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Linking the Belowground Microbial Composition, Diversity and Activity to Soilborne Disease Suppression and Growth Promotion of Tomato Amended with Biochar
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Biochar, in addition to sequestering carbon, ameliorating soil, and improving plant performance, can impact foliar and soilborne plant diseases. Nevertheless, the mechanisms associated with suppression of soilborne diseases and improved plant performances are not well understood. This study is designed to establish the relationships between biochar-induced changes in rhizosphere microbial community structure, taxonomic and functional diversity, and activity with soilborne disease suppression and enhanced plant performance in a comprehensive fashion. Biochar suppressed Fusarium crown and root-rot of tomato and simultaneously improved tomato plant growth and physiological parameters. Furthermore, biochar reduced Fusarium root colonization and survival in soil, and increased the culturable counts of several biocontrol and plant growth promoting microorganisms. Illumina sequencing analyses of 16S rRNA gene revealed substantial differences in rhizosphere bacterial taxonomical composition between biochar-amended and non-amended treatments. Moreover, biochar amendment caused a significant increase in microbial taxonomic and functional diversity, microbial activities and an overall shift in carbon-source utilization. High microbial taxonomic and functional diversity and activity in the rhizosphere has been previously associated with suppression of diseases caused by soilborne pathogens and with plant growth promotion, and may collectively explain the significant reduction of disease and improvement in plant performance observed in the presence of biochar.
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“Jaiswal et al. (2017) also found substantial differences in the taxonomical composition of the rhizosphere bacterial community after biochar addition to an artificial soil in a pot experiment.”
From Comparing straw, compost, and biochar regarding their suitability as agricultural soil amendments to affect soil structure, nutrient leaching, microbial communities, and the fate of pesticides (2021) · cites this paper as Jaiswal et al., 2017
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“They were furthermore able to link this, together with the increased microbial functional diversity and activity, to the observed suppression of plant diseases and improved plant performance upon biochar amendment.”
From Comparing straw, compost, and biochar regarding their suitability as agricultural soil amendments to affect soil structure, nutrient leaching, microbial communities, and the fate of pesticides (2021) · cites this paper as Jaiswal et al., 2017
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Plant-Mediated Above- Belowground Interactions: A Phytobiome Story
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“The inoculated treatments contained 1% FORC (w/w), prepared according to the protocol previously described by [38].”
Self-citationBiochar and Trichoderma Reduce Containerized Poinsettia Root Rot Caused by Pythium aphanidermatum
Yu, P., Ong, K. L., Ueckert, J., & Gu, M. (2023) · HortScience · doi:10.21273/hortsci17203-23 · Cited by 9
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Effects of Meloidogyne incognita on the fungal community in tobacco rhizosphere
Chen, X.-L., Gao, L.-L., Deng, X.-P., Yang, Y.-F., Wang, J.-W., Zhang, Z., Cai, Y.-Z., Huang, F.-Y., Yang, M., Tong, W., et al. (2022) · Revista Brasileira de Ciência do Solo · doi:10.36783/18069657rbcs20210127 · Cited by 8
“The scientific community has a great interest in developing strategies that reshape the rhizosphere microbial community to attain stable and more diverse conditions to prevent or mitigate pathogen/pest occurrence (Jaiswal et al., 2017).”
BackgroundAnalyses of 37 composts revealed microbial taxa associated with disease suppressiveness
Logo, A., Boppré, B., Fuchs, J. G., Maurhofer, M., Oberhänsli, T., Thuerig, B., Widmer, F., Mayerhofer, J., & Flury, P. (2025) · Applied and Environmental Microbiology · doi:10.1128/aem.01100-25 · Cited by 7
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“…behind controlling plant pathogens, comprises of enhancement of soil structural and biochemical properties 23 , induction of defense responses to plants 24 , augmentation in microbial diversity 25 , improved nutrient availability in soil 26 , hindrance in pathogen survival, and establishment 27 .”
