Synthetic hydrogels for human intestinal organoid generation and colonic wound repair
Open accessAbstract
In vitro differentiation of human intestinal organoids (HIOs) from pluripotent stem cells is an unparalleled system for creating complex, multicellular three-dimensional structures capable of giving rise to tissue analogous to native human tissue. Current methods for generating HIOs rely on growth in an undefined tumour-derived extracellular matrix (ECM), which severely limits the use of organoid technologies for regenerative and translational medicine. Here, we developed a fully defined, synthetic hydrogel based on a four-armed, maleimide-terminated poly(ethylene glycol) macromer that supports robust and highly reproducible in vitro growth and expansion of HIOs, such that three-dimensional structures are never embedded in tumour-derived ECM. We also demonstrate that the hydrogel serves as an injection vehicle that can be delivered into injured intestinal mucosa resulting in HIO engraftment and improved colonic wound repair. Together, these studies show proof-of-concept that HIOs may be used therapeutically to treat intestinal injury.
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Matrigel is mainly composed of laminin, collagen IV, entactin, perlecan, and growth factors, and its composition resembles the basement membrane.
“Matrigel is mainly comprised of laminin, collagen IV, entactin, perlecan and growth factors, and is similar in composition to the basement membrane62.”
From Organoids (2022) · cites this paper as [62]
The passage labeled Abstract (page unavailable) describes Matrigel as a mixture of ECM proteins, proteoglycans, and growth factors. It does not identify laminin, collagen IV, entactin, or perlecan as its main components, or say that its composition resembles the basement membrane. (LLM, conf=0.86)
Experimental — accuracy not yet measuredOther matrices with defined compositions, such as recombinant human collagen, fibrin, or synthetic hydrogels, have been explored as alternatives to Matrigel.
“Therefore, other matrices with defined compositions64 have been explored as alternative matrices to Matrigel, such as recombinant human collagen62, fibrin65, or synthetic hydrogels3,63.”
From Organoids (2022) · cites this paper as [62]
Spheroids are being used to emulate organs such as the intestine, liver, kidney, brain, and heart to study human development and disease in vitro.
“These spheroids are being used to emulate organs such as the intestine2, liver3, kidney4, brain5, and heart6 to study human development and disease in vitro.”
From 3D bioprinting of high cell-density heterogeneous tissue models through spheroid fusion within self-healing hydrogels (2021) · cites this paper as [2]
Organoid viability was reduced at high PEG density and matrix stiffness.
“Organoid viability was reduced at high PEG density and matrix stiffness;”
From Towards organoid culture without Matrigel (2021) · cites this paper as [163]
When PEG was crosslinked with dithiothreitol to inhibit matrix degradation, organoid viability at seven days was poor as measured by live-dead staining.
“Intriguingly, when PEG was crosslinked with dithiothreitol to inhibit matrix degradation, organoid viability at seven days was poor as measured by live-dead staining.”
From Towards organoid culture without Matrigel (2021) · cites this paper as [163]
PEG-based materials may need to be soft and degradable in order to support differentiated intestinal organoids.
“Cruz-Acuna and colleagues also found that PEG-based materials may need to be soft and degradable in order to support differentiated intestinal organoids.”
From Towards organoid culture without Matrigel (2021) · cites this paper as [163]
RGD- or AG73-functionalized PEG matrices promoted greater organoid viability than laminin-derived IKVAV- or type I collagen-derived GFOGER peptides.
“RGD- or AG73 (CGGRKRLQVQLSIRT)-functionalized PEG matrices promoted greater organoid viability than laminin-derived IKVAV- or type I collagen-derived GFOGER peptides163,164.”
From Towards organoid culture without Matrigel (2021) · cites this paper as [163]
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Cites
Induction of Pluripotent Stem Cells from Adult Human Fibroblasts by Defined Factors
Takahashi, K., Tanabe, K., Ohnuki, M., Narita, M., Ichisaka, T., Tomoda, K., & Yamanaka, S. (2007) · Cell · doi:10.1016/j.cell.2007.11.019 · Cited by 20,221 · see citing works
Embryonic Stem Cell Lines Derived from Human Blastocysts
Thomson, J. A., Itskovitz‐Eldor, J., Shapiro, S. S., Waknitz, M. A., Swiergiel, J. J., Marshall, V. S., & Jones, J. M. (1998) · Science · doi:10.1126/science.282.5391.1145 · Cited by 15,947 · see citing works
