The Genomic Landscape of Cattle: Domestication, Dispersal, and Adaptive Evolution
Open accessAbstract
Domestic cattle represent one of the most significant evolutionary successes in the history of human–animal mutualism. This review synthesizes evidence from paleogenomics and modern population genetics, particularly recent pangenome analyses, to reconstruct a comprehensive evolutionary trajectory of cattle. We outline the two domestication events: the emergence of taurine cattle (Bos taurus) in the Fertile Crescent (~10,500 years ago) and zebu cattle (Bos indicus) in the Indus Valley (~8000 years ago). Following domestication, cattle dispersed globally alongside human migration, resulting in a complex genetic mosaic shaped by introgression with wild relatives and extensive admixture between lineages. By integrating data from mitochondrial DNA, Y-chromosome haplotypes, and whole-genome sequencing of modern, ancient, and wild samples, we reconstruct the detailed global dispersal of cattle. Furthermore, we dissect the molecular mechanisms underlying phenotypic diversity, emphasizing how natural selection has driven environmental adaptation, how artificial selection has optimized production traits, and how the emerging bovine pangenome is unveiling “hidden” genetic variations critical for climate resilience and disease resistance. Ultimately, this review summarizes the origin, dispersal, and genomic diversity of cattle, offering vital insights for the conservation of indigenous genetic resources and the advancement of molecular breeding strategies in the face of a changing global climate.
AI snapshot
Written from the paper’s full text.
TL;DR
This review synthesizes archaeological and genomic evidence showing that cattle domestication had dual origins in the Near East and Indus Valley, followed by dispersal, hybridization, and adaptation across continents. It argues that modern cattle are dynamic genomic mosaics and that pangenome/structural-variation analyses are essential for uncovering hidden diversity relevant to breeding and conservation.
Key findings
- Taurine cattle were domesticated from European aurochs in the Fertile Crescent ~10,500 years ago, while zebu cattle were domesticated independently from Indian aurochs in the Indus Valley >8000 years ago; taurine–indicine divergence is estimated at ~201,000–301,200 years ago.
- Modern cattle comprise six autosomal ancestries and show adaptive introgression: banteng, gaur, and yak ancestry contributed 1.13–10.21%, 2.06–9.98%, and 0.05–2.94%, respectively, to East Asian indicine or Tibetan taurine cattle; 7,293 SVs in Tibetan cattle originated from yak introgression.
- Selection and adaptation involve candidate genes for thermal tolerance, parasitic disease resistance, and high-altitude adaptation, including EPAS1, EGLN1, and NOS2 introgressed from yak; DGAT1 K232A and SCD1 A293V affect milk fat and fatty acid composition.
- Pangenome studies reveal hidden diversity: 148.5 Mb of novel sequences in Chinese indicine cattle, 7.5 Mb of non-reference unique insertions and 41 Mb of novel sequences in Indian cattle, and a complex SV upstream of KIT associated with the white-head phenotype.
Methods
- Narrative review with a systematic literature search in PubMed, Web of Science, and Google Scholar, primarily for 2010–2026, using keywords such as “cattle,” “Bos taurus,” “Bos indicus,” “domestication,” “adaptive evolution,” “pangenome,” and “structural variation.”
- Inclusion prioritized high-impact original research, meta-analyses/reviews, and studies using high-density SNP arrays or whole-genome sequencing; pre-2010 archaeological and paleogenomic studies were added for historical context.
- Synthesis covers archaeology, mtDNA, Y-chromosome, autosomal DNA, whole-genome sequencing, pangenome assemblies, and structural-variation analyses; no new primary data were generated.
Limitations
- Stated: SNP–phenotype associations still lack functional validation; ancient DNA evidence remains sparse, especially for southern Chinese indicine cattle formation; no gene with a major effect on cattle temperament has been identified; intensive selection has reduced genetic diversity in indigenous cattle.
- Evident: as a review, it generates no new empirical data; the search strategy is described but lacks PRISMA-style screening counts or formal quality assessment; the high-altitude adaptation section is duplicated in the provided text, and many findings are candidate-gene lists without independent validation.
Model-written summary. Check it against the paper before relying on it.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
155 of 246 cited sources checked · 50 supported · 4 flagged · accuracy not yet measured
- Premisecitation
The autosomal genetic structure of modern cattle is primarily divided into six ancestries: European taurine, East Asian taurine, African taurine, South Asian or Indian indicine, East Asian or Chinese indicine, and African indicine ancestry.
