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PKC isoforms activate LRRK1 kinase by phosphorylating conserved residues (Ser1064, Ser1074 and Thr1075) within the CORB GTPase domain
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Abstract
Leucine-rich-repeat-kinase 1 (LRRK1) and its homolog LRRK2 are multidomain kinases possessing a ROC-CORA-CORB containing GTPase domain and phosphorylate distinct Rab proteins. LRRK1 loss of function mutations cause the bone disorder osteosclerotic metaphyseal dysplasia, whereas LRRK2 missense mutations that enhance kinase activity cause Parkinson's disease. Previous work suggested that LRRK1 but not LRRK2, is activated via a Protein Kinase C (PKC)-dependent mechanism. Here we demonstrate that phosphorylation and activation of LRRK1 in HEK293 cells is blocked by PKC inhibitors including LXS-196 (Darovasertib), a compound that has entered clinical trials. We show multiple PKC isoforms phosphorylate and activate recombinant LRRK1 in a manner reversed by phosphatase treatment. PKCα unexpectedly does not activate LRRK1 by phosphorylating the kinase domain, but instead phosphorylates a cluster of conserved residues (Ser1064, Ser1074 and Thr1075) located within a region of the CORB domain of the GTPase domain. These residues are positioned at the equivalent region of the LRRK2 DK helix reported to stabilize the kinase domain αC-helix in the active conformation. Thr1075 represents an optimal PKC site phosphorylation motif and its mutation to Ala, blocked PKC-mediated activation of LRRK1. A triple Glu mutation of Ser1064/Ser1074/Thr1075 to mimic phosphorylation, enhanced LRRK1 kinase activity ∼3-fold. From analysis of available structures, we postulate that phosphorylation of Ser1064, Ser1074 and Thr1075 activates LRRK1 by promoting interaction and stabilization of the αC-helix on the kinase domain. This study provides new fundamental insights into the mechanism controlling LRRK1 activity and reveals a novel unexpected activation mechanism.
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Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
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Research works printed but not linked: 56
- 2017, Cryo-EM analysis of homodimeric full-length LRRK2 and LRRK1 protein complexes, Sci. Rep., 7, 8667, 10.1038/s41598-017-09126-z · DOI
- 2022, Structural basis for Parkinson's disease-linked LRRK2's binding to microtubules, bioRxiv, 10.1101/2022.01.21.477284 · DOI
- 2017, Role and mechanism of action of leucine-rich repeat kinase 1 in bone, Bone Res., 5, 17003, 10.1038/boneres.2017.3 · DOI
- 2017, Identification of a novel LRRK1 mutation in a family with osteosclerotic metaphyseal dysplasia, J. Hum. Genet., 62, 437, 10.1038/jhg.2016.136 · DOI
- 2011, A mutation in VPS35, encoding a subunit of the retromer complex, causes late-onset Parkinson disease, Am. J. Hum. Genet., 89, 168, 10.1016/j.ajhg.2011.06.008 · DOI · Paper page
- 2004, Cloning of the gene containing mutations that cause PARK8-linked Parkinson's disease, Neuron, 44, 595, 10.1016/j.neuron.2004.10.023 · DOI
- 2019, LRRK1 phosphorylation of Rab7 at S72 links trafficking of EGFR-containing endosomes to its effector RILP, J. Cell Sci., 132, jcs228809, 10.1242/jcs.228809 · DOI
- 2021, Deciphering the LRRK code: LRRK1 and LRRK2 phosphorylate distinct Rab proteins and are regulated by diverse mechanisms, Biochem. J., 478, 553, 10.1042/BCJ20200937 · DOI
- 2016, Phosphoproteomics reveals that Parkinson's disease kinase LRRK2 regulates a subset of Rab GTPases, eLife, 5, e12813, 10.7554/eLife.12813 · DOI · Paper page
- 2017, Systematic proteomic analysis of LRRK2-mediated Rab GTPase phosphorylation establishes a connection to ciliogenesis, eLife, 6, e31012, 10.7554/eLife.31012 · DOI · Paper page
- 2020, Structural basis for Rab8a recruitment of RILPL2 via LRRK2 phosphorylation of switch 2, Structure, 28, 406, 10.1016/j.str.2020.01.005 · DOI · Paper page
- 2020, LRRK2 mediates tubulation and vesicle sorting from lysosomes, Sci. Adv., 6, eabb2454, 10.1126/sciadv.abb2454 · DOI
- 2021, LRRK2-phosphorylated rab10 sequesters myosin Va with RILPL2 during ciliogenesis blockade, Life Sci. Alliance, 4, e202101050, 10.26508/lsa.202101050 · DOI
- 2018, Rab29 activation of the Parkinson's disease-associated LRRK2 kinase, EMBO J., 37, 1, 10.15252/embj.201798099 · DOI · Paper page