Identification of stem cells in small intestine and colon by marker gene Lgr5
Barker, N., van Es, J. H., Kuipers, J., Kujala, P., van den Born, M., Cozijnsen, M., Haegebarth, A., Korving, J., Begthel, H., Peters, P. J., et al. (2007) · Nature · doi:10.1038/nature06196 · Cited by 5,687 · see citing works
Modeling Development and Disease with Organoids
Clevers, H. (2016) · Cell · doi:10.1016/j.cell.2016.05.082 · Cited by 3,196 · see citing works
Calcium sensitization of smooth muscle mediated by a Rho-associated protein kinase in hypertension
Uehata, M., Ishizaki, T., Satoh, H., Ono, T., Kawahara, T., Morishita, T., Tamakawa, H., Yamagami, K., Inui, J., Maekawa, M., et al. (1997) · Nature · doi:10.1038/40187 · Cited by 2,862 · see citing works
Directed differentiation of human pluripotent stem cells into intestinal tissue in vitro
Spence, J. R., Mayhew, C. N., Rankin, S. A., Kuhar, M. F., Vallance, J. E., Tolle, K. A., Hoskins, E. E., Kalinichenko, V. V., Wells, S. I., Zorn, A. M., et al. (2010) · Nature · doi:10.1038/nature09691 · Cited by 1,911 · see citing works
Self-citationLong-Term Culture of Genome-Stable Bipotent Stem Cells from Adult Human Liver
Huch, M., Gehart, H., van Boxtel, R., Hamer, K., Blokzijl, F., Verstegen, M. M. A., Ellis, E., van Wenum, M., Fuchs, S. A., de Ligt, J., et al. (2015) · Cell · doi:10.1016/j.cell.2014.11.050 · Cited by 1,619 · see citing works
Matrigel: A complex protein mixture required for optimal growth of cell culture
Hughes, C. S., Postovit, L. M., & Lajoie, G. A. (2010) · PROTEOMICS · doi:10.1002/pmic.200900758 · Cited by 1,534 · see citing works
Organoids as an in vitro model of human development and disease
Fatehullah, A., Tan, S. H., & Barker, N. (2016) · Nature Cell Biology · doi:10.1038/ncb3312 · Cited by 1,508 · see citing works
Designer matrices for intestinal stem cell and organoid culture
Gjorevski, N., Sachs, N., Manfrin, A., Giger, S., Bragina, M. E., Ordóñez-Morán, P., Clevers, H., & Lutolf, M. P. (2016) · Nature · doi:10.1038/nature20168 · Cited by 1,426 · see citing works
Dissecting temporal and spatial control of cytokinesis with a myosin II Inhibitor
Straight, A. F., Cheung, A., Limouze, J., Chen, I., Westwood, N. J., Sellers, J. R., & Mitchison, T. J. (2003) · Science · doi:10.1126/science.1081412 · Cited by 1,412 · see citing works
The promise of induced pluripotent stem cells in research and therapy
Robinton, D., & Daley, G. (2012) · Nature · doi:10.1038/nature10761 · Cited by 1,152 · see citing works
A functional CFTR assay using primary cystic fibrosis intestinal organoids
Dekkers, J. F., Wiegerinck, C. L., de Jonge, H. R., Bronsveld, I., Janssens, H. M., de Winter-de Groot, K. M., Brandsma, A. M., de Jong, N. W. M., Bijvelds, M. J. C., Scholte, B. J., et al. (2013) · Nature Medicine · doi:10.1038/nm.3201 · Cited by 999 · see citing works
In vitro generation of human pluripotent stem cell derived lung organoids
Dye, B. R., Hill, D. R., Ferguson, M. A. H., Tsai, Y.-H., Nagy, M. S., Dyal, R., Wells, J. M., Mayhew, C. N., Nattiv, R., Klein, O. D., et al. (2015) · eLife · doi:10.7554/elife.05098 · Cited by 824 · see citing works
Self-citationFunctional engraftment of colon epithelium expanded in vitro from a single adult Lgr5+ stem cell
Yui, S., Nakamura, T., Sato, T., Nemoto, Y., Mizutani, T., Zheng, X., Ichinose, S., Nagaishi, T., Okamoto, R., Tsuchiya, K., et al. (2012) · Nature Medicine · doi:10.1038/nm.2695 · Cited by 805 · see citing works
van der Flier, L. G., Haegebarth, A., Stange, D. E., van de Wetering, M., & Clevers, H. C. (2009) · Gastroenterology · doi:10.1053/j.gastro.2009.05.035 · Cited by 550 · see citing works
Dekkers, J. F., Berkers, G., Kruisselbrink, E., Vonk, A., de Jonge, H. R., Janssens, H. M., Bronsveld, I., van de Graaf, E. A., Nieuwenhuis, E. E. S., Houwen, R. H. J., et al. (2016) · Science Translational Medicine · doi:10.1126/scitranslmed.aad8278 · Cited by 548 · see citing works
Phelps, E. A., Enemchukwu, N. O., Fiore, V. F., Sy, J. C., Murthy, N., Sulchek, T., Barker, T. H., & Garcı́a, A. J. (2011) · Advanced Materials · doi:10.1002/adma.201103574 · Cited by 541 · see citing works
Self-citationGenerating human intestinal tissue from pluripotent stem cells in vitro
McCracken, K. W., Howell, J. C., Wells, J. M., & Spence, J. R. (2011) · Nature Protocols · doi:10.1038/nprot.2011.410 · Cited by 433 · see citing works
Self-citationLeoni, G., Neumann, P., Kamaly, N., Quirós, M., Nishio, H., Jones, H. R., Sumagin, R., Hilgarth, R., Alam, A. M., Fredman, G., et al. (2015) · Journal of Clinical Investigation · doi:10.1172/jci76693 · Cited by 355 · see citing works
Self-citationLeslie, J. L., Huang, S., Opp, J. S., Nagy, M. S., Kobayashi, M., Young, V. B., & Spence, J. R. (2014) · Infection and Immunity · doi:10.1128/iai.02561-14 · Cited by 323 · see citing works
