. J., et al. (2021) · European Journal of Pharmaceutical Sciences · doi:10.1016/j.ejps.2021.105876 · Cited by 74 · see citing works
Engineering hydrogels for personalized disease modeling and regenerative medicine
Tayler, I. M., & Stowers, R. S. (2021) · Acta Biomaterialia · doi:10.1016/j.actbio.2021.04.020 · Cited by 70 · see citing works
Standardization and consensus in the development and application of bone organoids
Jian, W., Chen, X., Li, R., Wang, S., Geng, Z., Shi, Z., Jing, Y., Xu, K., Wei, Y., Wang, G., et al. (2024) · Theranostics · doi:10.7150/thno.105840 · Cited by 72 · see citing works
Manian, K. V., Galloway, C. A., Dalvi, S., Emanuel, A. A., Mereness, J. A., Black, W., Winschel, L., Soto, C. A., Li, Y., Song, Y., et al. (2021) · Cell stem cell · doi:10.1016/j.stem.2021.02.006 · Cited by 64 · see citing works
Star polymer networks: a toolbox for cross-linked polymers with controlled structure
Nakagawa, S., & Yoshie, N. (2022) · Polymer Chemistry · doi:10.1039/d1py01547h · Cited by 64 · see citing works
Advancing Tissue Decellularized Hydrogels for Engineering Human Organoids
Moura, B. S., Monteiro, M. V., Ferreira, L. P., Lavrador, P., Gaspar, V. M., & Mano, J. F. (2022) · Advanced Functional Materials · doi:10.1002/adfm.202202825 · Cited by 63 · see citing works
Xue, B., Tang, D., Wu, X., Xu, Z., Gu, J., Han, Y., Zhu, Z., Qin, M., Zou, X., Wang, W., et al. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2110961118 · Cited by 57 · see citing works
Jung, M., Skhinas, J. N., Du, E. Y., Tolentino, M. A. K., Utama, R. H., Engel, M., Volkerling, A. M., Sexton, A., O’Mahony, A. P., Ribeiro, J. C. C., et al. (2022) · Biomaterials Science · doi:10.1039/d2bm00651k · Cited by 56 · see citing works
Thai, V. L., Ramos‐Rodriguez, D. H., Mesfin, M., & Leach, J. K. (2023) · Materials Today Bio · doi:10.1016/j.mtbio.2023.100769 · Cited by 53 · see citing works
Xiao, Z., Zhao, S., Zhang, X., Wei, G., & Su, Z. (2022) · Macromolecular Materials and Engineering · doi:10.1002/mame.202200385 · Cited by 51 · see citing works
Understanding the cellular origin and progression of esophageal cancer using esophageal organoids
Sachdeva, U. M., Shimonosono, M., Flashner, S. P., Cruz‐Acuña, R., Gabre, J. T., & Nakagawa, H. (2021) · Cancer Letters · doi:10.1016/j.canlet.2021.03.031 · Cited by 47 · see citing works
Self-citationGilchrist, A. E., Serrano, J. F., Ngo, M. T., Hrnjak, Z., Kim, S., & Harley, B. A. C. (2021) · Acta Biomaterialia · doi:10.1016/j.actbio.2021.06.028 · Cited by 46 · see citing works
Treacy, N. J., Clerkin, S., Davis, J. L., Kennedy, C., Miller, A. F., Saiani, A., Wychowaniec, J. K., Brougham, D. F., & Crean, J. K. G. (2022) · Bioactive Materials · doi:10.1016/j.bioactmat.2022.08.003 · Cited by 46 · see citing works
Engineered biomimetic hydrogels for organoids
Li, Y., Saiding, Q., Wang, Z., & Cui, W. (2023) · Progress in Materials Science · doi:10.1016/j.pmatsci.2023.101216 · Cited by 45 · see citing works
Synthetic Matrices for Intestinal Organoid Culture: Implications for Better Performance
Poudel, H., Sanford, K., Szwedo, P. K., Pathak, R., & Ghosh, A. (2021) · ACS Omega · doi:10.1021/acsomega.1c05136 · Cited by 45 · see citing works
Recent advances in organoid engineering: A comprehensive review
Unagolla, J. M., & Jayasuriya, A. C. (2022) · Applied Materials Today · doi:10.1016/j.apmt.2022.101582 · Cited by 44 · see citing works
Biomedical Applications of Nanoparticles
