CoChat
Sign Up
Cited by 76Microbial Metabolic Engineering and BioproductionBiofuel production and bioconversionCatalysis for Biomass Conversion

Integrated diesel production from lignocellulosic sugars via oleaginous yeast

Open access
Sànchez i Nogué, Violeta, Black, Brenna A., Kruger, Jacob S., Singer, Christine A., Ramirez, Kelsey J., Reed, Michelle L., Cleveland, Nicholas S., Singer, Emily R. +4 more·2018·Green Chemistry
DOI 10.1039/c8gc01905c
Open this paper in CoChat — free accountOpen PDF

Abstract

Oleaginous microbes are promising platform strains for the production of renewable diesel and fatty-acid derived chemicals given their capacity to produce high lipid yields.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1039/c8gc01905c

Cites

117 of 117 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 112

  1. A. Ragauskas, C. Williams, B. Davison, G. Britovsek, J. Cairney, C. Eckert, W. Frederick, J. Hallett, D. Leak, C. Liotta, J. Mielenz, R. Murphy, R. Templer and T. Tschaplinski, Science, 2006, 311, 484-489.
  2. L. R. Lynd, M. S. Laser, D. Bransby, B. E. Dale, B. Davison, R. Hamilton, M. Himmel, M. Keller, J. D. McMillan and J. Sheehan, Nat. Biotechnol., 2008, 26, 169-172.
  3. G. Stephanopoulos, Science, 2007, 315, 801-804.
  4. J. N. Chheda, G. W. Huber and J. A. Dumesic, Angew. Chem., Int. Ed., 2007, 46, 7164-7183.
  5. S. K. Lee, H. Chou, T. S. Ham, T. S. Lee and J. D. Keasling, Curr. Opin. Biotechnol., 2008, 19, 556-563.
  6. H. Alper and G. Stephanopoulos, Nat. Rev. Microbiol., 2009, 7, 715-723.
  7. M. R. Connor and J. C. Liao, Curr. Opin. Biotechnol., 2009, 20, 307-315.
  8. J. C. Serrano-Ruiz and J. A. Dumesic, Energy Environ. Sci., 2011, 4, 83-99.
  9. S. Van de Vyver, J. Geboers, P. A. Jacobs and B. F. Sels, ChemCatChem, 2011, 3, 82-94.
  10. P. P. Peralta-Yahya, F. Zhang, S. B. del Cardayre and J. D. Keasling, Nature, 2012, 488, 320-328.
  11. J. C. Serrano-Ruiz, R. M. West and J. A. Dumesic, Annu. Rev. Chem. Biomol. Eng., 2010, 1, 79-100.
  12. P. Mäki-Arvela, I. Kubickova, M. Snåre, K. Eränen and D. Y. Murzin, Energy Fuels, 2007, 21, 30-41.
  13. M. K. Akhtar, N. J. Turner and P. R. Jones, Proc. Natl. Acad. Sci. U. S. A., 2013, 110, 87-92.
  14. M. Snåre, I. Kubičková, P. Mäki-Arvela, K. Eränen and D. Y. Murzin, Ind. Eng. Chem. Res., 2006, 45, 5708-5715.
  15. E. J. Steen, Y. Kang, G. Bokinsky, Z. Hu, A. Schirmer, A. McClure, S. B. del Cardayre and J. D. Keasling, Nature, 2010, 463, 559.
  16. V. Sànchez Nogué and K. Karhumaa, Biotechnol. Lett., 2015, 37, 761-772.
  17. M. Tai and G. Stephanopoulos, Metab. Eng., 2013, 15, 1-9.
  18. Y. A. Tsigie, C.-Y. Wang, C.-T. Truong and Y.-H. Ju, Bioresour. Technol., 2011, 102, 9216-9222.
  19. K. Qiao, S. H. Imam Abidi, H. Liu, H. Zhang, S. Chakraborty, N. Watson, P. Kumaran Ajikumar and G. Stephanopoulos, Metab. Eng., 2015, 29, 56-65.
  20. M. Thiru, S. Sankh and V. Rangaswamy, Bioresour. Technol., 2011, 102, 10436-10440.
  21. J. Zhang, X. Fang, X.-L. Zhu, Y. Li, H.-P. Xu, B.-F. Zhao, L. Chen and X.-D. Zhang, Biomass Bioenergy, 2011, 35, 1906-1911.
  22. Y. Li, Z. K. Zhao and F. Bai, Enzyme Microb. Technol., 2007, 41, 312-317.
  23. Z. Zhu, S. Zhang, H. Liu, H. Shen, X. Lin, F. Yang, Y. J. Zhou, G. Jin, M. Ye, H. Zou and Z. K. Zhao, Nat. Commun., 2012, 3, 1112. Q5 This journal is © The Royal Society of Chemistry 2018 Green Chem., 2018, 00, 1-17 | 15