Self-citationUse of differentiated pluripotent stem cells in replacement therapy for treating disease
Fox, I. J., Daley, G. Q., Goldman, S. A., Huard, J., Kamp, T. J., & Trucco, M. (2014) · Science · doi:10.1126/science.1247391 · Cited by 291 · see citing works
Defined three-dimensional microenvironments boost induction of pluripotency
Caiazzo, M., Okawa, Y., Ranga, A., Piersigilli, A., Tabata, Y., & Lutolf, M. P. (2016) · Nature Materials · doi:10.1038/nmat4536 · Cited by 271 · see citing works
Finkbeiner, S. R., Hill, D. R., Altheim, C. H., Dedhia, P. H., Taylor, M. J., Tsai, Y.-H., Chin, A. M., Mahé, M. M., Watson, C. L., Freeman, J. J., et al. (2015) · Stem Cell Reports · doi:10.1016/j.stemcr.2015.04.010 · Cited by 250 · see citing works
Self-citationKita‐Matsuo, H., Barcová, M., Prigozhina, N. L., Salomonis, N., Wei, K. A., Jacot, J. G., Nelson, B., Spiering, S., Haverslag, R. T., Kim, C., et al. (2009) · PLoS ONE · doi:10.1371/journal.pone.0005046 · Cited by 227 · see citing works
Dye, B. R., Dedhia, P. H., Miller, A. J., Nagy, M. S., White, E. S., Shea, L. D., & Spence, J. R. (2016) · eLife · doi:10.7554/elife.19732 · Cited by 191 · see citing works
Self-citationHoffman, M. P., Nomizu, M., Roque, E., Lee, S. C. L., Jung, D. W., Yamada, Y., & Kleinman, H. K. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.44.28633 · Cited by 187 · see citing works
Wells, J. M., & Spence, J. R. (2014) · Development · doi:10.1242/dev.097386 · Cited by 174 · see citing works
Self-citationFinkbeiner, S. R., Freeman, J. J., Wieck, M. M., El-Nachef, W., Altheim, C. H., Tsai, Y.-H., Huang, S., Dyal, R., White, E. S., Grikscheit, T. C., et al. (2015) · Biology Open · doi:10.1242/bio.013235 · Cited by 174 · see citing works
Self-citationPhelps, E. A., Headen, D. M., Taylor, W. R., Thulé, P. M., & Garcı́a, A. J. (2013) · Biomaterials · doi:10.1016/j.biomaterials.2013.03.012 · Cited by 170 · see citing works
Self-citationGerbe, F., Brulin, B., Makrini, L., Legraverend, C., & Jay, P. (2009) · Gastroenterology · doi:10.1053/j.gastro.2009.06.072 · Cited by 165 · see citing works
Structure of the Integrin α2β1-binding Collagen Peptide
Emsley, J., Knight, C. G., Farndale, R. W., & Barnes, M. J. (2003) · Journal of Molecular Biology · doi:10.1016/j.jmb.2003.11.030 · Cited by 135 · see citing works
Laminin-111-derived peptides and cancer
Kikkawa, Y., Hozumi, K., Katagiri, F., Nomizu, M., Kleinman, H. K., & Koblinski, J. E. (2013) · Cell Adhesion & Migration · doi:10.4161/cam.22827 · Cited by 132 · see citing works
Besson, D., Pavageau, A.-H., Valo, I., Bourreau, A., Bélanger, A., Eymerit-Morin, C., Moulière, A., Chassevent, A., Boisdron-Celle, M., Morel, A., et al. (2011) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m111.009712 · Cited by 128 · see citing works
Enemchukwu, N. O., Cruz‐Acuña, R., Bongiorno, T., Johnson, C. T., García, J. R., Sulchek, T., & Garcı́a, A. J. (2015) · The Journal of Cell Biology · doi:10.1083/jcb.201506055 · Cited by 125 · see citing works
Self-citationA developmental framework for induced pluripotency
Takahashi, K., & Yamanaka, S. (2015) · Development · doi:10.1242/dev.114249 · Cited by 111 · see citing works
Genetic Analyses of Integrin SignalingPreprint
Wickstrom, S. A., Radovanac, K., & Fassler, R. (2010) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a005116 · Cited by 95 · see citing works
Distribution of intestinal stem cell markers in colorectal precancerous lesions
Jang, B. G., Kim, H. S., Kim, K. J., Rhee, Y.-Y., Kim, W. H., & Kang, G. H. (2015) · Histopathology · doi:10.1111/his.12787 · Cited by 38 · see citing works
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Effects of extracellular matrix viscoelasticity on cellular behaviour
Chaudhuri, O., Cooper-White, J., Janmey, P. A., Mooney, D. J., & Shenoy, V. B. (2020) · Nature · doi:10.1038/s41586-020-2612-2 · Cited by 2,224 · see citing works
Progress and potential in organoid research
Rossi, G., Manfrin, A., & Lutolf, M. P. (2018) · Nature Reviews Genetics · doi:10.1038/s41576-018-0051-9 · Cited by 1,182 · see citing works
Hofer, M., & Lutolf, M. P. (2021) · Nature Reviews Materials · doi:10.1038/s41578-021-00279-y · Cited by 1,184 · see citing works
Synthetic alternatives to Matrigel
Aisenbrey, E. A., & Murphy, W. L. (2020) · Nature Reviews Materials · doi:10.1038/s41578-020-0199-8 · Cited by 1,016 · see citing works
Tales from the crypt: new insights into intestinal stem cells
Gehart, H., & Clevers, H. C. (2018) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-018-0081-y · Cited by 984 · see citing works
Zhao, Z., Chen, X., Dowbaj, A. M., Sljukic, A., Bratlie, K., Lin, L., Fong, E. L. S., Balachander, G. M., Chen, Z., Soragni, A., et al. (2022) · Nature Reviews Methods Primers · doi:10.1038/s43586-022-00174-y · Cited by 1,001 · see citing works