BackgroundWang, J., Li, S., Yin, H., Riaz, M., Liu, X., & Zhang, M. (2025) · Applied Soil Ecology · doi:10.1016/j.apsoil.2025.106107 · Cited by 6
Yan, Z., Xing, Y., Ma, C., Li, X., Duan, Y., Wang, X., Liu, M., Rahman, M. K. U., & Zhou, X.-G. (2025) · Journal of soil science and plant nutrition · doi:10.1007/s42729-025-02441-9 · Cited by 6
“Biochar can significantly increase the abundance of nitrogen-fixing microorganisms in soil, such as some taxa belonging to Brevundimonas and Sphin-gomonas , thereby promoting tomato growth (Jaiswal et al. 2017).”
Másmela-Mendoza, J., & Moreno-Velandia, C. A. (2022) · Rhizosphere · doi:10.1016/j.rhisph.2022.100475 · Cited by 6
Biochar and its Use in Soil: Lessons from Temperate Agriculture
Oelbermann, M. (2020) · World Journal of Agriculture and Soil Science · doi:10.33552/wjass.2020.05.000610 · Cited by 6
“Its labile carbon content may stimulate microbial activity and interact with roots and soil bacteria, promoting plant-growth-beneficial microorganisms in peat and in soil [2,9-11].”
BackgroundOrganic Amendments to Alleviate Plant Biotic Stress
Azim, K. (2019) · Springer eBooks · doi:10.1007/978-981-13-6043-5_8 · Cited by 9
Peng, J., Hou, J.-F., Liu, H., Mavrodi, D., Mavrodi, O., Sun, F.-F., Shen, M.-C., Wang, X., Dang, K., Yan, M., et al. (2025) · Geoderma · doi:10.1016/j.geoderma.2025.117273 · Cited by 5
Biochar reduces containerized pepper blight caused by Phytophthora Capsici
Yu, P., Qin, K., Crosby, K. M., Ong, K. L., Gentry, T. J., & Gu, M. (2024) · Scientific Reports · doi:10.1038/s41598-024-76712-3 · Cited by 6
“Different types of raw material-derived biochar could also lead to different pathogen controlling effects, as eucalyptus wood and organic waste-derived biochar extracts showed no effects on suppressing Fusarium colonization 41 .”
Yang, S., Chio, C., Qin, W., Pei, Y., Pei, G., Zhu, Y., & Li, H. (2023) · Scientia Horticulturae · doi:10.1016/j.scienta.2023.112707 · Cited by 6
Liao, H., Zheng, C., Li, J., Long, J., & Li, Y. (2024) · Soil Ecology Letters · doi:10.1007/s42832-023-0219-x · Cited by 5
Yi, Y.-S., Cho, H.-J., Heo, J.-Y., & Lee, Y. H. (2019) · 한국토양비료학회지 · doi:10.7745/kjssf.2019.52.4.457 · Cited by 8
“…2009; Atkinson et al., 2010; Spokas et al., 2010; Agegnehu et al., 2016), 작물에 대한 시용효과 (Nigussie et al., 2012; Carter et al., 2013; Akhtar et al., 2014; Liu et al., 2014; Blackwell et al., 2015; Pandey et al., 2016; Sun et al., 2016; Jaiswal et al., 2017), 토양 미생물에 미치는 영향 (Lehmann et al., 2011;…”
Biochar for sustainable agriculture: Prospects and implications
Vanapalli, K. R., Samal, B., Dubey, B., & Bhattacharya, J. (2021) · Advances in chemical pollution, environmental management and protection · doi:10.1016/bs.apmp.2021.08.008 · Cited by 8
Li, L., Wang, L.-L., Ma, F., & He, M.-M. (2026) · Agriculture, Ecosystems & Environment. Applied Soil Ecology · doi:10.1016/j.apsoil.2025.106613 · Cited by 4
Biochar-Assisted Agriculture: From Healthy Soil to Healthy Plants
Liu, C., Wang, C., Shang, S., Ma, J., Shan, S., Qian, Y., Li, L., & Pan, G. (2025) · Plants · doi:10.3390/plants14213273 · Cited by 6
“Growing evidence supports the role of biochar in immobilizing allelochemicals derived from root exudates [45] and suppressing soil-borne pathogens [44].”
