Exploring the Genomes of East African Indicine Cattle Breeds Reveals Signature of Selection for Tropical Environmental Adaptation Traits

The Sequence Alignment/Map format and SAMtools

Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041 · see citing works

Fast gapped-read alignment with Bowtie 2

Langmead, B., & Salzberg, S. L. (2012) · Nature Methods · doi:10.1038/nmeth.1923 · Cited by 56,400 · see citing works

PLINK: a tool set for whole-genome association and population-based linkage analyses.

Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A. R., Bender, D., Maller, J., Sklar, P., de Bakker, P. I. W., Daly, M. J., et al. (2007) · The American Journal of Human Genetics · doi:10.1086/519795 · Cited by 34,089 · see citing works

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A., Garimella, K., Altshuler, D., Gabriel, S., Daly, M., et al. (2010) · Genome Research · doi:10.1101/gr.107524.110 · Cited by 27,895 · see citing works

Detecting the number of clusters of individuals using the software structure: a simulation study

Evanno, G., Regnaut, S., & Goudet, J. (2005) · Molecular Ecology · doi:10.1111/j.1365-294x.2005.02553.x · Cited by 21,540 · see citing works

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

Huang, D. W., Sherman, B. T., & Lempicki, R. A. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkn923 · Cited by 14,108 · see citing works

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w ¹¹¹⁸ ; iso-2; iso-3

Cingolani, P., Platts, A., Wang, L. L., Coon, M., Nguyen, T., Wang, L., Land, S. J., Lu, X., & Ruden, D. M. (2012) · Fly · doi:10.4161/fly.19695 · Cited by 11,816 · see citing works

Principal components analysis corrects for stratification in genome-wide association studies

Price, A. L., Patterson, N. J., Plenge, R. M., Weinblatt, M. E., Shadick, N. A., & Reich, D. (2006) · Nature Genetics · doi:10.1038/ng1847 · Cited by 10,248 · see citing works

Rapid and Accurate Haplotype Phasing and Missing-Data Inference for Whole-Genome Association Studies By Use of Localized Haplotype Clustering

Browning, S. R., & Browning, B. L. (2007) · The American Journal of Human Genetics · doi:10.1086/521987 · Cited by 3,138 · see citing works

Genome-wide detection and characterization of positive selection in human populations

The International HapMap Consortium, Sabeti, P. C., Varilly, P., Fry, B., Lohmueller, J., Hostetter, E., Cotsapas, C., Xie, X., Byrne, E. H., McCarroll, S. A., et al. (2007) · Nature · doi:10.1038/nature06250 · Cited by 2,131 · see citing works

The cornified envelope: a model of cell death in the skin

Candi, E., Schmidt, R., & Melino, G. (2005) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1619 · Cited by 1,776 · see citing works

The Immunological Synapse

Bromley, S. K., Burack, R., Johnson, K. G., Somersalo, K., Sims, T. N., Sumen, C., Davis, M. M., Shaw, A. S., Allen, P. M., & Dustin, M. L. (2001) · Annual Review of Immunology · doi:10.1146/annurev.immunol.19.1.375 · Cited by 979 · see citing works

Population differentiation as a test for selective sweepsPreprint

Chen, H., Patterson, N. J., & Reich, D. (2010) · Genome Research · doi:10.1101/gr.100545.109 · Cited by 888 · see citing works

Effects of heat stress on mammalian reproduction

Hansen, P. J. (2009) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2009.0131 · Cited by 750 · see citing works

Signals of recent positive selection in a worldwide sample of human populations

Pickrell, J. K., Coop, G., Novembre, J., Kudaravalli, S., Li, J. Z., Absher, D., Srinivasan, B. S., Barsh, G. S., Myers, R. M., Feldman, M. W., et al. (2009) · Genome Research · doi:10.1101/gr.087577.108 · Cited by 717 · see citing works

Physiological and cellular adaptations of zebu cattle to thermal stress

Hansen, P. J. (2004) · Animal Reproduction Science · doi:10.1016/j.anireprosci.2004.04.011 · Cited by 642 · see citing works

African Pastoralism: Genetic Imprints of Origins and Migrations

Hanotte, O., Bradley, D. G., Ochieng, J. W., Verjee, Y., Hill, E. W., & Rege, J. E. O. (2002) · Science · doi:10.1126/science.1069878 · Cited by 567 · see citing works

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data

Lee, T., Guo, H., Wang, X., Kim, C., & Paterson, A. H. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-162 · Cited by 549 · see citing works

Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle

Decker, J. E., McKay, S. D., Rolf, M. M., Kim, J., Molina Alcalá, A., Sonstegard, T. S., Hanotte, O., Götherström, A., Seabury, C. M., Praharani, L., et al. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004254 · Cited by 521 · see citing works

The Domestication of Animals

Zeder, M. A. (2012) · Journal of Anthropological Research · doi:10.3998/jar.0521004.0068.201 · Cited by 406 · see citing works

Host Immunity to Ticks

Wikel, S. K. (1996) · Annual Review of Entomology · doi:10.1146/annurev.en.41.010196.000245 · Cited by 353 · see citing works

Animal Foraging and the Evolution of Goal‐Directed Cognition

Hills, T. T. (2006) · Cognitive Science · doi:10.1207/s15516709cog0000_50 · Cited by 331 · see citing works

- Invited Review - African Indigenous Cattle: Unique Genetic Resources in a Rapidly Changing World

Mwai, O., Hanotte, O., Kwon, Y.-J., & Cho, S. (2015) · Asian-Australasian Journal of Animal Sciences · doi:10.5713/ajas.15.0002r · Cited by 300 · see citing works

Gastric Juice: A Barrier Against Infectious Diseases

Martinsen, T. C., Bergh, K., & Waldum, H. L. (2005) · Basic & Clinical Pharmacology & Toxicology · doi:10.1111/j.1742-7843.2005.pto960202.x · Cited by 298 · see citing works

Multiple genomic signatures of selection in goats and sheep indigenous to a hot arid environment

Kim, E.-S., Elbeltagy, A. R., Aboul-Naga, A. M., Rischkowsky, B., Sayre, B. L., Mwacharo, J. M., & Rothschild, M. F. (2015) · Heredity · doi:10.1038/hdy.2015.94 · Cited by 294 · see citing works

Interactions between the “cognitive” and “metabolic” brain in the control of food intake

Berthoud, H. (2007) · Physiology & Behavior · doi:10.1016/j.physbeh.2006.12.016 · Cited by 289 · see citing works

On the Origin of Cattle: How Aurochs Became Cattle and Colonized the World

Ajmone‐Marsan, P., Garcia, J. F., & Lenstra, J. A. (2010) · Evolutionary Anthropology Issues News and Reviews · doi:10.1002/evan.20267 · Cited by 287 · see citing works

Colours of domestication

Cieslak, M., Reißmann, M., Hofreiter, M., & Ludwig, A. (2011) · Biological reviews/Biological reviews of the Cambridge Philosophical Society · doi:10.1111/j.1469-185x.2011.00177.x · Cited by 283 · see citing works

The Genome Landscape of Indigenous African Cattle

Kim, J., Hanotte, O., Mwai, O. A., Dessie, T., Bashir, S., Diallo, B., Agaba, M., Kim, K., Kwak, W., Sung, S., et al. (2017) · Genome biology · doi:10.1186/s13059-017-1153-y · Cited by 271 · see citing works

Genetics of adaptation in domestic farm animals: A review

Mirkena, T., Duguma, G., Haile, A., Tibbo, M., Okeyo, A. M., Wurzinger, M., & Sölkner, J. (2010) · Livestock Science · doi:10.1016/j.livsci.2010.05.003 · Cited by 214 · see citing works

A whole genome Bayesian scan for adaptive genetic divergence in West African cattle

Gautier, M., Flori, L., Riebler, A., Jaffrézic, F., Laloë, D., Gut, I. G., Moazami‐Goudarzi, K., & Foulley, J. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-550 · Cited by 196 · see citing works

The state of African cattle genetic resources I. Classification framework and identification of threatened and extinct breeds

Rege, J. E. O. (1999) · Animal Genetic Resources Information · doi:10.1017/s1014233900003448 · Cited by 167 · see citing works

Retinoic Acid Activates Two Pathways Required for Meiosis in Mice

Koubova, J., Hu, Y., Bhattacharyya, T., Soh, Y. Q. S., Gill, M. E., Goodheart, M. L., Hogarth, C. A., Griswold, M. D., & Page, D. C. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004541 · Cited by 164 · see citing works

The ethology of domestic animals: an introductory text

Held, S. D. E. (2017) · CABI eBooks · doi:10.1079/9781786391650.0000 · Cited by 152 · see citing works

Genome-Wide Scan for Selection Signatures in Six Cattle Breeds in South Africa

Makina, S. O., Muchadeyi, F. C., van Marle-Köster, E., Taylor, J. F., Makgahlela, M. L., & Maiwashe, A. (2015) · Genetics Selection Evolution · doi:10.1186/s12711-015-0173-x · Cited by 125 · see citing works