Extracellular matrix-based materials for regenerative medicine
Hussey, G. S., Dziki, J. L., & Badylak, S. F. (2018) · Nature Reviews Materials · doi:10.1038/s41578-018-0023-x · Cited by 844 · see citing works
Cell–extracellular matrix mechanotransduction in 3D
Saraswathibhatla, A., Indana, D., & Chaudhuri, O. (2023) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-023-00583-1 · Cited by 859 · see citing works
Brain organoids: advances, applications and challenges
Qian, X., Song, H., & Ming, G.-L. (2019) · Development · doi:10.1242/dev.166074 · Cited by 724 · see citing works
Giobbe, G. G., Crowley, C., Luni, C., Campinoti, S., Khedr, M., Kretzschmar, K., De Santis, M. M., Zambaiti, E., Michielin, F., Meran, L., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-13605-4 · Cited by 500 · see citing works
Daly, A. C., Davidson, M. D., & Burdick, J. A. (2021) · Nature Communications · doi:10.1038/s41467-021-21029-2 · Cited by 470 · see citing works
Next-generation cancer organoids
LeSavage, B. L., Suhar, R. A., Broguière, N., Lütolf, M. P., & Heilshorn, S. C. (2021) · Nature Materials · doi:10.1038/s41563-021-01057-5 · Cited by 462 · see citing works
Loebel, C., Mauck, R. L., & Burdick, J. A. (2019) · Nature Materials · doi:10.1038/s41563-019-0307-6 · Cited by 402 · see citing works
Bioengineering strategies to accelerate stem cell therapeutics
Madl, C. M., Heilshorn, S. C., & Blau, H. M. (2018) · Nature · doi:10.1038/s41586-018-0089-z · Cited by 431 · see citing works
Generation of lung organoids from human pluripotent stem cells in vitro
Miller, A. J., Dye, B. R., Ferrer-Torres, D., Hill, D. R., Overeem, A. W., Shea, L. D., & Spence, J. R. (2019) · Nature Protocols · doi:10.1038/s41596-018-0104-8 · Cited by 418 · see citing works
Self-citationEngineered materials for organoid systems
Kratochvil, M. J., Seymour, A. J., Li, T. L., Pașca, S. P., Kuo, C. J., & Heilshorn, S. C. (2019) · Nature Reviews Materials · doi:10.1038/s41578-019-0129-9 · Cited by 413 · see citing works
Towards organoid culture without Matrigel
Kozlowski, M. T., Crook, C. J., & Ku, H. T. (2021) · Communications Biology · doi:10.1038/s42003-021-02910-8 · Cited by 409 · see citing works
Chemical strategies to engineer hydrogels for cell culture
Lou, J., & Mooney, D. J. (2022) · Nature Reviews Chemistry · doi:10.1038/s41570-022-00420-7 · Cited by 400 · see citing works
Engineering Stem Cell Self-organization to Build Better Organoids
Brassard, J. A., & Lütolf, M. P. (2019) · Cell stem cell · doi:10.1016/j.stem.2019.05.005 · Cited by 379 · see citing works
Kim, S., Min, S., Choi, Y. S., Jo, S.-H., Jung, J. H., Han, K., Kim, J., An, S., Ji, Y. W., Kim, Y.-G., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-29279-4 · Cited by 375 · see citing works
Advances in Hydrogels in Organoids and Organs‐on‐a‐Chip
Liu, H., Wang, Y., Cui, K., Guo, Y., Zhang, X., & Qin, J. (2019) · Advanced Materials · doi:10.1002/adma.201902042 · Cited by 353 · see citing works
Daly, A. C., Prendergast, M. E., Hughes, A. J., & Burdick, J. A. (2021) · Cell · doi:10.1016/j.cell.2020.12.002 · Cited by 345 · see citing works
Rethinking organoid technology through bioengineering
Garreta, E., Kamm, R. D., Lopes, S. M. C. D. S., Lancaster, M. A., Weiss, R., Trepat, X., Hyun, I., & Montserrat, N. (2020) · Nature Materials · doi:10.1038/s41563-020-00804-4 · Cited by 326 · see citing works
Gao, Y., Peng, K., & Mitragotri, S. (2021) · Advanced Materials · doi:10.1002/adma.202006362 · Cited by 304 · see citing works
Matrix viscoelasticity controls spatiotemporal tissue organization
Elósegui-Artola, A., Gupta, A., Najibi, A. J., Seo, B. R., Garry, R., Tringides, C. M., de Lázaro, I., Darnell, M., Gu, W., Zhou, Q., et al. (2022) · Nature Materials · doi:10.1038/s41563-022-01400-4 · Cited by 293 · see citing works
Engineering Organoid Vascularization
Grebenyuk, S., & Ranga, A. (2019) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2019.00039 · Cited by 295 · see citing works
Growth of Epithelial Organoids in a Defined Hydrogel
Broguiere, N., Isenmann, L., Hirt, C., Ringel, T., Placzek, S., Cavalli, E., Ringnalda, F., Villiger, L., Züllig, R., Lehmann, R., et al. (2018) · Advanced Materials · doi:10.1002/adma.201801621 · Cited by 282 · see citing works
Biomaterials and engineered microenvironments to control YAP/TAZ-dependent cell behaviour
Brusatin, G., Panciera, T., Gandin, A., Citron, A., & Piccolo, S. (2018) · Nature Materials · doi:10.1038/s41563-018-0180-8 · Cited by 271 · see citing works
Synthetic dynamic hydrogels promote degradation-independent in vitro organogenesis