“The autosomal genetic structure of modern cattle is primarily divided into six ancestries (Table 1): European taurine, East Asian taurine, African taurine, South Asian or Indian indicine, East Asian or Chinese indicine, and African indicine ancestry [9,10,31].”
Quote in the paperSubstantial claim3 of 3 sources checked- cites [9] Chen, 2018, Whole-Genome Resequencing Reveals World-Wide Ancestry and Adaptive Introgression Events of Domesticated Cattle in East Asia, Nat. Commun. source
The Results section on autosomal population structure identifies European taurine, East Asian taurine, Chinese indicine, and Indian indicine ancestry, as the claim does. But it reports five ancestral components, not six: the fifth is Eurasian taurine, and African taurine and African indicine are not among the components it identifies. No page number is available in our copy. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [10] Chen, 2023, Global Genetic Diversity, Introgression, and Evolutionary Adaptation of Indicine Cattle Revealed by Whole Genome Sequencing, Nat. Commun. source
- cites [31] Decker, J.E., McKay, S.D., Rolf, M.M., Kim, J., Molina Alcalá, A., Sonstegard, T.S., Hanotte, O., Götherström, A., Seabury, C.M., and Praharani, L. (2014). Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle. PLoS Genet., 10. source
The Abstract identifies three consistently observed major groups: Asian indicine, Eurasian taurine, and African taurine—not six primary ancestries. The Results and Discussion (‘Worldwide patterns’; page unavailable) likewise presents a three-population ancestry model. Although the paper examines finer geographic structure, it does not present the cited six-way division as the primary structure. (LLM, conf=0.85)
Checked by a reasoning model — may be wrong.
Experimental — accuracy not yet measured
- Premisecitation
Over 8000 years ago, Indian aurochs in the Indus Valley were domesticated into zebu cattle.
“Separately, over 8000 years ago, in the Indus Valley of South Asia, Indian aurochs (Bos primigenius namadicus) were domesticated into zebu cattle (Bos indicus) [6].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [6] Chen, 2010, Zebu Cattle Are an Exclusive Legacy of the South Asia Neolithic, Mol. Biol. Evol. source
The Introduction identifies Bos primigenius namadicus as the purported ancestor of zebu cattle, and the discussion following Fig. 2 identifies the Indus Valley as the most likely primary center of domestication. It dates early domestication there to approximately 8,000 years before present, not definitively to more than 8,000 years ago; the citing sentence also presents the proposed origin as certain. (LLM, conf=0.84)
Experimental — accuracy not yet measured
- Premisecitation
Archaeological sites in the Middle Euphrates valley (10,800-10,300 years ago), the Tigris basin (~10,200 years ago), and the Northern Jordan Valley (during the 8th millennium) exhibit the initial morphological indicators of domestication, such as reduction in sexual dimorphism and body size.
“Sites in the Middle Euphrates valley (10,800–10,300 years ago), the Tigris basin (~10,200 years ago), and the Northern Jordan Valley (during the 8th millennium) exhibit the initial morphological indicators of domestication, such as reduction in sexual dimorphism and body size [22,23,24].”
Quote in the paperSubstantial claim1 of 3 sources checked- cites [22] Vigne, 2011, The Origins of Animal Domestication and Husbandry: A Major Change in the History of Humanity and the Biosphere, C R. Biol. source
- cites [23] Zhang, 2020, Evolution and Domestication of the Bovini Species, Anim. Genet. source
- cites [24] Marom, N., and Bar-Oz, G. (2013). The Prey Pathway: A Regional History of Cattle (Bos taurus) and Pig (Sus scrofa) Domestication in the Northern Jordan Valley, Israel. PLoS ONE, 8. source
- Premisecitation
During the Holocene, the North Asian wild populations declined and ultimately became extinct in Northeast China as a result of climate deterioration and intensified human activity.
“During the Holocene, the North Asian wild populations declined and ultimately became extinct in Northeast China as a result of climate deterioration and intensified human activity [19].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [19] Zhu, Y., Hou, X., Zhao, J., Xiao, B., Song, S., Zou, X., Liu, S., Hofreiter, M., and Lai, X. (2025). Revisiting Aurochs Haplogroup C: Paleogenomic Perspectives from Northeastern China. Genes, 16. source
- Premisecitation
Aurochs have been classified into four distinct ancestries by both autosomal and mtDNA variation: European, South Asian, Southwest Asian or North African, and North Asian populations.