Bharathala, S., & Sharma, P. (2019) · Elsevier eBooks · doi:10.1016/b978-0-12-818823-1.00008-9 · Cited by 43 · see citing works
Recent advances in chemically defined and tunable hydrogel platforms for organoid culture
Agarwal, T., Celikkin, N., Costantini, M., Maiti, T. K., & Makvandi, P. (2021) · Bio-Design and Manufacturing · doi:10.1007/s42242-021-00126-7 · Cited by 42 · see citing works
3D multicellular systems in disease modelling: From organoids to organ-on-chip
Goldrick, C., Guri, I., Herrera-Oropeza, G. E., O’Brien-Gore, C., Roy, E., Wojtynska, M., & Spagnoli, F. M. (2023) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2023.1083175 · Cited by 42 · see citing works
Takahashi, Y., Inoue, Y., Sato, S., Okabe, T., Kojima, H., Kiyono, H., Shimizu, M., Yamauchi, Y., & Sato, R. (2023) · Scientific Reports · doi:10.1038/s41598-023-32438-2 · Cited by 41 · see citing works
Synthetic, multi-dynamic hydrogels by uniting stress-stiffening and supramolecular polymers
Rijns, L., Rutten, M. G. T. A., Bellan, R., Yuan, H., Mugnai, M. L., Rocha, S., Gado, E. D., Kouwer, P. H. J., & Dankers, P. Y. W. (2024) · Science Advances · doi:10.1126/sciadv.adr3209 · Cited by 41 · see citing works
Bioactive peptides for boosting stem cell culture platform: Methods and applications
Dayem, A. A., Lee, S. B., Lim, K. M., Kim, A., Shin, H. J., Vellingiri, B., Kim, Y. B., & Cho, S. (2023) · Biomedicine & Pharmacotherapy · doi:10.1016/j.biopha.2023.114376 · Cited by 41 · see citing works
Engineered Synthetic Matrices for Human Intestinal Organoid Culture and Therapeutic Delivery
Mulero‐Russe, A., & Garcı́a, A. J. (2023) · Advanced Materials · doi:10.1002/adma.202307678 · Cited by 40 · see citing works
Self-citationHsia, G. S. P., Esposito, J., Rocha, L. A., Ramos, S. L. G., & Okamoto, O. K. (2021) · Stem Cells International · doi:10.1155/2021/6632160 · Cited by 38 · see citing works
Advances in Extracellular Matrix-Mimetic Hydrogels to Guide Stem Cell Fate
Stowers, R. S. (2021) · Cells Tissues Organs · doi:10.1159/000514851 · Cited by 37 · see citing works
Ma, P., Chen, Y., Lai, X., Zheng, J., Ye, E., Loh, X. J., Zhao, Y., Parikh, B. H., Su, X., You, M., et al. (2021) · Macromolecular Bioscience · doi:10.1002/mabi.202100191 · Cited by 39 · see citing works
Mechanobiomaterials: Harnessing mechanobiology principles for tissue repair and regeneration
Lin, X. Y., Yang, H. S., Xia, Y., Wu, K., Chu, F., Zhou, H., Gao, H., & Yang, L. (2024) · Mechanobiology in Medicine · doi:10.1016/j.mbm.2024.100079 · Cited by 40 · see citing works
Braham, M. V. J., van Binnendijk, R. S., Buisman, A., Mebius, R. E., de Wit, J., & van Els, C. A. C. M. (2022) · iScience · doi:10.1016/j.isci.2022.105741 · Cited by 34 · see citing works
Li, L., Wang, S., Chen, Y., Dong, S., Zhang, C., Liao, L., & Zhang, W. (2024) · Chemical Engineering Journal · doi:10.1016/j.cej.2024.155206 · Cited by 37 · see citing works
Cruz‐Acuña, R., Kariuki, S. W., Sugiura, K., Karaiskos, S., Plaster, E. M., Loebel, C., Efe, G., Karakasheva, T. A., Gabre, J. T., Hu, J., et al. (2023) · Journal of Clinical Investigation · doi:10.1172/jci168146 · Cited by 37 · see citing works
Self-citationXu, X., Li, Z., Ai, X., Tang, Y., Yang, D., & Dou, L. (2021) · International Endodontic Journal · doi:10.1111/iej.13641 · Cited by 35 · see citing works
Advances in biomimetic hydrogels for organoid culture
Luo, L., Liu, L., Ding, Y., Dong, Y., & Ma, M. (2023) · Chemical Communications · doi:10.1039/d3cc01274c · Cited by 35 · see citing works