Restoring soil health from long-term intensive Robusta coffee cultivation in Vietnam: “a review”
Van, L. N., Quang, D. N., Herrmann, L., Enez, A., Bräu, L., Nguyen, V. C., Katz, M., & Lesueur, D. (2025) · Agronomy for Sustainable Development · doi:10.1007/s13593-025-01023-4 · Cited by 8
“…community, and function, especially significantly enhancing the abundance of beneficial biocontrol fungi, promoting the induction of plant defenses, increasing nutrient and space competition, and producing pathogen-inhibiting compounds (Jaiswal et al 2017; Abbott et al 2018; Deng et al 2024).”
InfluentialFan, C.-H., Wang, W.-K., Xu, Z.-Y., Tsai, S., Chien, C.-C., Kuo, C.-H., Chen, B., Wang, K.-T., Chang, C. Y., Wu, T., et al. (2025) · Aquaculture · doi:10.1016/j.aquaculture.2025.742846 · Cited by 4
Production and application of biochar: a bibliometric–bibliographic study from 2004 to 2023
Fikri, N., Hattafi, Y., Mardi, L., Amarty, F. E., Hassani, F. E., Benaabidate, L., & Lahrach, A. (2025) · Journal of Environmental Engineering and Science · doi:10.1680/jenes.24.00107 · Cited by 5
Cheng, X., Li, X., Cai, Z., Wang, Z., & Zhou, J. (2024) · Plants · doi:10.3390/plants13182627 · Cited by 6
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Effects of biochar and Trichoderma on bacterial community diversity in continuous cropping soil
Cao, X., Zhang, N., Zeng, X., Lan, Q., Ma, N., & Wu, C. (2022) · Horticulture Environment and Biotechnology · doi:10.1007/s13580-021-00373-8 · Cited by 23
Jia, C., Bai, J., Luo, Z., Tian, L., & Hou, Z. (2026) · Plant and Soil · doi:10.1007/s11104-026-08591-8 · Cited by 4
“…biochar proportion in T2 may have contributed to stronger environmental buffering and a more heterogeneous belowground habitat, consistent with previous reports that biochar can suppress Fusarium -related disease while promoting belowground microbial diversity and activity (Jaiswal et al. 2017).”
Shyam, S., & Sarma, H. (2026) · Journal of Environmental Management · doi:10.1016/j.jenvman.2026.128840 · Cited by 3
Exploring Biochar Impacts Through Omics Sciences: Enhancing Rhizobiome Understanding
Samuditha, S., Fernandez, A. B., Siddique, K. H. M., Biswas, J. K., & Vithanage, M. S. (2025) · Journal of soil science and plant nutrition · doi:10.1007/s42729-025-02650-2 · Cited by 3
Fusarium Wilt of Coriander: Root Cause Analysis and Varietal Tolerance Development
Chaimovitsh, D., Kahane-Achinoam, T., Nuriel, O., Harel, Y. M., Silverman, D., Nitzan, N., Frenkel, O., & Gonda, I. (2024) · Plants · doi:10.3390/plants13152135 · Cited by 3
“The PCR product was purified by a PCR DNA Fragments Extraction kit (Geneaid, New Taipei City, Taiwan, https://www.geneaid.com/) and sequenced by Hylab (Rehovot, Israel, https://www.hylabs.co.il/).”
MethodSelf-citationBiochar and fertiliser interactions in crop and pasture production
Solaiman, Z. M. (2022) · Australian Journal of Agricultural Research · doi:10.1071/cp22310 · Cited by 4
Jiang, N., Wu, M., Li, G., Li, P., Liu, M., & Li, Z.-P. (2022) · Land Degradation & Development · doi:10.1002/ldr.4275 · Cited by 3
“Usually, there is a positive correlation between soil microbial diversity and pathogen suppression (Jaiswal et al., 2017).”
BackgroundBiochar a sustainable solution for wastewater treatment: Current status and perspectives
Kapoor, R. T. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-822503-5.00008-4 · Cited by 4
The influence of bio-char on Common scab disease of potatoes
El-Hafez, O. A. A., & Amer, M. (2021) · Journal of Plant Protection and Pathology /Journal of Plant Protection and Pathology · doi:10.21608/jppp.2021.178963 · Cited by 2
“(Jaiswal et al., 2017).”