“Aurochs have been classified into four distinct ancestries by both autosomal and mtDNA variation: European, South Asian, Southwest Asian or North African, and North Asian populations [12].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [12] Rossi, 2024, The Genomic Natural History of the Aurochs, Nature source
- Premisecitation
Domestic cattle possess at least two distinct centers of domestication.
“Domestic cattle possess at least two distinct centers of domestication (Figure 1).”
Quote in the paperSubstantial claim1 of 2 sources checked - Premisecitation
During the Last Glacial Maximum, European aurochs contracted into southern Europe, specifically the Iberian, Italian, and Balkan peninsulas.
“During the Last Glacial Maximum, European aurochs contracted into southern Europe, specifically the Iberian, Italian, and Balkan peninsulas.”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [12] Rossi, 2024, The Genomic Natural History of the Aurochs, Nature source
- cites [13] Mona, S., Catalano, G., Lari, M., Larson, G., Boscato, P., Casoli, A., Sineo, L., Di Patti, C., Pecchioli, E., and Caramelli, D. (2010). Population Dynamic of the Extinct European Aurochs: Genetic Evidence of a North-South Differentiation Pattern and No Evidence of Post-Glacial Expansion. BMC Evol. Biol., 10. source
The Discussion (page not specified) suggests Italy may have been a southern refugium during the glaciations and says an Iberian refugium cannot be ruled out. It does not establish a Last Glacial Maximum contraction into the three named peninsulas or identify the Balkans as an aurochs refugium. The Conclusion instead attributes post-glacial recolonization of northern and central Europe to eastern immigrants. (LLM, conf=0.87)
Experimental — accuracy not yet measured
- Premisecitation
Molecular divergence of taurine and indicine lineages occurred approximately 201,000-301,200 years ago.
“Molecular divergence of taurine and indicine (also referred to as zebu) lineages is estimated to have occurred at approximately 201,000–301,200 years ago [5,7,8,9,10], strongly supporting the two independent domestication events involving distinct aurochs subspecies.”
Quote in the paperSubstantial claim2 of 5 sources checked- cites [5] Achilli, 2008, Mitochondrial Genomes of Extinct Aurochs Survive in Domestic Cattle, Curr. Biol. source
- cites [7] Singh, 2025, Mitogenome Diversity and Evolution of Bos indicus Cattle in India, Gene source
- cites [8] Loftus, 1994, Evidence for Two Independent Domestications of Cattle, Proc. Natl. Acad. Sci. USA source
- cites [9] Chen, 2018, Whole-Genome Resequencing Reveals World-Wide Ancestry and Adaptive Introgression Events of Domesticated Cattle in East Asia, Nat. Commun. source
The Results section, “Demographic history of East Asian cattle” (page unavailable), estimates taurine–indicine divergence at approximately 201–213 thousand years ago and reports an earlier molecular-divergence range of 117–332 thousand years. It supports divergence around 201 thousand years ago, but not the claimed upper bound of 301,200 years. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [10] Chen, 2023, Global Genetic Diversity, Introgression, and Evolutionary Adaptation of Indicine Cattle Revealed by Whole Genome Sequencing, Nat. Commun. source
The Results section, “Demographic history of indicine cattle” (page not available), estimates that indicine groups diverged from taurine groups 251,500–301,200 years ago. This supports the divergence claim and its upper bound, but not the cited lower bound of 201,000 years. (LLM, conf=0.90)
Experimental — accuracy not yet measured
- Interpretationreasoning
The molecular divergence estimate strongly supports two independent domestication events involving distinct aurochs subspecies.
“strongly supporting the two independent domestication events involving distinct aurochs subspecies.”