Extracellular-Matrix-Mimetic Hydrogels by Using Nanomaterials
Kim, D., & Cha, G. D. (2025) · International Journal of Molecular Sciences · doi:10.3390/ijms26114987 · Cited by 32 · see citing works
Ort, C., Chen, Y., Ghagre, A., Ehrlicher, A. J., & Moraes, C. (2021) · ACS Biomaterials Science & Engineering · doi:10.1021/acsbiomaterials.1c00129 · Cited by 31 · see citing works
Xu, Z. Z., Huang, J., Liu, Y., Chen, C., Qu, G., Wang, G., Zhao, Y., Wu, X., & Ren, J. (2022) · Bioengineering & Translational Medicine · doi:10.1002/btm2.10327 · Cited by 31 · see citing works
Human induced pluripotent stem cell-derived planar neural organoids assembled on synthetic hydrogels
Majumder, J., Torr, E., Aisenbrey, E. A., Lebakken, C. S., Favreau, P. F., Richards, W. D., Yin, Y., Chang, Q., & Murphy, W. L. (2024) · Journal of Tissue Engineering · doi:10.1177/20417314241230633 · Cited by 30 · see citing works
Self-organization of organoids from endoderm-derived cells
Lewis, A. C., Keshara, R., Kim, Y. H., & Grapin‐Botton, A. (2020) · Journal of Molecular Medicine · doi:10.1007/s00109-020-02010-w · Cited by 30 · see citing works
Emerging role and promise of nanomaterials in organoid research
Mahapatra, C., Lee, A., & Paul, M. K. (2021) · Drug Discovery Today · doi:10.1016/j.drudis.2021.11.007 · Cited by 31 · see citing works
Jia, J., Jeon, E. J., Mei, L., Richards, D., Lee, S., Jung, Y., Barrs, R. W., Coyle, R. C., Li, X., Chou, C. J., et al. (2020) · Science Advances · doi:10.1126/sciadv.aaz5894 · Cited by 28 · see citing works
Challenges to, and prospects for, reverse engineering the gastrointestinal tract using organoids
Kakni, P., Truckenmüller, R. K., Habibović, P., & Giselbrecht, S. (2022) · Trends in biotechnology · doi:10.1016/j.tibtech.2022.01.006 · Cited by 28 · see citing works
Diverse reactivity of maleimides in polymer science and beyond
Kirkpatrick, B. E., Anseth, K. S., & Hebner, T. S. (2024) · Polymer International · doi:10.1002/pi.6715 · Cited by 27 · see citing works
Chen, F., Wang, Z., Yao, H., Liu, Q.-G., Gan, Y., Xu, S., Bao, H.-L., Jin, Y., Hu, Y.-P., Gao, J., et al. (2025) · Trends in Biotechnology · doi:10.1016/j.tibtech.2025.04.009 · Cited by 27 · see citing works
Emerging technologies provide insights on cancer extracellular matrix biology and therapeutics
Cruz‐Acuña, R., Vunjak‐Novakovic, G., Burdick, J. A., & Rustgi, A. K. (2021) · iScience · doi:10.1016/j.isci.2021.102475 · Cited by 26 · see citing works
Self-citationCustomized 3D-printed stackable cell culture inserts tailored with bioactive membranes
Doğan, A. A., & Dufva, M. (2022) · Scientific Reports · doi:10.1038/s41598-022-07739-7 · Cited by 25 · see citing works
Qian, S., Mao, J., Liu, Z., Zhao, B., Zhao, Q., Lu, B., Zhang, L., Mao, X., Cheng, L., Cui, W., et al. (2022) · Smart Medicine · doi:10.1002/smmd.20220007 · Cited by 25 · see citing works
A review on current brain organoid technologies from a biomedical engineering perspective
Lokai, T., Albin, B., Qubbaj, K., Tiwari, A. P., Adhikari, P., & Yang, I. H. (2023) · Experimental Neurology · doi:10.1016/j.expneurol.2023.114461 · Cited by 25 · see citing works
Engineered Three-Dimensional Tumor Models to Study Natural Killer Cell Suppression
Temples, M. N., Adjei, I. M., Nimocks, P. M., Djeu, J. Y., & Sharma, B. (2020) · ACS Biomaterials Science & Engineering · doi:10.1021/acsbiomaterials.0c00259 · Cited by 24 · see citing works
Engineered materials to model human intestinal development and cancer using organoids
