PreprintCited by 63Parkinson's Disease Mechanisms and TreatmentsCellular transport and secretionProtein Kinase Regulation and GTPase Signaling

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

A Feed-forward Pathway Drives LRRK2 kinase Membrane Recruitment and Activation

Open access

Preprint — published as 10.7554/elife.79771 · Paper page

Abstract

Activating mutations in the Leucine Rich Repeat Kinase 2 (LRRK2) cause Parkinson’s disease and previously we showed that activated LRRK2 phosphorylates a subset of Rab GTPases (Steger et al., 2017). Moreover, Golgi-associated Rab29 can recruit LRRK2 to the surface of the Golgi and activate it there for both auto- and Rab substrate phosphorylation. Here we define the precise Rab29 binding region of the LRRK2 Armadillo domain between residues 360-450 and show that this domain, termed “Site #1”, can also bind additional LRRK2 substrates, Rab8A and Rab10. Moreover, we identify a distinct, N-terminal, higher affinity interaction interface between LRRK2 phosphorylated Rab8 and Rab10 termed “Site #2”, that can retain LRRK2 on membranes in cells to catalyze multiple, subsequent phosphorylation events. Kinase inhibitor washout experiments demonstrate that rapid recovery of kinase activity in cells depends on the ability of LRRK2 to associate with phosphorylated Rab proteins, and phosphorylated Rab8A stimulates LRRK2 phosphorylation of Rab10 in vitro. Reconstitution of purified LRRK2 recruitment onto planar lipid bilayers decorated with Rab10 protein demonstrates cooperative association of only active LRRK2 with phospho-Rab10-containing membrane surfaces. These experiments reveal a feed-forward pathway that provides spatial control and membrane activation of LRRK2 kinase activity.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1101/2022.04.25.489459

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 53

  1. Adhikari, A , Vides, E. and Pfeffer, S.R . 2022. Reconstitution of LRRK2 membrane recruitment onto planar lipid bilayers. dx.doi.org/10.17504/protocols.io.x54v9y7qzg3e/v1 · DOI
  2. 10.1126/science.aar5683 · DOI · Paper page
  3. 10.1093/nar/gkw408 · DOI · Paper page
  4. 10.1083/jcb.200109030 · DOI
  5. 10.1021/bi100157u · DOI
  6. 10.7554/eLife.50416 · DOI · Paper page
  7. 10.1002/ana.21019 · DOI
  8. 2021, Increased LRRK2 kinase activity alters neuronal autophagy by disrupting the axonal transport of autophagosomes, Curr Biol, 31, 2140, 10.1016/j.cub.2021.02.061 · DOI
  9. 10.1371/journal.pone.0043472 · DOI
  10. 10.1038/ncb744 · DOI
  11. 10.1038/s41586-020-2673-2 · DOI
  12. 10.7554/eLife.40202 · DOI · Paper page
  13. 10.26508/lsa.202101050 · DOI
  14. 10.1083/jcb.201902184 · DOI · Paper page
  15. Gomez RC , Vides EG , Suzanne Pfeffer 2020. Rab29 fast exchange mutants: characterization of a challenging Rab GTPase. protocols.io https://dx.doi.org/10.17504/protocols.io.bffrjjm6 · DOI
  16. 10.1074/jbc.M708718200 · DOI
  17. 10.1073/pnas.1523708113 · DOI
  18. 10.1042/BCJ20160557 · DOI · Paper page
  19. 10.7554/eLife.16950 · DOI · Paper page
  20. 10.1002/pro.3280 · DOI
  21. 2020, Endogenous Rab29 does not impact basal or stimulated LRRK2 pathway activity, Biochem J, 477, 4397, 10.1042/BCJ20200458 · DOI
  22. 10.1111/j.1471-4159.2009.06358.x · DOI
  23. 10.7554/eLife.67900 · DOI · Paper page
  24. Knebel A , Berndsen K , Lis P , Alessi DR . 2021. Expression and purification of Rab10 (1-181) stoichiometrically phosphorylated at Thr73 (the LRRK2 site). protocols.io https://dx.doi.org/10.17504/protocols.io.bvjxn4pn · DOI
  25. 10.1038/s41598-021-88802-7 · DOI
  26. 2016, LRRK2 and RAB7L1 coordinately regulate axonal morphology and lysosome integrity in diverse cellular contexts, SciRep, 6, 29945
  27. 10.1093/hmg/ddx410 · DOI · Paper page
  28. Madero-Pérez J , Fernández B , Lara Ordóñez AJ , Fdez E , Lobbestael E , Baekelandt V , Hilfiker S . RAB7L1-Mediated Relocalization of LRRK2 to the Golgi Complex Causes Centrosomal Deficits via RAB8A. Front Mol Neurosci. 2018 Nov 13;11:417. · DOI · Paper page
  29. 10.1080/21541248.2019.1666623 · DOI
  30. 10.1371/JOURNAL.PBIO.2005970 · DOI
  31. 2022, ColabFold: making protein folding accessible to all, Nat Methods, 19, 679, 10.1038/s41592-022-01488-1 · DOI · Paper page
  32. 10.1016/j.cell.2021.05.004 · DOI
  33. 10.1212/01.wnl.0000278115.50741.4e · DOI
  34. 10.1002/jcc.20084 · DOI
  35. 10.1091/mbc.E16-10-0737 · DOI
  36. 10.15252/embj.201798099 · DOI · Paper page
  37. Purlyte E , Kalogeropulou A , Tonelli F , Alessi DR 2022. Immunofluorescence-based assay to assess LRRK2 association with microtubules in HEK293 cells. Protocols.io https://dx.doi.org/10.17504/protocols.io.b5jhq4j6 · DOI
  38. 10.1093/hmg/ddu138 · DOI · Paper page
  39. 10.1083/jcb.200312034 · DOI · Paper page
  40. 10.1074/jbc.M109.025437 · DOI
  41. 10.1073/pnas.2005894118 · DOI
  42. 10.1083/jcb.149.4.901 · DOI · Paper page
  43. 10.7554/eLife.31012 · DOI · Paper page
  44. 10.7554/eLife.12813 · DOI · Paper page
  45. 10.1186/s12859-021-04344-9 · DOI
  46. 2021, Impact of Type II LRRK2 inhibitors on signaling and mitophagy, Biochem J, 478, 3555, 10.1042/BCJ20210375 · DOI
  47. 10.1083/jcb.201608123 · DOI
  48. Tonelli, F and Alessi D . 2021. Quantitative Immunoblotting Analysis of LRRK2 Signalling Pathway. Protocols.io https://dx.doi.org/10.17504/protocols.io.bsgrnbv6 · DOI
  49. Vides EG , Pfeffer SR 2021. Microscale Thermophoresis determination of Rab29 binding to LRRK2 Armadillo Domain. Protocols.io https://dx.doi.org/10.17504/protocols.io.bvvmn646 · DOI
  50. 2020, PINK1-dependent phosphorylation of Serine111 within the SF3 motif of Rab GTPases impairs effector interactions and LRRK2-mediated phosphorylation at Threonine72, Biochem J, 477, 1651, 10.1042/BCJ20190664 · DOI
  51. 10.1371/journal.pone.0111632 · DOI
  52. 10.1016/j.str.2020.01.005 · DOI · Paper page
  53. 2022, Structural basis of human LRRK2 membrane recruitment and activation, bioRxiv, 2022, 04