- 2018, LRRK2 phosphorylates membrane-bound Rabs and is activated by GTP-bound Rab7L1 to promote recruitment to the trans-Golgi network, Hum. Mol. Genet., 27, 385, 10.1093/hmg/ddx410 · DOI · Paper page
- 2019, Membrane association but not identity is required for LRRK2 activation and phosphorylation of Rab GTPases, J. Cell Biol., 218, 4157, 10.1083/jcb.201902184 · DOI · Paper page
- 2022, A feed-forward pathway drives LRRK2 kinase membrane recruitment and apparent activation, bioRxiv, 10.1101/2022.04.25.489459 · DOI · Paper page
- 2022, Structural basis of human LRRK2 membrane recruitment and activation, bioRxiv, 10.1101/2022.04.26.489605 · DOI · Paper page
- 2018, The Parkinson's disease VPS35[D620N] mutation enhances LRRK2-mediated Rab protein phosphorylation in mouse and human, Biochem. J., 475, 1861, 10.1042/BCJ20180248 · DOI · Paper page
- 1998, The extended protein kinase C superfamily, Biochem. J., 332, 281, 10.1042/bj3320281 · DOI
- 1999, Carboxyl-terminal phosphorylation regulates the function and subcellular localization of protein kinase C betaII, J. Biol. Chem., 274, 6461, 10.1074/jbc.274.10.6461 · DOI
- 1998, Protein kinase C isotypes controlled by phosphoinositide 3-kinase through the protein kinase PDK1, Science, 281, 2042, 10.1126/science.281.5385.2042 · DOI
- 1998, Regulation of conventional protein kinase C isozymes by phosphoinositide-dependent kinase 1 (PDK-1), Curr. Biol., 8, 1366, 10.1016/S0960-9822(98)00017-7 · DOI
- 2021, mTORC2 controls the activity of PKC and Akt by phosphorylating a conserved TOR interaction motif, Sci. Signal., 14, eabe4509, 10.1126/scisignal.abe4509 · DOI
- 1998, The sevenfold way of PKC regulation, Cell Signal., 10, 529, 10.1016/S0898-6568(98)00012-6 · DOI
- 1998, Regulation of protein kinase C zeta by PI 3-kinase and PDK-1, Curr. Biol., 8, 1069, 10.1016/S0960-9822(98)70444-0 · DOI
- 2000, Further evidence that 3-phosphoinositide-dependent protein kinase-1 (PDK1) is required for the stability and phosphorylation of protein kinase C (PKC) isoforms, FEBS Lett., 484, 217, 10.1016/S0014-5793(00)02162-1 · DOI
- 2000, The atypical protein kinase Cs. functional specificity mediated by specific protein adapters, EMBO Rep., 1, 399, 10.1093/embo-reports/kvd098 · DOI
- 1997, Determination of the specific substrate sequence motifs of protein kinase C isozymes, J. Biol. Chem., 272, 952, 10.1074/jbc.272.2.952 · DOI
- 2012, Protein kinase C (PKC) isozyme-specific substrates and their design, Biotechnol. Adv., 30, 1662, 10.1016/j.biotechadv.2012.07.004 · DOI
- 1996, Protein kinase D (PKD) activation in intact cells through a protein kinase C-dependent signal transduction pathway, EMBO J., 15, 6220, 10.1002/j.1460-2075.1996.tb01012.x · DOI
- 1996, Inhibition of protein kinase C mu by various inhibitors. differentiation from protein kinase c isoenzymes, FEBS Lett., 392, 77, 10.1016/0014-5793(96)00785-5 · DOI · Paper page
- 2002, Phosphoprotein analysis using antibodies broadly reactive against phosphorylated motifs, J. Biol. Chem., 277, 39379, 10.1074/jbc.M206399200 · DOI
- 1998, Activation of the mitogen-activated protein kinase/extracellular signal-regulated kinase pathway by conventional, novel, and atypical protein kinase C isotypes, Mol. Cell. Biol., 18, 790, 10.1128/MCB.18.2.790 · DOI
- 1986, Bryostatin, an activator of the calcium phospholipid-dependent protein kinase, blocks phorbol ester-induced differentiation of human promyelocytic leukemia cells HL-60, Proc. Natl Acad. Sci. U.S.A., 83, 1334, 10.1073/pnas.83.5.1334 · DOI
- 1996, Protein prenylation: molecular mechanisms and functional consequences, Annu. Rev. Biochem., 65, 241, 10.1146/annurev.bi.65.070196.001325 · DOI
- Arang, N. , C.,M., Rigiracciolo,D.R., Lubrano,S., Saddawi-Konefka,R., Wang,Z.et al. (2022) High throughput chemogenetic drug screening reveals kinase-driven therapeutic vulnerabilities in GNAQ-mutant uveal melanoma. In Preparation · DOI
- 1997, The protein kinase C inhibitors Ro 318220 and GF 109203X are equally potent inhibitors of MAPKAP kinase-1beta (Rsk-2) and p70 S6 kinase, FEBS Lett., 402, 121, 10.1016/S0014-5793(96)01510-4 · DOI
- 2004, A rapid method for determining protein kinase phosphorylation specificity, Nat. Methods, 1, 27, 10.1038/nmeth708 · DOI
- 2010, Characterization of the biological effects of a novel protein kinase D inhibitor in endothelial cells, Biochem. J., 429, 565, 10.1042/BJ20100578 · DOI