Cruz‐Acuña, R., & Garcı́a, A. J. (2019) · Experimental Cell Research · doi:10.1016/j.yexcr.2019.02.017 · Cited by 23 · see citing works
Self-citationO’Melia, M. J., Mulero‐Russe, A., Kim, J., Pybus, A. F., DeRyckere, D., Wood, L. B., Graham, D. K., Botchwey, E. A., Garcı́a, A. J., & Thomas, S. N. (2022) · Advanced Materials · doi:10.1002/adma.202108084 · Cited by 23 · see citing works
Self-citationHuman Organoids and Their Application in Tumor Models, Disease Modeling, and Tissue Engineering
Song, S., Liu, Z., Wang, Y., & Gong, B. (2025) · Medicine Bulletin · doi:10.1002/mdb2.70001 · Cited by 24 · see citing works
Cruz‐Acuña, R., Mulero‐Russe, A., Clark, A. Y., Zent, R., & Garcı́a, A. J. (2019) · Journal of Cell Science · doi:10.1242/jcs.226639 · Cited by 22 · see citing works
Self-citationFowler, E. W., Ravikrishnan, A., Witt, R. L., Pradhan-Bhatt, S., & Jia, X. (2021) · ACS Biomaterials Science & Engineering · doi:10.1021/acsbiomaterials.1c00745 · Cited by 22 · see citing works
Transient Competitors to Modulate Dynamic Covalent Cross-Linking of Recombinant Hydrogels
Gilchrist, A. E., Liu, Y., Klett, K. C., Liu, Y., Ceva, S., & Heilshorn, S. C. (2023) · Chemistry of Materials · doi:10.1021/acs.chemmater.3c01575 · Cited by 21 · see citing works
Ai, Y., Hu, C., Wang, Y., Liu, Y., Liu, R., Xu, H., Li, H., Zhao, Y., Wang, Y., Ning, R., et al. (2025) · Chemical Engineering Journal · doi:10.1016/j.cej.2025.160861 · Cited by 20 · see citing works
Biomaterials and biosensors in intestinal organoid culture, a progress review
Huang, J., Jiang, Y., Ren, Y., Liu, Y., Wu, X., Li, Z., & Ren, J. (2020) · Journal of Biomedical Materials Research Part A · doi:10.1002/jbm.a.36921 · Cited by 20 · see citing works
Advances in organoid-on-a-chip for recapitulation of human physiological events
Park, B. J., Park, J., Han, S., Kwon, T., Sung, J. Y., Kim, J., Safarkhani, M., Min, K.-H., Lee, E.-H., Kang, S., et al. (2025) · Materials Today · doi:10.1016/j.mattod.2025.02.002 · Cited by 20 · see citing works
Rational design matrix materials for organoid development and application in biomedicine
Huang, Y. F., Zhang, X., Zhang, W., Tang, J., & Liu, J. (2025) · Regenerative Biomaterials · doi:10.1093/rb/rbaf038 · Cited by 20 · see citing works
Biomaterials and bioengineering to guide tissue morphogenesis in epithelial organoids
Jeon, E. Y., Sorrells, L., & Abaci, H. E. (2022) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2022.1038277 · Cited by 19 · see citing works
Designed Multifunctional Spider Silk Enabled by Genetically Encoded Click Chemistry
Jiang, B., Tan, S. Y., Fang, S., Feng, X., Park, B. M., Fok, H. K. F., Yang, Z., Wang, R., Kou, S., Wu, A. R., et al. (2023) · Advanced Functional Materials · doi:10.1002/adfm.202304143 · Cited by 18 · see citing works
Advances in engineered organoid models of skin for biomedical research
Zeng, D., Li, S., Du, F., Xia, Y., Zhang, J., Yu, S., & Qin, J. (2025) · Burns & Trauma · doi:10.1093/burnst/tkaf016 · Cited by 20 · see citing works
Next-Generation Biomaterials for Culture and Manipulation of Stem CellsPreprint
Uto, K., Arakawa, C. K., & DeForest, C. A. (2019) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a035691 · Cited by 16 · see citing works
de Lau, W. B. M., Wijnakker, J. J. A. P. M., van Son, G. J. F., Krueger, D., Wang, D., Abendroth, M. S., Schreurs, R., Janda, C. Y., van Rijt, F. L. H., Chalopin, B., et al. (2025) · Nature Biotechnology · doi:10.1038/s41587-025-02874-8 · Cited by 22 · see citing works