  24. C. Hu, X. Zhao, J. Zhao, S. Wu and Z. K. Zhao, Bioresour. Technol., 2009, 100, 4843-4847.
  25. S. Wu, X. Zhao, H. Shen, Q. Wang and Z. K. Zhao, Bioresour. Technol., 2011, 102, 1803-1807.
  26. J. Yaegashi, J. Kirby, M. Ito, J. Sun, T. Dutta, M. Mirsiaghi, E. R. Sundstrom, A. Rodriguez, E. Baidoo, D. Tanjore, T. Pray, K. Sale, S. Singh, J. D. Keasling, B. A. Simmons, S. W. Singer, J. K. Magnuson, A. P. Arkin, J. M. Skerker and J. M. Gladden, Biotechnol. Biofuels, 2017, 10, 241.
  27. C. Saenge, B. Cheirsilp, T. T. Suksaroge and T. Bourtoom, Process Biochem., 2011, 46, 210-218.
  28. E. R. Easterling, W. T. French, R. Hernandez and M. Licha, Bioresour. Technol., 2009, 100, 356-361.
  29. G. Zhang, W. T. French, R. Hernandez, E. Alley and M. Paraschivescu, Biomass Bioenergy, 2011, 35, 734-740.
  30. Z. Gong, Q. Wang, H. Shen, C. Hu, G. Jin and Z. K. Zhao, Bioresour. Technol., 2012, 117, 20-24.
  31. C. Huang, X.-F. Chen, X.-Y. Yang, L. Xiong, X.-Q. Lin, J. Yang, B. Wang and X.-D. Chen, Appl. Biochem. Biotechnol., 2014, 172, 2197-2204.
  32. X. Zhao, X. Kong, Y. Hua, B. Feng and Z. K. Zhao, Eur. J. Lipid Sci. Technol., 2008, 110, 405-412.
  33. P. Xu, K. Qiao, W. S. Ahn and G. Stephanopoulos, Proc. Natl. Acad. Sci. U. S. A., 2016, 113, 10848-10853.
  34. K. Qiao, T. M. Wasylenko, K. Zhou, P. Xu and G. Stephanopoulos, Nat. Biotechnol., 2017, 35, 173.
  35. S. Zhang, M. Ito, J. M. Skerker, A. P. Arkin and C. V. Rao, Appl. Microbiol. Biotechnol., 2016, 100, 9393-9405.
  36. M. S. Davis, J. Solbiati and J. E. Cronan, J. Biol. Chem., 2000, 275, 28593-28598.
  37. X. Lu, H. Vora and C. Khosla, Metab. Eng., 2008, 10, 333- 339.
  38. T. Liu, H. Vora and C. Khosla, Metab. Eng., 2010, 12, 378- 386.
  39. J. Clomburg and R. Gonzalez, Appl. Microbiol. Biotechnol., 2010, 86, 419-434.
  40. R. M. Lennen, D. J. Braden, R. M. West, J. A. Dumesic and B. F. Pfleger, Biotechnol. Bioeng., 2010, 106, 193-202.
  41. P. Handke, S. A. Lynch and R. T. Gill, Metab. Eng., 2011, 13, 28-37.
  42. W. Runguphan and J. D. Keasling, Metab. Eng., 2014, 21, 103-113.
  43. N. A. Buijs, V. Siewers and J. Nielsen, Curr. Opin. Chem. Biol., 2013, 17, 480-488.
  44. X. Tang, H. Feng and W. N. Chen, Metab. Eng., 2013, 16, 95-102.
  45. J. O. Valle-Rodríguez, S. Shi, V. Siewers and J. Nielsen, Appl. Energy, 2014, 115, 226-232.
  46. I. R. Sitepu, L. A. Garay, R. Sestric, D. Levin, D. E. Block, J. B. German and K. L. Boundy-Mills, Biotechnol. Adv., 2014, 32, 1336-1360.
  47. J. M. Ageitos, J. A. Vallejo, P. Veiga-Crespo and T. G. Villa, Appl. Microbiol. Biotechnol., 2011, 90, 1219-1227.
  48. M. J. Biddy, R. Davis, D. Humbird, L. Tao, N. Dowe, M. T. Guarnieri, J. G. Linger, E. M. Karp, D. Salvachúa, D. R. Vardon and G. T. Beckham, ACS Sustainable Chem. Eng., 2016, 4, 3196-3211.
  49. P. J. Slininger, B. S. Dien, C. P. Kurtzman, B. R. Moser, E. L. Bakota, S. R. Thompson, P. J. O'Bryan, M. A. Cotta, V. Balan, M. Jin, L. d. C. Sousa and B. E. Dale, Biotechnol. Bioeng., 2016, 113, 1676-1690.
  50. B. S. Dien, P. J. Slininger, C. P. Kurtzman, B. R. Moser and P. J. O'Bryan, AIMS Environ. Sci., 2016, 3, 1-20.
  51. J. P. Sampaio, in The Yeasts, ed. J. W. Fell and T. Boekhout, Elsevier, London, 5th edn, 2011, pp. 1873-1927.
  52. J.-E. Lee, P. V. Vadlani and D. Min, J. Sustainable Bioenergy Syst., 2017, 7, 36-50.
  53. X. Yu, Y. Zheng, K. M. Dorgan and S. Chen, Bioresour. Technol., 2011, 102, 6134-6140.