Signatures of positive selection in East African Shorthorn Zebu: A genome-wide single nucleotide polymorphism analysis

Bahbahani, H. M., Clifford, H., Wragg, D., Mbole-Kariuki, M. N., Tassell, C. P. V., Sonstegard, T. S., Woolhouse, M. E. J., & Hanotte, O. (2015) · Scientific Reports · doi:10.1038/srep11729 · Cited by 110 · see citing works

The Ovarian Renin–Angiotensin System in Reproductive Physiology

Yoshimura, Y. (1997) · Frontiers in Neuroendocrinology · doi:10.1006/frne.1997.0152 · Cited by 108 · see citing works

Endocannabinoids mediate acute fear adaptation via glutamatergic neurons independently of corticotropin‐releasing hormone signaling

Kamprath, K., Plendl, W., Marsicano, G., Deussing, J. M., Wurst, W., Lutz, B., & Wotjak, C. T. (2008) · Genes Brain & Behavior · doi:10.1111/j.1601-183x.2008.00463.x · Cited by 104 · see citing works

Melanocortin-5 receptor: A marker of human sebocyte differentiation

Zhang, L., Li, W.-H., Anthonavage, M., & Eisinger, M. (2006) · Peptides · doi:10.1016/j.peptides.2005.05.030 · Cited by 103 · see citing works

The ethology of domestic animals: an introductory text

(2002) · CABI Publishing eBooks · doi:10.1079/9780851996028.0000 · Cited by 102 · see citing works

Time to Tap Africa's Livestock Genomes

Hanotte, O., Dessie, T., & Kemp, S. J. (2010) · Science · doi:10.1126/science.1186254 · Cited by 98 · see citing works

Nutritional Regulation of Gastric Secretion, Digestion and Emptying

Low, A. G. (1990) · Nutrition Research Reviews · doi:10.1079/nrr19900014 · Cited by 97 · see citing works

The evolution of tropical adaptation: comparing taurine and zebu cattle

Chan, E. K. F., Nagaraj, S. H., & Reverter, A. (2010) · Animal Genetics · doi:10.1111/j.1365-2052.2010.02053.x · Cited by 94 · see citing works

Sphingosine 1-Phosphate Protects Bovine Oocytes from Heat Shock During Maturation1

Roth, Z., & Hansen, P. J. (2004) · Biology of Reproduction · doi:10.1095/biolreprod.104.031989 · Cited by 94 · see citing works

Association of BoLA-DRB3.2 alleles with tick (Boophilus microplus) resistance in cattle.

Martinez, M. L., Machado, M. A., do Nascimento, C. S., da Silva, M. V. G. B., Teodoro, R. L., Furlong, J., Prata, M. C. D. A., Campos, A. L., Guimarães, M. F. M., Azevedo, A. L. S., et al. (2006) · PubMed · Cited by 92 · see citing works

A genome‐wide association study of heat stress‐associated SNP s in catfish

Jin, Y., Zhou, T., Geng, X., Liu, S., Chen, A., Yao, J., Jiang, C., Tan, S., Su, B., & Liu, Z. (2016) · Animal Genetics · doi:10.1111/age.12482 · Cited by 92 · see citing works

Genotype differences and their impact on digestive tract function of ruminants: a review

Hegarty, R. S. (2004) · Australian Journal of Experimental Agriculture · doi:10.1071/ea02148 · Cited by 90 · see citing works

Signatures of Selection for Environmental Adaptation and Zebu × Taurine Hybrid Fitness in East African Shorthorn Zebu

Bahbahani, H. M., Tijjani, A., Mukasa, C., Wragg, D., Almathen, F. S., Nash, O., Akpa, G. N., Mbole-Kariuki, M. N., Malla, S., Woolhouse, M. E. J., et al. (2017) · Frontiers in Genetics · doi:10.3389/fgene.2017.00068 · Cited by 89 · see citing works

Genetic and expression analysis of cattle identifies candidate genes in pathways responding to <i>Trypanosoma congolense</i> infection

Noyes, H., Brass, A., Obara, I., Anderson, S., Archibald, A. L., Bradley, D. G., Fisher, P., Freeman, A., Gibson, J., Gicheru, M., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1013486108 · Cited by 88 · see citing works

Breeding strategies for tick resistance in tropical cattle: a sustainable approach for tick control

Shyma, K. P., Gupta, J. P., & Singh, V. (2013) · Journal of Parasitic Diseases · doi:10.1007/s12639-013-0294-5 · Cited by 87 · see citing works