BackgroundTrichoderma metabolites: Versatile weapons against plant pathogens
Jaiswal, A., & Khadka, R. (2020) · doi:10.1016/b978-0-12-821007-9.00008-5 · Cited by 3
Self-citationPecqueur, I., Huybrechts, M., Joos, L., Jozefczak, M., Lataf, A., Hemelrijck, W. V., Boonen, M., Tender, C. A. D., Vandamme, D., Debode, J., et al. (2026) · Scientia Horticulturae · doi:10.1016/j.scienta.2026.114875 · Cited by 2
Chen, D., Yao, Y., Liu, D., Wang, W., Tian, B., Fang, A., Yu, Y., Bi, C., Xiao, R., Li, Z., et al. (2026) · Agronomy for Sustainable Development · doi:10.1007/s13593-026-01094-x · Cited by 3
Elad, Y., Graber, E. R., Gupta, R., Rav-David, D., Leibman-Markus, M., Kumar-Jaiswal, A., Sela, N., Tsechansky, L., Schneider, A., & Bar, M. (2025) · Plant Stress · doi:10.1016/j.stress.2025.101173 · Cited by 2
Self-citationBiochar adsorbs beneficial airborne bacteria to inhibit wheat Fusarium head blight
Guo, J., Li, X., Xu, R., Du, C., Xiao, X., Chen, K., Chen, H., Zhang, Y., Wang, Z., & Sun, Z. (2024) · Plant and Soil · doi:10.1007/s11104-024-07166-9 · Cited by 1
“However, in severe epidemic situations, it is difficult to maintain toxin levels below critical thresholds (Buer-stmayr et al. 2020), and prolonged use of the same chemical against FHB was found to increase patho-gen resistance (Jaiswal et al. 2017; Singh et al. 2016).”
Fei-Baffoe, B., Amuah, E., Annan, E., Sulemana, A., Sackey, L. N., Miezah, K., Bentil, J., Nang, D. B., & Kazapoe, R. (2024) · Cleaner and Circular Bioeconomy · doi:10.1016/j.clcb.2024.100116 · Cited by 2
Osei, G. K., Abazinge, M. D., Ngatia, L. W., Chauhan, A., Bolques, A., Jagoe, C. H., & Pathak, A. K. (2022) · Applied Microbiology · doi:10.3390/applmicrobiol2030051 · Cited by 2
al-Mayahi, S. H. A., & Hassan, A. (2021) · doi:10.51470/plantarchives.2021.v21.s1.201 · Cited by 2
Relevance of Microbial Diversity in Implicating Soil Restoration and Health Management
Devi, S., & Soni, R. (2019) · Soil Health Restoration and Management · doi:10.1007/978-981-13-8570-4_5 · Cited by 2
Ali, Z., Rehman, S., & Naseem, S. (2025) · PHAGE · doi:10.1177/26416549251384321
“77 Also, greater microbiome diversity is linked to plant health and chances of disease, 78 a phage population might have a bene-fi cial and positive effect on the microbiome of plants.”
Sclerotia-Mediated Soil Microbiome Modulation in Rice–Rapeseed Cropping Systems
Mehmood, M. A., Wang, J., Cheng, J.-S., Xie, J.-T., Jiang, D., & Fu, Y.-P. (2025) · Journal of Fungi · doi:10.3390/jof11100755 · Cited by 1
“Furthermore, clean reads longer than 225 bp and with a minimum score of Q30 were retained, and reads with homopolymer > 8 bases were removed [52].”
Ju, Y.-C., Yoon, Y.-E., Choe, H., Godagedara, L. T., Lee, K.-A., Kim, S. C., Kim, Y.-N., & Lee, Y.-B. (2024) · Korean Journal of Soil Science and Fertilizer · doi:10.7745/kjssf.2024.57.2.096 · Cited by 1
“이 외에도 , 바이오차 시용에 의한 산성토양 개선 및 미생물 활성 증가 (Paz-Ferreiro et al., 2014; Chen et al., 2017), 중금속 부동화 (Qasim et al., 2021; Chen et al., 2023) 및 작물의 생산량 증대 (Jaiswal et al., 2017; Lee et al., 2022; Edussuriya et al., 2023) 와 같은 긍정적 효과가 보 고되고 있다 .”