- 1989, Discovery of a protein phosphatase activity encoded in the genome of bacteriophage lambda. probable identity with open reading frame 221, Biochem. J., 260, 931, 10.1042/bj2600931 · DOI
- 2014, Differential protein-protein interactions of LRRK1 and LRRK2 indicate roles in distinct cellular signaling pathways, J Neurochem., 131, 239, 10.1111/jnc.12798 · DOI
- 2011, Protein kinases: evolution of dynamic regulatory proteins, Trends Biochem. Sci., 36, 65, 10.1016/j.tibs.2010.09.006 · DOI
- 2022, LRRK2 dynamics analysis identifies allosteric control of the crosstalk between its catalytic domains, PLoS Biol., 20, e3001427, 10.1371/journal.pbio.3001427 · DOI
- 2018, Development of phospho-specific Rab protein antibodies to monitor in vivo activity of the LRRK2 Parkinson's disease kinase, Biochem. J., 475, 1, 10.1042/BCJ20170802 · DOI · Paper page
- 2006, Transfection of mammalian cells using linear polyethylenimine is a simple and effective means of producing recombinant adeno-associated virus vectors, J. Virol. Methods, 138, 85, 10.1016/j.jviromet.2006.07.024 · DOI
- 2004, Cargo-selective endosomal sorting for retrieval to the Golgi requires retromer, J. Cell Biol., 165, 111, 10.1083/jcb.200312034 · DOI · Paper page
- 2021, Development of a multiplexed targeted mass spectrometry assay for LRRK2-phosphorylated rabs and Ser910/Ser935 biomarker sites, Biochem. J., 478, 299, 10.1042/BCJ20200930 · DOI
- 2008, Maxquant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification, Nat. Biotechnol., 26, 1367, 10.1038/nbt.1511 · DOI · Paper page
- 2022, The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences, Nucleic Acids Res., 50, D543, 10.1093/nar/gkab1038 · DOI · Paper page
- 2016, Consurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules, Nucleic Acids Res., 44, W344, 10.1093/nar/gkw408 · DOI · Paper page
- 2019, OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs, Nucleic Acids Res., 47, D807, 10.1093/nar/gky1053 · DOI · Paper page
- 2013, MAFFT multiple sequence alignment software version 7: improvements in performance and usability, Mol. Biol. Evol., 30, 772, 10.1093/molbev/mst010 · DOI · Paper page
- 2020, LRRK2 activation controls the repair of damaged endomembranes in macrophages, EMBO J., 39, e104494, 10.15252/embj.2020104494 · DOI
- 2020, Roles of lysosomotropic agents on LRRK2 activation and Rab10 phosphorylation, Neurobiol. Dis., 145, 105081, 10.1016/j.nbd.2020.105081 · DOI · Paper page
- 2020, Endogenous Rab29 does not impact basal or stimulated LRRK2 pathway activity, Biochem. J., 477, 4397, 10.1042/BCJ20200458 · DOI
Metadata
- Authors
- Malik, A. U., Karapetsas, A., Nirujogi, R. S., Chatterjee, D., Phung, T. K., Wightman, M., Gourlay, R., Morrice, N., Mathea, S., Knapp, S., & Alessi, D. R.
- Affiliations
- University of Dundee (GB)
- Goethe University Frankfurt (DE)
- 4AB Sciex, Alderley Park, Macclesfield SK10 4TG, U.K.
- Corresponding author
- Alessi, Dario R.
- ORCID
- Venue
- Biochemical Journal
- Publisher
- Portland Press Ltd.
- Published
- 2022-09-23
- Volume
- 479
- Issue
- 18
- Pages
- 1941-1965
- ISSN
- 0264-6021 (ISSN-L)
- 1470-8728
- PMC
- PMC9555798
- OpenAlex
- W4293567400
- Cited by
- 13
- References
- 1
- Citations by year
- 2026: 3 · 2025: 5 · 2024: 1 · 2023: 3 · 2022: 1
- FWCI
- 0.82
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Biochemical Journal (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Discovery Research Portal (University of Dundee) (submittedVersion, cc-by)
- Funders
- Michael J. Fox Foundation for Parkinson's Research (ASAP‐000463)
- GlaxoSmithKline
- Merck KGaA
- University of California, San Diego
- Medical Research Council (MC_UU_00018/1)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Health Sciences › Medicine › Clinical Neurology › Parkinson's Disease Mechanisms and Treatments
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Tyrosine Phosphatases
- Keywords
- LRRK1, LRRK2, protein kinase C, kinase activation, GTPase domain, phosphorylation, αC-helix, Parkinson's disease
- MeSH terms
- Leucine-Rich Repeat Serine-Threonine Protein Kinase-2, Humans, Leucine, Mutation, Phosphoric Monoester Hydrolases, Phosphorylation, Protein Kinase C, Protein Serine-Threonine Kinases, Protein Isoforms, GTP Phosphohydrolases, Cordyceps, Protein Kinase Inhibitors, Protein Kinase C-alpha, HEK293 Cells
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