Gene expression in the skin of Bos taurus and Bos indicus cattle infested with the cattle tick, Rhipicephalus (Boophilus) microplus

Piper, E. K., Jackson, L. A., Bagnall, N. H., Kongsuwan, K., Tabor, A. E., & Jonsson, N. N. (2008) · Veterinary Immunology and Immunopathology · doi:10.1016/j.vetimm.2008.06.011 · Cited by 87 · see citing works

The emerging role for sphingolipids in the eukaryotic heat shock response

Jenkins, G. M. (2003) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-003-2239-0 · Cited by 84 · see citing works

Molecular genetic approaches for identifying the basis of variation in resistance to tick infestation in cattle

Neto, L. R. P., Jonsson, N. N., D’Occhio, M. J., & Barendse, W. (2011) · Veterinary Parasitology · doi:10.1016/j.vetpar.2011.05.048 · Cited by 82 · see citing works

Involvement of Wnt, Eda and Shh at defined stages of sweat gland development

Cui, C.-Y., Yin, M., Sima, J., Childress, V., Michel, M., Piao, Y., & Schlessinger, D. (2014) · Development · doi:10.1242/dev.109231 · Cited by 80 · see citing works

Towards a genomics approach to tick (Acari: Ixodidae) control in cattle: A review

Mapholi, N. O., Marufu, M. C., Maiwashe, A., Banga, C. B., Muchenje, V., MacNeil, M. D., Chimonyo, M., & Dzama, K. (2014) · Ticks and Tick-borne Diseases · doi:10.1016/j.ttbdis.2014.04.006 · Cited by 78 · see citing works

Relationships between tick counts and coat characteristics in Nguni and Bonsmara cattle reared on semiarid rangelands in South Africa

Marufu, M. C., Qokweni, L., Chimonyo, M., & Dzama, K. (2011) · Ticks and Tick-borne Diseases · doi:10.1016/j.ttbdis.2011.07.001 · Cited by 77 · see citing works

Do basophils play a role in immunity against parasites?

Falcone, F. H., PRITCHARD, D. I., & Gibbs, B. F. (2001) · Trends in Parasitology · doi:10.1016/s1471-4922(00)01846-8 · Cited by 77 · see citing works

Resistance of cattle of various genetic groups to the tick Rhipicephalus microplus and the relationship with coat traits

Ibelli, A. M. G., Ribeiro, A. R. B., Giglioti, R., Regitano, L. C. D. A., de Alencar, M. M., Chagas, A. C. D. S., Paçó, A. L., de Oliveira, H. N., Duarte, J. M. S., & Oliveira, M. C. D. S. (2011) · Veterinary Parasitology · doi:10.1016/j.vetpar.2011.11.019 · Cited by 74 · see citing works

Polymorphisms within the canine MLPH gene are associated with dilute coat color in dogs

Philipp, U., Hamann, H., Mecklenburg, L., Nishino, S., Mignot, E. J.-M., Günzel‐Apel, A., Schmutz, S. M., & Leeb, T. (2005) · BMC Genetics · doi:10.1186/1471-2156-6-34 · Cited by 72 · see citing works

Using genetics to control cattle parasites—the Rockhampton experience

Frisch, J. E., O’Neill, C. J., & Kelly, M. J. (2000) · International Journal for Parasitology · doi:10.1016/s0020-7519(00)00010-2 · Cited by 71 · see citing works

Selection methods for resistance to and tolerance of helminths in livestock

Mcmanus, C. M., Paim, T. D. P., de Melo, C. B., Brasil, B. S. A. F., & Paiva, S. R. (2014) · Parasite · doi:10.1051/parasite/2014055 · Cited by 69 · see citing works

Signatures of positive selection in African Butana and Kenana dairy zebu cattle

Bahbahani, H., Salim, B., Almathen, F., Al Enezi, F., Mwacharo, J. M., & Hanotte, O. (2018) · PLOS ONE · doi:10.1371/journal.pone.0190446 · Cited by 67 · see citing works

Sex and hedgehog: roles of genes in the hedgehog signaling pathway in mammalian sexual differentiation

Franco, H. L., & Yao, H. H. (2011) · Chromosome Research · doi:10.1007/s10577-011-9254-z · Cited by 65 · see citing works

Genomic Regions Associated with Sheep Resistance to Gastrointestinal Nematodes

Benavides, M. V., Sonstegard, T. S., & Tassell, C. P. V. (2016) · Trends in Parasitology · doi:10.1016/j.pt.2016.03.007 · Cited by 64 · see citing works