Chrisnandy, A., Blondel, D., Rezakhani, S., Broguiere, N., & Lutolf, M. P. (2022) · Nature Materials · doi:10.1038/s41563-021-01136-7 · Cited by 237 · see citing works
3D Bioprinting of Cell‐Laden Hydrogels for Improved Biological Functionality
Hull, S. M., Brunel, L. G., & Heilshorn, S. C. (2021) · Advanced Materials · doi:10.1002/adma.202103691 · Cited by 244 · see citing works
Engineering Multi‐Cellular Spheroids for Tissue Engineering and Regenerative Medicine
Kim, S., Kim, E. M., Yamamoto, M., Park, H., & Shin, H. (2020) · Advanced Healthcare Materials · doi:10.1002/adhm.202000608 · Cited by 233 · see citing works
Engineered hydrogels for mechanobiology
Blache, U., Ford, E. M., Ha, B. H., Rijns, L., Chaudhuri, O., Dankers, P. Y. W., Kloxin, A. M., Snedeker, J. G., & Gentleman, E. (2022) · Nature Reviews Methods Primers · doi:10.1038/s43586-022-00179-7 · Cited by 236 · see citing works
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Capeling, M. M., Czerwinski, M., Huang, S., Tsai, Y.-H., Wu, A., Nagy, M. S., Juliar, B., Sundaram, N., Song, Y., Han, W. M., et al. (2019) · Stem Cell Reports · doi:10.1016/j.stemcr.2018.12.001 · Cited by 226 · see citing works
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Sorrentino, G., Rezakhani, S., Yildiz, E., Nuciforo, S., Heim, M. H., Lutolf, M. P., & Schoonjans, K. (2020) · Nature Communications · doi:10.1038/s41467-020-17161-0 · Cited by 224 · see citing works
Feng, Q., Xu, J., Zhang, K., Yao, H., Zheng, N., Zheng, L., Wang, J., Wei, K., Xiao, X., Qin, L., et al. (2019) · ACS Central Science · doi:10.1021/acscentsci.8b00764 · Cited by 224 · see citing works
Bioresponsive drug delivery systems for the treatment of inflammatory diseases
Dou, Y., Li, C., Li, L., Guo, J., & Zhang, J. (2020) · Journal of Controlled Release · doi:10.1016/j.jconrel.2020.09.008 · Cited by 225 · see citing works
Bioengineering Approaches for the Advanced Organoid Research
Yi, S. A., Zhang, Y., Rathnam, C., Pongkulapa, T., & Lee, K. (2021) · Advanced Materials · doi:10.1002/adma.202007949 · Cited by 218 · see citing works
Kim, W., Gwon, Y., Park, S., Kim, H., & Kim, J. (2022) · Bioactive Materials · doi:10.1016/j.bioactmat.2022.03.039 · Cited by 211 · see citing works
AI-enabled organoids: Construction, analysis, and application
Bai, L., Wu, Y., Li, G., Zhang, W., Zhang, H., & Su, J. (2023) · Bioactive Materials · doi:10.1016/j.bioactmat.2023.09.005 · Cited by 216 · see citing works
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Liu, H., Wang, Y., Wang, H., Zhao, M., Tao, T., Zhang, X., & Qin, J. (2020) · Advanced Science · doi:10.1002/advs.201903739 · Cited by 191 · see citing works
Establishment and differentiation of long-term trophoblast organoid cultures from the human placenta
Sheridan, M. A., Fernando, R. C., Gardner, L., Hollinshead, M. S., Burton, G. J., Moffett, A., & Turco, M. Y. (2020) · Nature Protocols · doi:10.1038/s41596-020-0381-x · Cited by 186 · see citing works
Johnson, C. T., Wroe, J. A., Agarwal, R., Martin, K. E., Guldberg, R. E., Donlan, R. M., Westblade, L. F., & Garcı́a, A. J. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1801013115 · Cited by 186 · see citing works
Self-citationMapping Development of the Human Intestinal Niche at Single-Cell Resolution
Holloway, E. M., Czerwinski, M. J., Tsai, Y.-H., Wu, J. H., Wu, A., Childs, C. J., Walton, K. D., Sweet, C. W., Yu, Q., Glass, I. A., et al. (2020) · Cell stem cell · doi:10.1016/j.stem.2020.11.008 · Cited by 171 · see citing works
Self-citationMechanics of 3D Cell–Hydrogel Interactions: Experiments, Models, and Mechanisms
Vernerey, F. J., Sridhar, S. L., Muralidharan, A., & Bryant, S. J. (2021) · Chemical Reviews · doi:10.1021/acs.chemrev.1c00046 · Cited by 183 · see citing works
Hernandez‐Gordillo, V., Kassis, T., Lampejo, A. O., Choi, G., Gamboa, M. E., Gnecco, J. S., Brown, A., Breault, D. T., Carrier, R. L., & Griffith, L. G. (2019) · Biomaterials · doi:10.1016/j.biomaterials.2020.120125 · Cited by 177 · see citing works
Mazzocchi, A. R., Söker, S., & Skardal, A. (2019) · Applied Physics Reviews · doi:10.1063/1.5056188 · Cited by 174 · see citing works
PEG-4MAL hydrogels for human organoid generation, culture, and in vivo delivery
Cruz-Acuña, R., Quirós, M., Huang, S., Siuda, D., Spence, J. R., Nusrat, A., & García, A. J. (2018) · Nature Protocols · doi:10.1038/s41596-018-0036-3 · Cited by 168 · see citing works
Self-citationBrain organoids: an ensemble of bioassays to investigate human neurodevelopment and disease
Sidhaye, J., & Knoblich, J. A. (2020) · Cell Death and Differentiation · doi:10.1038/s41418-020-0566-4 · Cited by 167 · see citing works
A Chemically Defined Hydrogel for Human Liver Organoid Culture