Usero, F. M., Morillo, J. A., Armas, C., Gallardo, M., Thompson, R., & Pugnaire, F. (2023) · Spanish Journal of Agricultural Research · doi:10.5424/sjar/2023212-19857 · Cited by 1
Biochars for Remediation of Recalcitrant Soils to Enhance Agronomic Performance
Grobelak, A., & Jaskulak, M. (2021) · Handbook of Assisted and Amendment: Enhanced Sustainable Remediation Technology · doi:10.1002/9781119670391.ch9 · Cited by 1
Luo, Z., Wang, A., Quan, W., Li, C., & Wang, B. (2026) · Biochar X · doi:10.48130/bchax-0026-0012 · Cited by 1
Biochar Behaviour and the Influence of Soil Microbial Community
Anyanwu, I. N., Nwajiuba, C. U., Chamba, E. B., Omoni, V. T., & Semple, K. T. (2021) · Plant in challenging environments · doi:10.1007/978-3-030-78420-1_9 · Cited by 2
Das, S. K., Ghosh, G. K., & Avasthe, R. (2020) · Biomass Conversion and Biorefinery · doi:10.1007/s13399-020-00836-5 · Cited by 114
Tarf, O. J., Akça, M. O., Donar, Y. O., Bilge, S., Turgay, O. C., & Sınağ, A. (2021) · Biomass Conversion and Biorefinery · doi:10.1007/s13399-021-01282-7 · Cited by 33
Piccolo, P., Pazienza, G., Gentile, A., Lasorella, C., Guarino, F., & Terzaghi, M. (2026) · Environments · doi:10.3390/environments13110580
Bioaugmentation with Bacillus amyloliquefaciens enhances DON removal in activated sludge systems
Yao, Z., Liu, C., Zhen, Y., Yang, W.-H., Gao, J.-T., Ma, J., Wu, Y.-H., & Li, W.-P. (2026) · Applied Water Science · doi:10.1007/s13201-026-02991-y
“Rhodanobacter cells are strictly aerobic and demonstrate a degradation ability for aromatic compounds (Jaiswal et al. 2017).”
Ismail, A. M., Belwal, N. S., Afzal, S., Khare, S., Alturki, S. M., Mahmoud, H., Hamed, L., & Faizan, M. (2026) · Plant and Soil · doi:10.1007/s11104-026-09042-0
Panday, D., Das, S., Acharya, B. S., Heller, W. P., McKeever, L. C., & Ghalehgolabbehbahani, A. (2026) · Discover Soil. · doi:10.1007/s44378-026-00297-8
“In addition, its pore network provides habitat for soil microorganisms, potentially supporting bacteria, fungi, and arbuscular mycorrhizal fungi (AMF) [11–13].”
Librici, C., Hagemann, N., & Conte, P. (2026) · Journal of soil science and plant nutrition · doi:10.1007/s42729-026-03480-6
Grewal, S., Singh, J., Deol, I. S., & Saha, D. (2026) · Frontiers in Agronomy · doi:10.3389/fagro.2026.1834751
Zhang, S., Jia, J., Guan, H., Ma, Y., Xiao, B., Yuan, H., Wang, Y., Wang, W., & Zhang, B. (2026) · Journal of soil science and plant nutrition · doi:10.1007/s42729-026-03397-0
“…proliferation of beneficial microorganisms synergizes with improved soil physicochemical properties, competitively excluding pathogens through niche occupation and nutri - ent competition (Jaiswal et al. 2017) and further suppress - ing pathogenic microorganisms in several ways (Wang et al. 2022 ).”
Ruanpanun, P., Pongsilp, N., & Nimnoi, P. (2026) · Physiological and molecular plant pathology · doi:10.1016/j.pmpp.2026.103295
Biochar addition improves soil quality of tea plants via shift in bacterial community
Zhao, Y., Mi, M. L., Wang, S., Fang, B., Zhu, H., Jin, Z., Wong, M. H., Shan, S., & Ping, L. (2026) · 3 Biotech · doi:10.1007/s13205-026-04731-0
Jehan, S., Ashraf, R., Khan, M. A., Hussain, R., Basheer, N., Kashani, M. B. S., & Wasay, A. (2026) · Physical Education, Health and Social Sciences · doi:10.63163/jpehss.v4i1.1081
“Tomato soils amended with biochar and compost exhibit significant shifts in microbial biomass, activity, and community composition (Jaiswal et al., 2017).”