Differences of skin morphology in Bos indicus, Bos taurus, and their crossbreds

Wang, J., Duangjinda, M., Vajrabukka, C., & Katawatin, S. (2013) · International Journal of Biometeorology · doi:10.1007/s00484-013-0700-9 · Cited by 63 · see citing works

Gene expression profiling of Hereford Shorthorn cattle following challenge with Boophilus microplus tick larvae

Wang, Y. H., Reverter, A., KEMP, D. H., McWilliam, S. M., Ingham, A. B., Davis, C., Moore, R. J., & Lehnert, S. A. (2007) · Australian Journal of Experimental Agriculture · doi:10.1071/ea07012 · Cited by 58 · see citing works

Melanocortin-5 receptor and sebogenesis

Zhang, L., Li, W., Anthonavage, M., Pappas, A., Rossetti, D., CAVENDER, D. E., Seiberg, M., & Eisinger, M. (2011) · European Journal of Pharmacology · doi:10.1016/j.ejphar.2010.10.100 · Cited by 56 · see citing works

Activation of Several Key Components of the Epidermal Differentiation Pathway in Cattle Following Infestation with the Cattle Tick, Rhipicephalus (Boophilus) Microplus

Kongsuwan, K., Josh, P., Colgrave, M. L., Bagnall, N. H., Gough, J., Burns, B., & Pearson, R. (2010) · International Journal for Parasitology · doi:10.1016/j.ijpara.2009.10.013 · Cited by 48 · see citing works

Fibroblast Growth Factor Receptor Two (FGFR2) Regulates Uterine Epithelial Integrity and Fertility in Mice

Filant, J., DeMayo, F. J., Pru, J. K., Lydon, J. P., & Spencer, T. E. (2013) · Biology of Reproduction · doi:10.1095/biolreprod.113.114496 · Cited by 48 · see citing works

Pheomelanin Coat Colour Dilution in French Cattle Breeds is not Correlated with the TYR, TYRP1 and DCT Transcription Levels

Guibert, S., Girardot, M., Levéziel, H. H., Julien, R., & Oulmouden, A. (2004) · Pigment Cell Research · doi:10.1111/j.1600-0749.2004.00152.x · Cited by 47 · see citing works

Deciphering the Genetic Blueprint behind Holstein Milk Proteins and Production

Lee, H. J., Kim, J., Lee, T., Son, J.-K., Yoon, H., Baek, K., Jeong, J. Y., Cho, Y.-M., Lee, K., Yang, B., et al. (2014) · Genome Biology and Evolution · doi:10.1093/gbe/evu102 · Cited by 46 · see citing works

Use of a candidate gene array to delineate gene expression patterns in cattle selected for resistance or susceptibility to intestinal nematodes

Araújo, R. N., Padilha, T., Zarlenga, D. S., Sonstegard, T. S., Connor, E. E., Tassel, C. P. V., Lima, W. S., Nascimento, E., & Gasbarre, L. C. (2008) · Veterinary Parasitology · doi:10.1016/j.vetpar.2008.12.017 · Cited by 44 · see citing works

Genomic signatures of adaptive introgression and environmental adaptation in the Sheko cattle of southwest Ethiopia

Bahbahani, H. M., Afana, A., & Wragg, D. (2018) · PLoS ONE · doi:10.1371/journal.pone.0202479 · Cited by 37 · see citing works

Responses to Dehydration in the One-Humped Camel and Effects of Blocking the Renin-Angiotensin System

Ali, M. A., Adem, A., Chandranath, I. S., Benedict, S., Yasin, J., Nagelkerke, N., Nyberg, F., Lewis, L. K., Yandle, T. G., Nicholls, G. M., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0037299 · Cited by 34 · see citing works

Methods for mapping and categorization of DNA sequence reads from allopolyploid organisms

Page, J. T., & Udall, J. A. (2015) · BMC Genetics · doi:10.1186/1471-2156-16-s2-s4 · Cited by 32 · see citing works

Expression of intracellular calcium signalling genes in cattle skin during tick infestation

Bagnall, N. H., Gough, J. M., Cadogan, L. C., Burns, B. M., & Kongsuwan, K. (2008) · Parasite Immunology · doi:10.1111/j.1365-3024.2008.01092.x · Cited by 31 · see citing works

Investigation on Association and Expression ofESR2as a Candidate Gene for Boar Sperm Quality and Fertility