Ye, S., Boeter, J. W. B., Mihajlovic, M., van Steenbeek, F. G., van Wolferen, M. E., Oosterhoff, L. A., Marsee, A., Caiazzo, M., van der Laan, L. J. W., Penning, L. C., et al. (2020) · Advanced Functional Materials · doi:10.1002/adfm.202000893 · Cited by 165 · see citing works
Creff, J., Courson, R., Mangeat, T., Foncy, J., Assié-Souleille, S., Thibault, C., Besson, A., & Malaquin, L. (2019) · Biomaterials · doi:10.1016/j.biomaterials.2019.119404 · Cited by 158 · see citing works
Human Gut-Associated Natural Killer Cells in Health and Disease
Poggi, A. D., Benelli, R., Venè, R., Costa, D., Ferrari, N., Tosetti, F., & Zocchi, M. R. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2019.00961 · Cited by 156 · see citing works
Barrila, J., Crabbé, A., Yang, J., Franco, K., Nydam, S. D., Forsyth, R. J., Davis, R. R., Gangaraju, S., Ott, C. M., Coyne, C. B., et al. (2018) · Infection and Immunity · doi:10.1128/iai.00282-18 · Cited by 159 · see citing works
Engineering hydrogel-based biomedical photonics: design, fabrication and applications
Guimarães, C. F., Ahmed, R., Marques, A., Reis, R., & Demirci, U. (2021) · Advances in Materials · doi:10.1002/adma.202006582 · Cited by 137 · see citing works
Promising Applications of Tumor Spheroids and Organoids for Personalized Medicine
Gilazieva, Z., Ponomarev, A. S., Rutland, C. S., Rizvanov, A. A., & Solovyeva, V. V. (2020) · Cancers · doi:10.3390/cancers12102727 · Cited by 150 · see citing works
Gut organoids: mini-tissues in culture to study intestinal physiology and disease
Almeqdadi, M., Mana, M., Roper, J., & Yilmaz, Ö. H. (2019) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.00300.2017 · Cited by 151 · see citing works
Non-matrigel scaffolds for organoid cultures
Kaur, S., Kaur, I., Rawal, P., Tripathi, D. M., & Vasudevan, A. (2021) · Cancer Letters · doi:10.1016/j.canlet.2021.01.025 · Cited by 150 · see citing works
Organoids in gastrointestinal diseases: From experimental models to clinical translation
Günther, C., Winner, B., Neurath, M. F., & Stappenbeck, T. S. (2022) · Gut · doi:10.1136/gutjnl-2021-326560 · Cited by 145 · see citing works
Transplantation of intestinal organoids into a mouse model of colitis
Watanabe, S., Kobayashi, S., Ogasawara, N., Okamoto, R., Nakamura, T., Watanabe, M., Jensen, K. B., & Yui, S. (2022) · Nature Protocols · doi:10.1038/s41596-021-00658-3 · Cited by 143 · see citing works
Kassis, T., Hernandez‐Gordillo, V., Langer, R., & Griffith, L. G. (2019) · Scientific Reports · doi:10.1038/s41598-019-48874-y · Cited by 141 · see citing works
Designing stem cell niches for differentiation and self-renewal
Donnelly, H., Salmerón‐Sánchez, M., & Dalby, M. J. (2018) · Journal of The Royal Society Interface · doi:10.1098/rsif.2018.0388 · Cited by 139 · see citing works
Harnessing Mechanobiology for Tissue Engineering
Kim, S., Uroz, M., Bays, J., & Chen, C. S. (2021) · Developmental Cell · doi:10.1016/j.devcel.2020.12.017 · Cited by 134 · see citing works
Human organoids-on-chips for biomedical research and applications
Wang, H., Ning, X., Zhao, F. H., Zhao, H., & Li, D. (2024) · Theranostics · doi:10.7150/thno.90492 · Cited by 138 · see citing works
Primary Cell-Derived Intestinal Models: Recapitulating Physiology
Dutton, J. S., Hinman, S. S., Kim, R., Wang, Y., & Allbritton, N. L. (2018) · Trends in biotechnology · doi:10.1016/j.tibtech.2018.12.001 · Cited by 131 · see citing works
Cell-type-specific signaling networks in heterocellular organoids
Qin, X., Sufi, J., Vlckova, P., Kyriakidou, P., Acton, S. E., Li, V. S. W., Nitz, M., & Tape, C. J. (2020) · Nature Methods · doi:10.1038/s41592-020-0737-8 · Cited by 130 · see citing works
Biomimetic hydrogel supports initiation and growth of patient-derived breast tumor organoids
Prince, E., Cruickshank, J., Ba-Alawi, W., Hodgson, K., Haight, J., Tobin, C., Wakeman, A., Avoulov, A., Topolskaia, V., Elliott, M. J., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-28788-6 · Cited by 135 · see citing works
Recent advances in organoid development and applications in disease modeling
Rauth, S., Karmakar, S., Batra, S. K., & Ponnusamy, M. P. (2021) · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer · doi:10.1016/j.bbcan.2021.188527 · Cited by 133 · see citing works
Research Progress, Challenges, and Breakthroughs of Organoids as Disease Models
Huang, Y., Huang, Z., Tang, Z., Chen, Y., Huang, M., Liu, H., Huang, W., Ye, Q., & Jia, B. (2021) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2021.740574 · Cited by 128 · see citing works
Recent advances in lung organoid development and applications in disease modeling
Vazquez‐Armendariz, A. I., & Tata, P. R. (2023) · Journal of Clinical Investigation · doi:10.1172/jci170500 · Cited by 128 · see citing works
Caprio, N. D., & Burdick, J. A. (2022) · Acta Biomaterialia · doi:10.1016/j.actbio.2022.09.052 · Cited by 122 · see citing works