RETRACTED ARTICLE: Macrogenomic analysis of the previous crops effects on tobacco soil microbiomes
Liu, X., Chen, Y., Shi, Z.-F., Shi, Z.-L., Pu, T., Zhang, Y., He, F., Li, X.-W., Wang, Y., Jia, J., et al. (2025) · Scientific Reports · doi:10.1038/s41598-025-08640-9
RetractedYang, J., Chen, H., Li, C.-W., Cao, B., Zeng, X., Li, X., Zhang, S., Lu, Y., Liu, L., & Yang, S. (2025) · Biological control (Print) · doi:10.1016/j.biocontrol.2025.105954
Wang, R.-Q., Lyu, F., Lyu, R., He, J., & Wei, L.-G. (2025) · Scientific Reports · doi:10.1038/s41598-025-19129-w
Effects of compost amendments and experimental drought on grassland soil microbial communities
Guasconi, D., Hugelius, G., Clemmensen, K. E., Cousins, S. A. O., Juhanson, J., Manzoni, S., Roth, N., & Fransson, P. M. A. (2025) · FEMS Microbiology Letters · doi:10.1093/femsle/fnaf108 · Cited by 1
“This is in contrast with previous studies showing that OA stimulated bacterial growth (Lucas et al. 2014 , Bastida et al. 2017 ), diversity (Jaiswal et al. 2017 , Bastida et al. 2017 , Han et al. 2023 ), and altered bacterial community composition (Han et al. 2023 ) over short time scales (less…”
da Silva, D. P., da Costa, K. J. S., Schilisting, T., Sá, A. C. S., da Silva, V. M., de Andrade, R. S., Nascimento, B., de Azevedo, I. M. B., Moraes, C., Pereira, M. E. D. O., et al. (2025) · Forests · doi:10.3390/f16091489
M, G., S., P., S., S., S., K. A., & Lakshmanan, A. (2019) · Madras Agricultural Journal · doi:10.29321/maj.2019.000248
“Pseudomonas fluorescens frozen the liquid buffer at -10°C while PPFM not frozen the liquid buffer at -10°C Jaiswal et al. (2017) reported that biochar controls the transpiration rate both the presence and absence of microbes in the tomato plants.”
Background
Metadata
- Authors
- Jaiswal, A. K., Elad, Y., Paudel, I., Graber, E. R., Cytryn, E., & Frenkel, O.
- Affiliations
- Hebrew University of Jerusalem (IL)
- Agricultural Research Organization (IL)
- Corresponding author
- Frenkel, Omer
- Venue
- Scientific Reports
- Published
- 2017-03-13
- Volume
- 7
- Issue
- 1
- Pages
- 44382-44382
- ISSN
- 2045-2322 (ISSN-L)
- PMC
- PMC5347032
- OpenAlex
- W2595184516
- Cited by
- 217
- References
- 83
- Citations by year
- 2026: 16 · 2025: 25 · 2024: 22 · 2023: 32 · 2022: 28 · 2021: 34 · 2020: 28 · 2019: 21 · 2018: 9 · 2017: 2
- FWCI
- 16.16
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Scientific Reports (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Funders
- University of Illinois at Chicago
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant-Microbe Interactions and Immunity
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Disease Management Techniques
- Life Sciences › Agricultural and Biological Sciences › Soil Science › Soil Carbon and Nitrogen Dynamics
- Keywords
- biochar, tomato, Fusarium crown and root rot, rhizosphere microbiome, microbial diversity, plant growth promotion, carbon source utilization, soil amendment
- MeSH terms
- Bacteria, Charcoal, Fertilizers, Fungi, Fusarium, Plant Diseases, RNA, Ribosomal, 16S, Soil, Soil Microbiology, Solanum lycopersicum, Rhizosphere, Microbial Consortia, High-Throughput Nucleotide Sequencing
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