Gunawan, A., Cinar, M., Uddin, M. J., Kaewmala, K., Tesfaye, D., Phatsara, C., Tholen, E., Looft, C., & Schellander, K. (2011) · Reproduction in Domestic Animals · doi:10.1111/j.1439-0531.2011.01968.x · Cited by 26 · see citing works

Cellular Heat Acclimation Regulates Cell Growth, Cell Morphology, Mitogen-activated Protein Kinase Activation, and Expression of Aquaporins in Mouse Fibroblast Cells

Sugimoto, N., Shido, O., Matsuzaki, K., Ohno‐Shosaku, T., Hitomi, Y., Tanaka, M., Sawaki, T., Fujita, Y., Kawanami, T., Masaki, Y., et al. (2012) · Cellular Physiology and Biochemistry · doi:10.1159/000339038 · Cited by 23 · see citing works

Physiological functions of phospholipase Cδ1 and phospholipase Cδ3

Nakamura, Y., Kanemarum, K., & Fukami, K. (2013) · Advances in Biological Regulation · doi:10.1016/j.jbior.2013.07.003 · Cited by 23 · see citing works

Genome-wide detection and characterization of positive selection in Korean Native Black Pig from Jeju Island

Kim, J., Cho, S., Caetano-Anollés, K., Kim, H., & Ryu, Y. (2015) · BMC Genetics · doi:10.1186/s12863-014-0160-1 · Cited by 22 · see citing works

Tropically adapted cattle of Africa: perspectives on potential role of copy number variations

Wang, M. D., Dzama, K., Rees, D. J. G., & Muchadeyi, F. C. (2015) · Animal Genetics · doi:10.1111/age.12391 · Cited by 20 · see citing works

Identification of Genes Involved with Tick Infestation in Bos taurus and Bos indicus

Kongsuwan, K., Piper, E. K., Bagnall, N. H., Ryan, K., Moolhuijzen, P., Bellgard, M., Tabor, A. E., Jackson, L. A., & Jonsson, N. N. (2008) · Developments in biologicals · doi:10.1159/000317146 · Cited by 19 · see citing works

COGA phenotypes and linkages on chromosome 2

Wiener, H. W., Go, R. C. P., Tiwari, H. K., George, V. T., & Page, G. P. (2005) · BMC Genetics · doi:10.1186/1471-2156-6-s1-s125 · Cited by 11 · see citing works

[The brain catecholamines during domestication of the silver fox Vulpes fulvus].

Nikulina, E. M. (1990) · PubMed · Cited by 11 · see citing works

Regulation of Hedgehog Signaling in Chicken Embryonic Stem Cells Differentiation Into Male Germ Cells (Gallus)

Chen, H., Zuo, Q., Wang, Y., Ahmed, M. F. E. M., Jin, K., Song, J., Zhang, Y., & Li, B. (2016) · Journal of Cellular Biochemistry · doi:10.1002/jcb.25796 · Cited by 11 · see citing works

Whole-genome sequence analysis unveils different origins of European and Asiatic mouflon and domestication-related genes in sheep

Chen, Z., Xu, Y., Xie, X.-L., Wang, D., Aguilar‐Gómez, D., Liu, G., Li, X., Esmailizadeh, A., Rezaei, V., Kantanen, J., et al. (2021) · Communications Biology · doi:10.1038/s42003-021-02817-4 · Cited by 89 · see citing works

Evolution and Domestication of the Bovini Species

Zhang, K., Lenstra, J. A., Zhang, S., Liu, W., & Liu, J. (2020) · Animal Genetics · doi:10.1111/age.12974 · Cited by 82 · see citing works

Genome‐wide scan of selection signatures in Dehong humped cattle for heat tolerance and disease resistance

Li, R., Li, C., Chen, H., Li, R., Chong, Q., Xiao, H., & Chen, S. (2019) · Animal Genetics · doi:10.1111/age.12896 · Cited by 66 · see citing works

Genome-Wide Local Ancestry and Direct Evidence for Mitonuclear Coadaptation in African Hybrid Cattle Populations ( Bos Taurus/Indicus)

Ward, J. A., McHugo, G. P., Dover, M. J., Hall, T. J., Ng’ang’a, S. I., Sonstegard, T. S., Bradley, D. G., Frantz, L., Salter‐Townshend, M., & MacHugh, D. E. (2022) · iScience · doi:10.1016/j.isci.2022.104672 · Cited by 45 · see citing works

Population differentiated copy number variation of Bos taurus, Bos indicus and their African hybrids