  54. Y.-H. Chang, K.-S. Chang, C.-L. Hsu, L.-T. Chuang, C.-Y. Chen, F.-Y. Huang and H.-D. Jang, Fuel, 2013, 105, 711-717.
  55. Y.-H. Chang, K.-S. Chang, C.-F. Lee, C.-L. Hsu, C.-W. Huang and H.-D. Jang, Biomass Bioenergy, 2015, 72, 95-103.
  56. Q. Fei, M. O'Brien, R. Nelson, X. Chen, A. Lowell and N. Dowe, Biotechnol. Biofuels, 2016, 9, 130.
  57. X. Zhao, S. Wu, C. Hu, Q. Wang, Y. Hua and Z. K. Zhao, J. Ind. Microbiol. Biotechnol., 2010, 37, 581-585.
  58. J. Brandenburg, J. Blomqvist, J. Pickova, N. Bonturi, M. Sandgren and V. Passoth, Yeast, 2016, 33, 451-462.
  59. J. Wang, Q. Gao, H. Zhang and J. Bao, Bioresour. Technol., 2016, 218, 892-901.
  60. X. Tang, H. Chen, Y. Q. Chen, W. Chen, V. Garre, Y. Song and C. Ratledge, PLoS One, 2015, 10, e0128396.
  61. D. Hardman, D. McFalls and S. Fakas, Yeast, 2017, 34, 83-91.
  62. S. Fakas, Eng. Life Sci., 2017, 17, 292-302.
  63. J. R. Petrie, T. Vanhercke, P. Shrestha, A. El Tahchy, A. White, X.-R. Zhou, Q. Liu, M. P. Mansour, P. D. Nichols and S. P. Singh, PLoS One, 2012, 7, e35214.
  64. G. M. Carman, Biochem. Soc. Trans., 2005, 33, 1150-1153.
  65. R. Plaggenborg, J. Overhage, A. Loos, J. A. C. Archer, P. Lessard, A. J. Sinskey, A. Steinbüchel and H. Priefert, Appl. Microbiol. Biotechnol., 2006, 72, 745.
  66. S. Mathew and T. E. Abraham, Crit. Rev. Microbiol., 2006, 32, 115-125.
  67. P. Wang, J. E. Brenchley and A. E. Humphrey, Biotechnol. Lett., 1994, 16, 977-982.
  68. F. Koopman, N. Wierckx, J. H. de Winde and H. J. Ruijssenaars, Proc. Natl. Acad. Sci. U. S. A., 2010, 107, 4919-4924. 16 | Green Chem., 2018, 00, 1-17 This journal is © The Royal Society of Chemistry 2018 Pursuant to the DOE Public Access Plan, this document represents the authors' peer-reviewed, accepted manuscript. The published version of the article is available from the relevant publisher.
  69. H. Ran, J. Zhang, Q. Gao, Z. Lin and J. Bao, Biotechnol. Biofuels, 2014, 7, 51.
  70. D. Feldman, D. J. Kowbel, N. L. Glass, O. Yarden and Y. Hadar, Biotechnol. Biofuels, 2015, 8, 63.
  71. C. Huang, H. Wu, T. J. Smith, Z. j. Liu, W. Y. Lou and M. h. Zong, Biotechnol. Lett., 2012, 34, 1637-1642.
  72. I. Sárvári Horváth, C. J. Franzén, M. J. Taherzadeh, C. Niklasson and G. Lidén, Appl. Environ. Microbiol., 2003, 69, 4076-4086.
  73. N. Wierckx, F. Koopman, L. Bandounas, J. H. De Winde and H. J. Ruijssenaars, Microb. Biotechnol., 2010, 3, 336-343.
  74. M. T. Guarnieri, M. Ann Franden, C. W. Johnson and G. T. Beckham, Metabol. Eng. Commun., 2017, 4, 22-28.
  75. G. T. Beckham, C. W. Johnson, E. M. Karp, D. Salvachúa and D. R. Vardon, Curr. Opin. Biotechnol., 2016, 42, 40-53.
  76. D. Salvachúa, E. M. Karp, C. T. Nimlos, D. R. Vardon and G. T. Beckham, Green Chem., 2015, 17, 4951-4967.
  77. A. Yaguchi, A. Robinson, E. Mihealsick and M. Blenner, Microb. Cell Fact., 2017, 16, 206.
  78. J. P. Sampaio, Can. J. Microbiol., 1999, 45, 491-512.
  79. S. A. Shields-Menard, M. AmirSadeghi, M. Green, E. Womack, D. L. Sparks, J. Blake, M. Edelmann, X. Ding, B. Sukhbaatar, R. Hernandez, J. R. Donaldson and T. French, Int. Biodeterior. Biodegrad., 2017, 121, 79-90.
  80. D. R. Durham, C. G. McNamee and D. B. Stewart, J. Bacteriol., 1984, 160, 771-777.
  81. A. Gaal and H. Y. Neujahr, J. Bacteriol., 1979, 137, 13-21.
  82. S. Amara, N. Seghezzi, H. Otani, C. Diaz-Salazar, J. Liu and L. D. Eltis, Sci. Rep., 2016, 6, 24985.