Advances in Tumor Organoids for the Evaluation of Drugs: A Bibliographic Review
Londoño-Berrío, M., Castro, C. I., Cañas, A. I., Ortiz, I., & Osorio, M. (2022) · Pharmaceutics · doi:10.3390/pharmaceutics14122709 · Cited by 16 · see citing works
Human Lung Organoid Culture in Alginate With and Without Matrigel to Model Development and Disease
Dye, B. R., Decker, J. T., Hein, R. F. C., Miller, A. J., Huang, S., Spence, J. R., & Shea, L. D. (2022) · Tissue Engineering Part A · doi:10.1089/ten.tea.2022.0054 · Cited by 17 · see citing works
Self-citationJia, Z., & Wang, Z. (2025) · International Journal of Molecular Sciences · doi:10.3390/ijms26020663 · Cited by 15 · see citing works
Matrigel Tunes H9 Stem Cell-Derived Human Cerebral Organoid Development
Estridge, R. C., O’Neill, J. E., & Keung, A. J. (2023) · Organoids · doi:10.3390/organoids2040013 · Cited by 17 · see citing works
Bioengineering toolkits for potentiating organoid therapeutics
Park, S., & Cho, S. (2024) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2024.115238 · Cited by 15 · see citing works
Remodelling and Improvements in Organoid Technology to Study Liver Carcinogenesis in a Dish
Tharehalli, U., Svinarenko, M., & Lechel, A. (2019) · Stem Cells International · doi:10.1155/2019/3831213 · Cited by 15 · see citing works
Facile photopatterning of perfusable microchannels in hydrogels for microphysiological systems
Mora‐Boza, A., Mulero‐Russe, A., Caprio, N. D., Burdick, J. A., O’Neill, E., Singh, A. K., & Garcı́a, A. J. (2024) · Nature Protocols · doi:10.1038/s41596-024-01041-8 · Cited by 13 · see citing works
Self-citation
- Authors
- Cruz-Acuña, R., Quirós, M., Huang, S., Siuda, D., Spence, J. R., Nusrat, A., & García, A. J.
- Affiliations
- University of Michigan (US)
- Corresponding author
- Spence, Jason R.
- Nusrat, Asma
- Venue
- Nature Protocols
- Published
- 2018-09
- Volume
- 13
- Issue
- 9
- Pages
- 2102-2119
- ISSN
- 1750-2799 (ISSN-L)
- 1754-2189
- PMC
- PMC7240347
- OpenAlex
- W2892378739
- Cited by
- 168
- References
- 30
- Citations by year
- 2026: 16 · 2025: 26 · 2024: 16 · 2023: 24 · 2022: 26 · 2021: 30 · 2020: 16 · 2019: 14
- FWCI
- 5.67
- Type
- journal article
- Language
- en
- Update notices
- correction (2018-10-24)
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Protocols (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health (UL1TR000454)
- National Heart, Lung, and Blood Institute (R01HL119215)
- National Institute of Allergy and Infectious Diseases (U19AI116482)
- National Institute of Diabetes and Digestive and Kidney Diseases (U24DK085532, P30DK034933, R01DK055679, R56DK089763, R29DK055679, R01DK059888, U01DK085532, U01DK103141, R01DK089763)
- National Institute of Arthritis and Musculoskeletal and Skin Diseases (R01AR062368, R01AR062920)
- National Center for Advancing Translational Sciences
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Medicine › Hydrogels: synthesis, properties, applications
- Health Sciences › Medicine › Surgery › Tissue Engineering and Regenerative Medicine
- Physical Sciences › Engineering › Biomedical Engineering › 3D Printing in Biomedical Research
- Keywords
- human organoids, pluripotent stem cell differentiation, synthetic hydrogels, hydrogel encapsulation, in vivo delivery, tissue regeneration
- MeSH terms
- Animals, Colon, Humans, Organoids, Organ Transplantation, Hydrogels, Models, Animal, Pluripotent Stem Cells, Tissue Culture Techniques, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review