Jang, J., Terefe, E., Kim, K., Lee, Y. H., Belay, G., Tijjani, A., Han, J., Hanotte, O., & Kim, H. (2021) · BMC Genomics · doi:10.1186/s12864-021-07808-7 · Cited by 33 · see citing works

Human adaptation, demography and cattle domestication: an overview of the complexity of lactase persistence in Africa

Campbell, M. C., & Ranciaro, A. (2021) · Human Molecular Genetics · doi:10.1093/hmg/ddab027 · Cited by 32 · see citing works

Discovery of Genomic Characteristics and Selection Signatures in Southern Chinese Local Cattle

Liu, Y., Xu, L., Yang, L., Zhao, G., Li, J., Liu, D., & Li, Y. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2020.533052 · Cited by 27 · see citing works

Candidate signatures of positive selection for environmental adaptation in indigenous African cattle: A review

Kambal, S., Tijjani, A., Ibrahim, S. A. E., Ahmed, M. A., Mwacharo, J. M., & Hanotte, O. (2023) · Animal Genetics · doi:10.1111/age.13353 · Cited by 27 · see citing works

Genomic responses to climatic challenges in beef cattle: A review

Colombi, D., Perini, F., Bettini, S., Mastrangelo, S., Abeni, F., Conte, G., Marletta, D., Cassandro, M., Bernabucci, U., Ciampolini, R., et al. (2024) · Animal Genetics · doi:10.1111/age.13474 · Cited by 24 · see citing works

Signatures of positive selection for local adaptation of African native cattle populations: A review

Ayalew, W., Wu, X., Tarekegn, G. M., Chu, M., Liang, C., Tessema, T. S., & Yan, P. (2023) · Journal of Integrative Agriculture · doi:10.1016/j.jia.2023.01.004 · Cited by 24 · see citing works

Unraveling Admixture, Inbreeding, and Recent Selection Signatures in West African Indigenous Cattle Populations in Benin

Vanvanhossou, S. F. U., Yin, T., Scheper, C., Fries, R., Dossa, L. H., & König, S. (2021) · Frontiers in Genetics · doi:10.3389/fgene.2021.657282 · Cited by 19 · see citing works

Whole-Genome Analysis Deciphers Population Structure and Genetic Introgression Among Bovine Species

Li, R., Chen, S., Li, C., Xiao, H., Costa, V., Bhuiyan, M. S. A., Baig, M., & Beja‐Pereira, A. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.847492 · Cited by 8 · see citing works

A comprehensive genome-wide analysis for signatures of selection in goat (genus Capra) revealed new candidate genes for environmental adaptation and productive traits

Pallotti, S., Garcia, A. F. R., Deiana, G., Antonini, M., Zhou, J., Sun, H., Renieri, C., & Napolioni, V. (2025) · BMC Genomics · doi:10.1186/s12864-025-12133-4 · Cited by 6 · see citing works

Drivers of heartwater losses in South Africa: a Poisson and negative binomial regression approach

Molony, D. D., Lombard, W. A., Bahta, Y. T., & Nyaki, S. A. (2025) · Cogent Food & Agriculture · doi:10.1080/23311932.2025.2568755 · Cited by 4 · see citing works

Breeding pure and crossbreeds of European cattle breeds for milk production improvement under tropical climate conditions—a review

Ndihokubwayo, F., & Koç, A. (2023) · Tropical Animal Health and Production · doi:10.1007/s11250-023-03868-x · Cited by 5 · see citing works

Detection and functional assessment of structural variants using whole-genome re-sequencing data in Nellore cattle

Garzón, N. A. M., Mota, L. F. M., Vargas, G., Arikawa, L. M., Fonseca, L. F. S., Júnior, G. A. F., Carvalheiro, R., & de Albuquerque, L. G. (2025) · Scientific Reports · doi:10.1038/s41598-025-14139-0 · Cited by 2 · see citing works

Bovine Genome Database: new curated collection of selective sweeps in bovine populations across the world

Kambal, S., Walsh, A. T., Sivasankaran, S. K., Adossa, N. A., Skarlupka, J. H., Hanotte, O., Suen, G., & Elsik, C. G. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkaf1214 · Cited by 2 · see citing works

Genome-wide analysis reveals differential admixture dynamics and historical demographic contractions in African cattle

Mavunga, T. K., Sölkner, J., Mészáros, G., Pichler, R., Zorobouragui, L., TRAORE, A., Tapsoba, A. S. R., Hamed, H., Hassan, Y. A., Chileshe, B., et al. (2026) · Scientific Reports · doi:10.1038/s41598-026-36562-7 · Cited by 2 · see citing works

