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microRNAs exhibit high frequency genomic alterations in human cancer

Open access
Zhang, Lin, Huang, Jia, Yang, Nuo, Greshock, Joel, Megraw, Molly S., Giannakakis, Antonis, Liang, Shun, Naylor, Tara L., Barchetti, Andrea, Ward, Michelle R., Yao, George, Medina, Angelica, O’Brien-Jenkins, Ann, Katsaros, Dionyssios, Hatzigeorgiou, Artemis, Gimotty, Phyllis A., Weber, Barbara L., Coukos, George·2006·Proceedings of the National Academy of Sciences

Abstract

MicroRNAs (miRNAs) are endogenous noncoding RNAs, which negatively regulate gene expression. To determine genomewide miRNA DNA copy number abnormalities in cancer, 283 known human miRNA genes were analyzed by high-resolution array-based comparative genomic hybridization in 227 human ovarian cancer, breast cancer, and melanoma specimens. A high proportion of genomic loci containing miRNA genes exhibited DNA copy number alterations in ovarian cancer (37.1%), breast cancer (72.8%), and melanoma (85.9%), where copy number alterations observed in >15% tumors were considered significant for each miRNA gene. We identified 41 miRNA genes with gene copy number changes that were shared among the three cancer types (26 with gains and 15 with losses) as well as miRNA genes with copy number changes that were unique to each tumor type. Importantly, we show that miRNA copy changes correlate with miRNA expression. Finally, we identified high frequency copy number abnormalities of Dicer1 , Argonaute2 , and other miRNA-associated genes in breast and ovarian cancer as well as melanoma. These findings support the notion that copy number alterations of miRNAs and their regulatory genes are highly prevalent in cancer and may account partly for the frequent miRNA gene deregulation reported in several tumor types.

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Metadata

Authors
Zhang, L., Huang, J., Yang, N., Greshock, J., Megraw, M. S., Giannakakis, A., Liang, S., Naylor, T. L., Barchetti, A., Ward, M. R., Yao, G., Medina, A., O’Brien-Jenkins, A., Katsaros, D., Hatzigeorgiou, A., Gimotty, P. A., Weber, B. L., & Coukos, G.
Venue
Proceedings of the National Academy of Sciences
Published
2006-06-13
Volume
103
Issue
24
Pages
9136-9141
ISSN
  • 0027-8424 (ISSN-L)
  • 1091-6490
OpenAlex
W1967342065
Cited by
1,031
References
11
FWCI
27.69
Type
journal article
Language
en
Open access
green

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CoChat. (2026). Citation check: microRNAs exhibit high frequency genomic alterations in human cancer. https://app.cochat.ai/papers/10.1073/pnas.0508889103
The paper
Zhang, L., Huang, J., Yang, N., Greshock, J., Megraw, M. S., Giannakakis, A., Liang, S., Naylor, T. L., Barchetti, A., Ward, M. R., Yao, G., Medina, A., O’Brien-Jenkins, A., Katsaros, D., Hatzigeorgiou, A., Gimotty, P. A., Weber, B. L., & Coukos, G. (2006). microRNAs exhibit high frequency genomic alterations in human cancer. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.0508889103

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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

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