Advances in Spheroids and Organoids on a Chip
Fang, G., Chen, Y., Lu, H., & Jin, D. (2023) · Advanced Functional Materials · doi:10.1002/adfm.202215043 · Cited by 127 · see citing works
Recent advances in defined hydrogels in organoid research
Gan, Z., Qin, X., Liu, H., Liu, J., & Qin, J. (2023) · Bioactive Materials · doi:10.1016/j.bioactmat.2023.06.004 · Cited by 127 · see citing works
Decellularized Extracellular Matrix for Remodeling Bioengineering Organoid's Microenvironment
Zhu, L., Yuhan, J., Yu, H., Zhang, B., Huang, K., & Zhu, L. (2023) · Small · doi:10.1002/smll.202207752 · Cited by 123 · see citing works
Viscoelastic Biomaterials for Tissue Regeneration
Wu, D. T. S., Jeffreys, N. C., Diba, M., & Mooney, D. J. (2022) · Tissue Engineering Part C Methods · doi:10.1089/ten.tec.2022.0040 · Cited by 121 · see citing works
Zeng, Z., Zhu, M., Chen, L., Zhang, Y., Lu, T., Deng, Y., Ma, W., Xu, J., Huang, C., & Xiong, R. (2022) · Composites Part B Engineering · doi:10.1016/j.compositesb.2022.110313 · Cited by 119 · see citing works
Multi-functional chitosan-based smart hydrogels mediated biomedical application
Mu, M., Li, X., Tong, A., & Guo, G. F. (2019) · Expert Opinion on Drug Delivery · doi:10.1080/17425247.2019.1580691 · Cited by 116 · see citing works
Engineering the Extracellular Matrix for Organoid Culture
Heo, J. H., Kang, D., Seo, S. J., & Jin, Y. (2022) · International Journal of Stem Cells · doi:10.15283/ijsc21190 · Cited by 116 · see citing works
Gnecco, J. S., Brown, A., Buttrey, K., Ives, C., Goods, B. A., Baugh, L. M., Hernandez‐Gordillo, V., Loring, M., Isaacson, K., & Griffith, L. G. (2023) · Med · doi:10.1016/j.medj.2023.07.004 · Cited by 122 · see citing works
Diba, M., Spaans, S., Hendrikse, S. I. S., Bastings, M. M. C., Schotman, M. J. G., van Sprang, J. F., Wu, D. J., Hoeben, F. J. M., Janssen, H. M., & Dankers, P. Y. W. (2021) · Advanced Materials · doi:10.1002/adma.202008111 · Cited by 111 · see citing works
Long-term expansion, genomic stability and in vivo safety of adult human pancreas organoids
Georgakopoulos, N., Prior, N., Angres, B., Mastrogiovanni, G., Cagan, A., Harrison, D., Hindley, C. J., Arnes-Benito, R., Liau, S.-S., Curd, A., et al. (2020) · BMC Developmental Biology · doi:10.1186/s12861-020-0209-5 · Cited by 112 · see citing works
Recent advances in bio-orthogonal and dynamic crosslinking of biomimetic hydrogels
Arkenberg, M. R., Nguyen, H. D., & Lin, C. (2020) · Journal of Materials Chemistry B · doi:10.1039/d0tb01429j · Cited by 113 · see citing works
Poggi, A. D., Varesano, S., & Zocchi, M. R. (2018) · Frontiers in Immunology · doi:10.3389/fimmu.2018.00262 · Cited by 111 · see citing works
Composite Hydrogels in Three-Dimensional in vitro Models
Zhao, Z., Vizetto‐Duarte, C., Moay, Z. K., Setyawati, M. I., Rakshit, M., Kathawala, M. H., & Ng, K. W. (2020) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2020.00611 · Cited by 109 · see citing works
Electrophysiological Analysis of Brain Organoids: Current Approaches and Advancements
Passaro, A. P., & Stice, S. L. (2021) · Frontiers in Neuroscience · doi:10.3389/fnins.2020.622137 · Cited by 111 · see citing works
Engineering Hydrogels for the Development of Three-Dimensional In Vitro Models
Maji, S., & Lee, H. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23052662 · Cited by 111 · see citing works
Polymer Hydrogels to Guide Organotypic and Organoid Cultures
Magno, V., Meinhardt, A., & Werner, C. (2020) · Advanced Functional Materials · doi:10.1002/adfm.202000097 · Cited by 106 · see citing works
Harnessing the secreted extracellular matrix to engineer tissues
Blache, U., Stevens, M. M., & Gentleman, E. (2020) · Nature Biomedical Engineering · doi:10.1038/s41551-019-0500-6 · Cited by 103 · see citing works
Modeling Cell Communication in Cancer With Organoids: Making the Complex Simple
Fiorini, E., Veghini, L., & Corbo, V. (2020) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2020.00166 · Cited by 103 · see citing works
García, J. R., Quirós, M., Han, W. M., O’Leary, M. N., Cox, G. N., Nusrat, A., & Garcı́a, A. J. (2019) · Biomaterials · doi:10.1016/j.biomaterials.2019.119403 · Cited by 103 · see citing works
Self-citationHushka, E. A., Yavitt, F. M., Brown, T. E., Dempsey, P. J., & Anseth, K. S. (2020) · Advanced Healthcare Materials · doi:10.1002/adhm.201901214 · Cited by 104 · see citing works
Intestinal organoids: A new paradigm for engineering intestinal epithelium in vitro
Rahmani, S., Breyner, N. M., Su, H.-M., Verdu, E. F., & Didar, T. F. (2019) · Biomaterials · doi:10.1016/j.biomaterials.2018.12.006 · Cited by 98 · see citing works
Actuation enhances patterning in human neural tube organoids