The Genomic Landscape of Cattle: Domestication, Dispersal, and Adaptive Evolution

Liu, Y., Dao, W., Gao, R., Fan, X., Yang, R., & Miao, Y. (2026) · Animals · doi:10.3390/ani16050776 · Cited by 1 · see citing works

Genetic Diversity and Selection Signatures in Economically Important Traits of Ethiopian Indigenous Cattle Breed as a Base for Dairy Cattle Genetic Improvement: A Review

Tesfa, A., Alemayehu, K., Mebratie, W., Kerisew, B., & Taye, M. (2024) · Agricultural Reviews · doi:10.18805/ag.rf-281 · Cited by 1 · see citing works

Distinct adaptation and ancestral retention signals in African and European indigenous cattle genomes

Gao, J., Ginja, C., Liu, Y., Kantanen, J., Ghanem, N., Kugonza, D. R., Makgahlela, M. L., Okwasiimire, R., Bovenhuis, H., Groenen, M. A. M., et al. (2026) · Communications Biology · doi:10.1038/s42003-026-09856-9 · Cited by 1 · see citing works

Genomic scans for selection signatures revealed candidate genes for adaptation and production traits in the Thai multibreed dairy cattle population

Laodim, T., Koonawootrittriron, S., Elzo, M. A., Suwanasopee, T., Jattawa, D., & Sarakul, M. (2025) · Livestock Science · doi:10.1016/j.livsci.2025.105803

The Contribution of Reproductive Technologies to Dairy Cattle Genetic Improvement in the Amhara Region: Successes and Challenges in Research and Development Efforts

Tesfa, A., Kassa, B., Taye, M., Alkader, A., Aychilie, D., Zegeye, Z. B., Demeke, T., & Lakew, M. (2026) · Veterinary medicine and science · doi:10.5772/intechopen.1012971

European taurine vs indian indicine cattle: a comparative genomic study reveals regions of differentiation during evolution and selection during crossbreedingPreprint

Muthusamy, P. V., Gupta, P., Upadhyay, N., Mani, R. V., Kaur, M., Bhaskar, B., Pillai, R. R., Kumar, T. S., Tv, A., Kulkurni, S., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.02.05.704058

Signatures of selection underlying adaptation and production performances in tropical Bos indicus cattle: A systematic reviewPreprint

Maharani, D., Sudrajad, P., Bintara, S., Widi, T. S. M., & Worku, M. (2026) · Research Square · doi:10.21203/rs.3.rs-10539299/v1

Precision phenotyping of reproductive events in dairy cattle under heat stress: epidemiological validity and implications for genetic improvement in tropical systems

Safdar, T., Murtaza, N., Arooj, A., Khan, A. R., Salka, K., & Akram, S. (2026) · Tropical Animal Health and Production · doi:10.1007/s11250-026-05298-x

Candidate signatures of positive selection for environmental adaptation in indigenous African cattle: A review

Kambal, S., Tijjani, A., Ibrahim, S. A. E., Ahmed, M. A., Mwacharo, J. M., & Hanotte, O. (2023) · Animal Genetics · doi:10.1111/age.13353 · Cited by 27 · see citing works

The Genome Landscape of Indigenous African Cattle

Kim, J., Hanotte, O., Mwai, O. A., Dessie, T., Bashir, S., Diallo, B., Agaba, M., Kim, K., Kwak, W., Sung, S., et al. (2017) · Genome biology · doi:10.1186/s13059-017-1153-y · Cited by 271 · see citing works

Adaptation of tropical cattle breeds to their environment, in the perspective of climatic change. [P148]

Navès, M., Flori, L., Thévenon, S., & Gauthier, M. J. (2015) · Agritrop (Cirad)

Distinct adaptation and ancestral retention signals in African and European indigenous cattle genomes

Gao, J., Ginja, C., Liu, Y., Kantanen, J., Ghanem, N., Kugonza, D. R., Makgahlela, M. L., Okwasiimire, R., Bovenhuis, H., Groenen, M. A. M., et al. (2026) · Communications Biology · doi:10.1038/s42003-026-09856-9 · Cited by 1 · see citing works

The Genetic Architecture of Climatic Adaptation of Tropical Cattle

Neto, L. R. P., Reverter, A., Prayaga, K. C., Chan, E. K. F., Johnston, D. J., Hawken, R., Fordyce, G., Garcia, J. F., Sonstegard, T. S., Bolormaa, S., et al. (2014) · PLoS ONE · doi:10.1371/journal.pone.0113284 · Cited by 160 · see citing works