  83. A. Rodriguez, D. Salvachúa, R. Katahira, B. A. Black, N. S. Cleveland, M. Reed, H. Smith, E. E. K. Baidoo, J. D. Keasling, B. A. Simmons, G. T. Beckham and J. M. Gladden, ACS Sustainable Chem. Eng., 2017, 5, 8171- 8180.
  84. R. K. Le, T. Wells Jr., P. Das, X. Meng, R. J. Stoklosa, A. Bhalla, D. B. Hodge, J. S. Yuan and A. J. Ragauskas, RSC Adv., 2017, 7, 4108-4115.
  85. Y. He, X. Li, H. Ben, X. Xue and B. Yang, ACS Sustainable Chem. Eng., 2017, 5, 2302-2311.
  86. L. M. L. Laurens, M. Quinn, S. Van Wychen, D. W. Templeton and E. J. Wolfrum, Anal. Bioanal. Chem., 2012, 403, 167-178.
  87. M. K. Conway, D. Grunwald and W. Heideman, G3: Genes, Genomes, Genet., 2012, 2, 1003-1017.
  88. E. Van Donk, M. Lürling, D. O. Hessen and G. M. Lokhorst, Limnol. Oceanogr., 1997, 42, 357-364.
  89. T. Dong, S. Van Wychen, N. Nagle, P. T. Pienkos and L. M. L. Laurens, Algal Res., 2016, 18, 69-77.
  90. H. G. Gerken, B. Donohoe and E. P. Knoshaug, Planta, 2013, 237, 239-253.
  91. M. Werner-Washburne, E. Braun, G. C. Johnston and R. A. Singer, Microbiol. Rev., 1993, 57, 383-401.
  92. J. S. Kruger, E. D. Christensen, T. Dong, S. Van Wychen, G. M. Fioroni, P. T. Pienkos and R. L. McCormick, Energy Fuels, 2017, 31, 10946-10953.
  93. M. Omidghane, E. Jenab, M. Chae and D. C. Bressler, Energy Fuels, 2017, 31, 9446-9454.
  94. R. O. Idem, S. P. R. Katikaneni and N. N. Bakhshi, Energy Fuels, 1996, 10, 1150-1162.
  95. H. J. Robota, J. C. Alger and L. Shafer, Energy Fuels, 2013, 27, 985-996. 100
  96. J. Asomaning, P. Mussone and D. C. Bressler, J. Anal. Appl. Pyrolysis, 2014, 105, 1-7. 101
  97. D. McMillan James and T. Beckham Gregg, Microb. Biotechnol., 2016, 10, 40-42. 102
  98. F. Delvigne and H. Noorman, Microb. Biotechnol., 2017, 10, 685-687. 103
  99. D. Lamers, N. van Biezen, D. Martens, L. Peters, E. van de Zilver, N. Jacobs-van Dreumel, R. H. Wijffels and C. Lokman, BMC Biotechnol., 2016, 16, 45. 104
  100. R. Poontawee, W. Yongmanitchai and S. Limtong, Process Biochem., 2017, 53, 44-60. 105
  101. S. Fillet, J. Gibert, B. Suarez, A. Lara, C. Ronchel and J. L. Adrio, J. Ind. Microbiol. Biotechnol., 2015, 42, 1463-1472. 106
  102. S. Shi and H. Zhao, Front. Microbiol., 2017, 8, 2185.
  103. V. Martínez, P. García, J. L. García and M. A. Prieto, Microb. Biotechnol., 2011, 4, 533-547. 109
  104. O. Pastinen, A. Nyyssölä, V. Pihlajaniemi and M. H. Sipponen, Process Biochem., 2017, 58, 217-223. 110
  105. B. E. Della-Bianca, T. O. Basso, B. U. Stambuk, L. C. Basso and A. K. Gombert, Appl. Microbiol. Biotechnol., 2013, 97, 979-991.
  106. A. K. Gombert and A. J. A. van Maris, Curr. Opin. Biotechnol., 2015, 33, 81-86. 112
  107. V. F. Tret'yakov, Y. I. Makarfi, K. V. Tret'yakov, N. A. Frantsuzova and R. M. Talyshinskii, Catal. Ind., 2010, 2, 402-420. 113
  108. N. Viswanadham, S. K. Saxena, J. Kumar, P. Sreenivasulu and D. Nandan, Fuel, 2012, 95, 298-304. 114
  109. J. J. Lovón-Quintana, J. K. Rodriguez-Guerrero and P. G. Valença, Appl. Catal., A, 2017, 542, 136-145. 115
  110. O. Muraza, Ind. Eng. Chem. Res., 2015, 54, 781-789. 116 US Pat, 20070287873A1, 2006 . 117 WO Pat, 2016160839A1, 2015. 118
  111. E. Masai, Y. Katayama and M. Fukuda, Biosci., Biotechnol., Q7 Biochem., 2007, 71, 1-15. 119
  112. N. Kamimura, K. Katakahashi, K. Mori, T. Araki, M. Fujita, Y. Higuchi and E. Masa, Environ. Microbiol. Rep., 2017, 9, 679-705.