Fattah, A. R. A., Daza, B., Rustandi, G., Berrocal-Rubio, M. Á., Gorissen, B., Poovathingal, S. K., Davie, K., Fano, J. B., Cóndor, M., Cao, X., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-22952-0 · Cited by 102 · see citing works
Extracellular matrix requirements for gastrointestinal organoid cultures
Rezakhani, S., Gjorevski, N., & Lutolf, M. P. (2021) · Biomaterials · doi:10.1016/j.biomaterials.2021.121020 · Cited by 100 · see citing works
Engineered Matrices Enable the Culture of Human Patient‐Derived Intestinal Organoids
Hunt, D. R., Klett, K. C., Mascharak, S., Wang, H., Gong, D. N., Lou, J., Li, X., Cai, P. C., Suhar, R. A., Co, J. Y., et al. (2021) · Advanced Science · doi:10.1002/advs.202004705 · Cited by 96 · see citing works
Biologically inspired approaches to enhance human organoid complexity
Holloway, E. M., Capeling, M. M., & Spence, J. R. (2019) · Development · doi:10.1242/dev.166173 · Cited by 96 · see citing works
Self-citationEngineered 3D hydrogels with full-length fibronectin that sequester and present growth factors
Trujillo, S., González‐García, C., Rico, P., Reid, A., Windmill, J. F. C., Dalby, M. J., & Salmerón‐Sánchez, M. (2020) · Biomaterials · doi:10.1016/j.biomaterials.2020.120104 · Cited by 102 · see citing works
Organoids of the female reproductive tract
Chumduri, C., & Turco, M. Y. (2021) · Journal of Molecular Medicine · doi:10.1007/s00109-020-02028-0 · Cited by 99 · see citing works
Ruiter, F. A. A., Morgan, F. L. C., Roumans, N. J. T., Schumacher, A., Slaats, G. G. G., Moroni, L., LaPointe, V. L. S., & Baker, M. B. (2022) · Advanced Science · doi:10.1002/advs.202200543 · Cited by 92 · see citing works
Synthetic scaffolds for 3D cell cultures and organoids: applications in regenerative medicine
Marchini, A., & Gelain, F. (2022) · Critical Reviews in Biotechnology · doi:10.1080/07388551.2021.1932716 · Cited by 91 · see citing works
Kim, S. K., Kim, Y. H., Park, S., & Cho, S. (2021) · Acta Biomaterialia · doi:10.1016/j.actbio.2021.03.002 · Cited by 92 · see citing works
Programming hydrogels to probe spatiotemporal cell biology
Qazi, T. H., Blatchley, M. R., Davidson, M. D., Yavitt, F. M., Cooke, M. E., Anseth, K. S., & Burdick, J. A. (2022) · Cell stem cell · doi:10.1016/j.stem.2022.03.013 · Cited by 96 · see citing works
- Authors
- Cruz-Acuña, R., Quirós, M., Farkas, A. E., Dedhia, P. H., Huang, S., Siuda, D., García-Hernández, V., Miller, A. J., Spence, J. R., Nusrat, A., & García, A. J.
- Affiliations
- University of Michigan (US)
- HUN-REN Szegedi Biológiai Kutatóközpont (HU)
- Corresponding author
- Spence, Jason R.
- Nusrat, Asma
- ORCID
- Venue
- Nature Cell Biology
- Published
- 2017-10-23
- Volume
- 19
- Issue
- 11
- Pages
- 1326-1335
- ISSN
- 1465-7392 (ISSN-L)
- 1476-4679
- PMC
- PMC5664213
- OpenAlex
- W2766832099
- Cited by
- 558
- References
- 38
- Citations by year
- 2026: 47 · 2025: 72 · 2024: 42 · 2023: 64 · 2022: 71 · 2021: 99 · 2020: 76 · 2019: 51 · 2018: 32 · 2017: 3
- FWCI
- 17.06
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Cell Biology (publishedVersion)
- PubMed (publishedVersion)
- Repository of the Academy's Library (Library of the Hungarian Academy of Sciences) (acceptedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Georgia Institute of Technology
- University of Georgia
- Crohn's and Colitis Foundation (326912)
- National Institutes of Health (UL1TR000454)
- National Heart, Lung, and Blood Institute (R01HL119215, R21HL115372)
- National Institute of General Medical Sciences (T32GM007315)
- National Institute of Allergy and Infectious Diseases (U19AI116482)
- National Institute of Diabetes and Digestive and Kidney Diseases (U24DK085532, R01DK055679, R56DK089763, R29DK055679, R01DK059888, U01DK085532, U01DK103141, R01DK089763)
- National Institute of Arthritis and Musculoskeletal and Skin Diseases (R01AR062368, R01AR062920)
- National Institute of Dental and Craniofacial Research (T32DE007057)
- National Center for Advancing Translational Sciences
- Eunice Kennedy Shriver National Institute of Child Health and Human Development (T32HD007505)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Medicine › Hydrogels: synthesis, properties, applications
- Health Sciences › Medicine › Surgery › Tissue Engineering and Regenerative Medicine
- Physical Sciences › Engineering › Biomedical Engineering › 3D Printing in Biomedical Research
- Keywords
- synthetic hydrogels, human intestinal organoids, pluripotent stem cells, organoid expansion, intestinal mucosal injury, regenerative medicine
- MeSH terms
- Animals, Cell Differentiation, Cells, Cultured, Colon, Extracellular Matrix, Humans, Intestinal Mucosa, Intestines, Organoids, Regeneration, Wound Healing, Hydrogels, Pluripotent Stem Cells, Mice
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