Metadata

Authors
Vides, E. G., Adhikari, A., Chiang, C. Y., Lis, P., Purlyte, E., Limouse, C., Shumate, J. L., Spínola-Lasso, E., Dhekne, H. S., Alessi, D. R., & Pfeffer, S. R.
Affiliations
  • Stanford Medicine (US)
  • University of Dundee (GB)
  • Universidad de Las Palmas de Gran Canaria (ES)
Corresponding author
Pfeffer, Suzanne R.
Venue
eLife
Publisher
openRxiv
Published
2022-04-25
Volume
11
ISSN
2050-084X (ISSN-L)
OpenAlex
W4296793671
Cited by
63
References
1
Citations by year
2026: 13 · 2025: 15 · 2024: 10 · 2023: 19 · 2022: 6
FWCI
6.58
Type
journal article
Language
en
Open access
Licence
cc-by
Locations
  • eLife (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • Discovery Research Portal (University of Dundee) (publishedVersion, cc-by)
  • Acceda (Universidad de Las Palmas de Gran Canaria) (submittedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
  • Michael J. Fox Foundation for Parkinson's Research (ASAP‐000463, 17298)
  • GlaxoSmithKline
  • Merck KGaA
  • Parkinson's UK (H-1701)
  • Medical Research Council (MC_UU_00018/1)
  • European Social Fund
Topics
  • Health Sciences › Medicine › Clinical Neurology › Parkinson's Disease Mechanisms and Treatments
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
Keywords
LRRK2, Parkinson's disease, Rab29, Rab8a, Rab10, armadillo domain, Golgi apparatus, kinase activation, lipid bilayer reconstitution
MeSH terms
Leucine-Rich Repeat Serine-Threonine Protein Kinase-2, Leucine, Lipid Bilayers, Phosphorylation, rab GTP-Binding Proteins

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review