Cited by 138Machine Learning in HealthcareDomain Adaptation and Few-Shot LearningSepsis Diagnosis and Treatment

Evaluation of domain generalization and adaptation on improving model robustness to temporal dataset shift in clinical medicine

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Guo, Lin Lawrence, Pfohl, Stephen R., Fries, Jason, Johnson, Alistair E. W., Posada, Jose, Aftandilian, Catherine, Shah, Nigam, Sung, Lillian·2022·Scientific Reports

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Abstract

Temporal dataset shift associated with changes in healthcare over time is a barrier to deploying machine learning-based clinical decision support systems. Algorithms that learn robust models by estimating invariant properties across time periods for domain generalization (DG) and unsupervised domain adaptation (UDA) might be suitable to proactively mitigate dataset shift. The objective was to characterize the impact of temporal dataset shift on clinical prediction models and benchmark DG and UDA algorithms on improving model robustness. In this cohort study, intensive care unit patients from the MIMIC-IV database were categorized by year groups (2008–2010, 2011–2013, 2014–2016 and 2017–2019). Tasks were predicting mortality, long length of stay, sepsis and invasive ventilation. Feedforward neural networks were used as prediction models. The baseline experiment trained models using empirical risk minimization (ERM) on 2008–2010 (ERM[08–10]) and evaluated them on subsequent year groups. DG experiment trained models using algorithms that estimated invariant properties using 2008–2016 and evaluated them on 2017–2019. UDA experiment leveraged unlabelled samples from 2017 to 2019 for unsupervised distribution matching. DG and UDA models were compared to ERM[08–16] models trained using 2008–2016. Main performance measures were area-under-the-receiver-operating-characteristic curve (AUROC), area-under-the-precision-recall curve and absolute calibration error. Threshold-based metrics including false-positives and false-negatives were used to assess the clinical impact of temporal dataset shift and its mitigation strategies. In the baseline experiments, dataset shift was most evident for sepsis prediction (maximum AUROC drop, 0.090; 95% confidence interval (CI), 0.080–0.101). Considering a scenario of 100 consecutively admitted patients showed that ERM[08–10] applied to 2017–2019 was associated with one additional false-negative among 11 patients with sepsis, when compared to the model applied to 2008–2010. When compared with ERM[08–16], DG and UDA experiments failed to produce more robust models (range of AUROC difference, − 0.003 to 0.050). In conclusion, DG and UDA failed to produce more robust models compared to ERM in the setting of temporal dataset shift. Alternate approaches are required to preserve model performance over time in clinical medicine.

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  • Most DL papers in the literature corpus investigate the robustness of a model, while only few investigate generalisability or distribution shift.

    “When it comes to the concrete behaviour change of the DL algorithm, most of the DL papers in the literature corpus investigate the robustness of a model, i.e. the stable behaviour of a model when facing erroneous or a limited amount of inputs. Only few records investigate generalisability119,144,145 or distribution shift139,192, a model’s capability of coping with new, unseen data.”

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Research works printed but not linked: 2

  1. [16]Varnik V Moody JE Hanson SJ Lippmann RP Principles of risk minimization for learning theory Advances in Neural Information Processing Systems 1991 NeurIPS 831 838
  2. [41]Zhao, H., Combes, R. T. D., Zhang, K. & Gordon, G. On learning invariant representations for domain adaptation. In 36th International Conference on Machine Learning, ICML 2019 7523–7532 (PMLR, 2019).

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Authors
Guo, L. L., Pfohl, S. R., Fries, J., Johnson, A. E. W., Posada, J., Aftandilian, C., Shah, N., & Sung, L.
Affiliations
  • Hospital for Sick Children (CA)
  • Stanford University (US)
Corresponding author
Sung, Lillian
Venue
Scientific Reports
Published
2022-02-17
Volume
12
Issue
1
Pages
2726-2726
ISSN
2045-2322 (ISSN-L)
OpenAlex
W4221077687
Cited by
103
References
57
Citations by year
2026: 34 · 2025: 29 · 2024: 15 · 2023: 15 · 2022: 9 · 2021: 1
FWCI
5.59
Type
journal article
Language
en
Open access
Locations
  • Scientific Reports (publishedVersion, cc-by)
  • medRxiv (acceptedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Topics
  • Physical Sciences › Computer Science › Artificial Intelligence › Machine Learning in Healthcare
  • Physical Sciences › Computer Science › Artificial Intelligence › Domain Adaptation and Few-Shot Learning
  • Health Sciences › Medicine › Epidemiology › Sepsis Diagnosis and Treatment
Keywords
domain generalization, unsupervised domain adaptation, model robustness, clinical prediction model, intensive care unit patients, MIMIC-IV, sepsis prediction, mortality prediction, length of stay prediction, empirical risk minimization, clinical decision support systems, model calibration, feedforward neural networks
MeSH terms
Aged, Aged, 80 and over, Female, Humans, Intensive Care Units, Length of Stay, Male, Middle Aged, Models, Biological, Databases, Factual, Neural Networks, Computer, Sepsis

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