Cited by

Sorted by citations

Related

Authors
Sànchez i Nogué, V., Black, B. A., Kruger, J. S., Singer, C. A., Ramirez, K. J., Reed, M. L., Cleveland, N. S., Singer, E. R., Yi, X., Yeap, R. Y., Linger, J. G., & Beckham, G. T.
Affiliations
  • National Bioenergy Center
  • National Laboratory of the Rockies (US)
Corresponding author
Beckham, Gregg T.
ORCID
Venue
Green Chemistry
Publisher
Royal Society of Chemistry (RSC)
Published
2018
Volume
20
Issue
18
Pages
4349-4365
ISSN
  • 1463-9262 (ISSN-L)
  • 1463-9270
DOI
10.1039/c8gc01905c
OpenAlex
W2888531519
Cited by
76
References
117
Citations by year
2026: 7 · 2025: 4 · 2024: 20 · 2023: 10 · 2022: 8 · 2021: 12 · 2020: 9 · 2019: 5 · 2018: 1
FWCI
2.41
Type
journal article
Language
en
Open access
Licence
rsc.li/journals-terms-of-use#chorus (am, 596 d)
Locations
  • Green Chemistry (publishedVersion)
  • OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (submittedVersion)
Funders
Bioenergy Technologies Office (DE-AC36-08GO28308)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial Metabolic Engineering and Bioproduction
  • Physical Sciences › Engineering › Biomedical Engineering › Biofuel production and bioconversion
  • Physical Sciences › Engineering › Biomedical Engineering › Catalysis for Biomass Conversion
Keywords
oleaginous yeast, lignocellulosic sugars, renewable diesel, fatty acid production, lipid accumulation, microbial lipid production, biofuel production

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review