QuPath: Open source software for digital pathology image analysis

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PD-1 and PD-L1 Immune Checkpoint Blockade to Treat Breast Cancer

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Hover-Net: Simultaneous segmentation and classification of nuclei in multi-tissue histology images

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Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer’s Disease

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Single-Cell Analysis of Crohn’s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy

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Altered human oligodendrocyte heterogeneity in multiple sclerosis

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Lung adenocarcinoma promotion by air pollutants

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AI in Medical Imaging Informatics: Current Challenges and Future Directions

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Overview of multiplex immunohistochemistry/immunofluorescence techniques in the era of cancer immunotherapy

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Pan-cancer image-based detection of clinically actionable genetic alterations

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A molecular single-cell lung atlas of lethal COVID-19

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Tissue-resident macrophages provide a pro-tumorigenic niche to early NSCLC cells

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Pan-cancer single-cell analysis reveals the heterogeneity and plasticity of cancer-associated fibroblasts in the tumor microenvironment

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Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver

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Hallmarks of transcriptional intratumour heterogeneity across a thousand tumours

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Spatial profiling technologies illuminate the tumor microenvironment

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A deep learning model to predict RNA-Seq expression of tumours from whole-slide images

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SARS-CoV-2 infection triggers profibrotic macrophage responses and lung fibrosis

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Artificial intelligence as the next step towards precision pathology

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Capillary cell-type specialization in the alveolus

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A single‐cell RNA expression atlas of normal, preneoplastic and tumorigenic states in the human breast

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Treatment-Induced Tumor Dormancy through YAP-Mediated Transcriptional Reprogramming of the Apoptotic Pathway

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Immune imprinting, breadth of variant recognition, and germinal center response in human SARS-CoV-2 infection and vaccination

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A multimodal generative AI copilot for human pathology

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Artificial intelligence in histopathology: enhancing cancer research and clinical oncology

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Hexokinase 2-mediated gene expression via histone lactylation is required for hepatic stellate cell activation and liver fibrosis

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Spatially confined sub-tumor microenvironments in pancreatic cancer

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A Practical Guide to Whole Slide Imaging: A White Paper From the Digital Pathology Association

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Trastuzumab deruxtecan in metastatic breast cancer with variable HER2 expression: the phase 2 DAISY trial

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Intratumoral dendritic cell–CD4+ T helper cell niches enable CD8+ T cell differentiation following PD-1 blockade in hepatocellular carcinoma

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Introduction to Digital Image Analysis in Whole-slide Imaging: A White Paper from the Digital Pathology Association

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A neutrophil response linked to tumor control in immunotherapy

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Tutorial: guidance for quantitative confocal microscopy

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IL-1β+ macrophages fuel pathogenic inflammation in pancreatic cancer

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Promotion of cholangiocarcinoma growth by diverse cancer-associated fibroblast subpopulations

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Astrocytes and oligodendrocytes undergo subtype-specific transcriptional changes in Alzheimer’s disease.

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Integrative spatial analysis reveals a multi-layered organization of glioblastoma

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Metformin inhibition of mitochondrial ATP and DNA synthesis abrogates NLRP3 inflammasome activation and pulmonary inflammation

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CellViT: Vision Transformers for precise cell segmentation and classification

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Lymph node colonization induces tumor-immune tolerance to promote distant metastasis

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Spatial Positioning and Matrix Programs of Cancer-Associated Fibroblasts Promote T-cell Exclusion in Human Lung Tumors

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Segment Anything for Microscopy

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LABKIT: Labeling and Segmentation Toolkit for Big Image Data

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Clinical-Grade Detection of Microsatellite Instability in Colorectal Tumors by Deep Learning

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Modelling human blastocysts by reprogramming fibroblasts into iBlastoids

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Deep learning-enabled virtual histological staining of biological samples

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Single-cell analysis of human non-small cell lung cancer lesions refines tumor classification and patient stratification

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Feeding-dependent VIP neuron–ILC3 circuit regulates the intestinal barrier

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Cellular Senescence Is Immunogenic and Promotes Antitumor Immunity

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Multimodal data integration using machine learning improves risk stratification of high-grade serous ovarian cancer

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Artificial intelligence for digital and computational pathology

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Cancer-associated fibroblast compositions change with breast cancer progression linking the ratio of S100A4+ and PDPN+ CAFs to clinical outcome

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GATA6 expression distinguishes classical and basal-like subtypes in advanced pancreatic cancer

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Single-cell analysis defines a pancreatic fibroblast lineage that supports anti-tumor immunity

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The immunoregulatory landscape of human tuberculosis granulomas

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PD-1 combination therapy with IL-2 modifies CD8+ T cell exhaustion program

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Ovarian cancer mutational processes drive site-specific immune evasion

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Postmortem Cortex Samples Identify Distinct Molecular Subtypes of ALS: Retrotransposon Activation, Oxidative Stress, and Activated Glia

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High-definition spatial transcriptomic profiling of immune cell populations in colorectal cancer

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Protein crystallization promotes type 2 immunity and is reversible by antibody treatment

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Spatial mapping of protein composition and tissue organization: a primer for multiplexed antibody-based imaging

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A reference human induced pluripotent stem cell line for large-scale collaborative studies

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Mechanisms of Resistance to Oncogenic KRAS Inhibition in Pancreatic Cancer

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Investigating immune and non-immune cell interactions in head and neck tumors by single-cell RNA sequencing

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