Quote in the paperSubstantial claim2 of 5 sources checked- cites [5] Achilli, 2008, Mitochondrial Genomes of Extinct Aurochs Survive in Domestic Cattle, Curr. Biol. source
- cites [7] Singh, 2025, Mitogenome Diversity and Evolution of Bos indicus Cattle in India, Gene source
- cites [8] Loftus, 1994, Evidence for Two Independent Domestications of Cattle, Proc. Natl. Acad. Sci. USA source
- cites [9] Chen, 2018, Whole-Genome Resequencing Reveals World-Wide Ancestry and Adaptive Introgression Events of Domesticated Cattle in East Asia, Nat. Commun. source
The Results (Demographic history of East Asian cattle; page unavailable) estimate taurine–indicine divergence at 201–213 kya, and the Introduction describes two primary domestication centres. But the paper does not say that this molecular estimate strongly establishes independent domestication from distinct aurochs subspecies; its Discussion treats a possible contribution from differentiated wild indicine populations as hypothetical. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [10] Chen, 2023, Global Genetic Diversity, Introgression, and Evolutionary Adaptation of Indicine Cattle Revealed by Whole Genome Sequencing, Nat. Commun. source
The Results section, “Demographic history of indicine cattle” (page unavailable), estimates that indicine groups diverged from taurine groups 251.5–301.2 thousand years ago. The Introduction describes separate taurine and indicine domestications, but identifies the resulting cattle—not their aurochs ancestors—as distinct subspecies. It does not explicitly conclude that the divergence estimate strongly supports domestication of distinct aurochs subspecies. (LLM, conf=0.85)
Experimental — accuracy not yet measured
- Premisecitation
The domestication of cattle began with the capture of a limited number of individuals from wild aurochs populations in the Near East.
“The domestication of cattle began with the capture of a limited number of individuals from wild aurochs populations in the Near East [21].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [21] Bollongino, 2012, Modern Taurine Cattle Descended from Small Number of Near-Eastern Founders, Mol. Biol. Evol. source
- Premisecitation
Ancient DNA from fossils in Northeast China has revealed a unique C haplogroup associated with East Asian aurochs.
“In East Asia, ancient DNA from fossils in Northeast China has revealed a unique C haplogroup associated with East Asian aurochs [17,18,19].”
Quote in the paperNot a substantial claim1 of 3 sources checked- cites [17] Cai, 2018, Ancient DNA Reveals Evidence of Abundant Aurochs (Bos Primigenius) in Neolithic Northeast China, J. Archaeol. Sci. source
- cites [18] Hou, 2024, Evolution and Legacy of East Asian Aurochs, Sci. Bull. source
- cites [19] Zhu, Y., Hou, X., Zhao, J., Xiao, B., Song, S., Zou, X., Liu, S., Hofreiter, M., and Lai, X. (2025). Revisiting Aurochs Haplogroup C: Paleogenomic Perspectives from Northeastern China. Genes, 16. source
The Introduction reports that haplogroup C was described from a Late Pleistocene auroch specimen in Northeastern China, and the Discussion says the study’s specimens belong to it. But the Introduction also reports haplogroup C in Russia and Kazakhstan, so the source does not support ‘unique’ if it means exclusive to East Asian aurochs. (LLM, conf=0.85)
Experimental — accuracy not yet measured
- Premisecitation
Phylogenetic patterns inferred from insertion and deletion markers are congruent with those obtained from SNPs.
“Phylogenetic patterns inferred from insertion and deletion markers are congruent with those obtained from SNPs [32].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [32] Zhou, 2022, Assembly of a Pangenome for Global Cattle Reveals Missing Sequences and Novel Structural Variations, Providing New Insights into Their Diversity and Evolutionary History, Genome Res. source
The Results section, “Population structure derived from deletions in cattle” (page unavailable), says deletion-based analyses mirrored SNP-based population structure and produced essentially the same ancestral components. The claim extends this comparison to insertion markers and phylogenetic patterns; the cited passage establishes neither an insertion-marker comparison nor a comparison of phylogenetic trees. (LLM, conf=0.85)
Experimental — accuracy not yet measured
- Premisecitation
During the Late Bronze Age (~4200 years ago), widespread drought led to rapid and extensive genetic introgression of Indian cattle into domesticated cattle populations in the Southern Levant.
“During the Late Bronze Age (~4200 years ago), widespread drought led to rapid and extensive genetic introgression of Indian cattle into domesticated cattle populations in the Southern Levant [28].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [28] Verdugo, 2019, Ancient Cattle Genomics, Origins, and Rapid Turnover in the Fertile Crescent, Science source
The paper reports rapid, widespread Bronze Age introgression of Indus Valley zebu into Near Eastern cattle, including animals in the southern Levant. It says the influx was *likely stimulated* by a widespread drought around 4.2 ka; it does not establish that drought caused it, as the claim's “led to” implies. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Premisecitation
Over 5000 years ago, domesticated zebu cattle had become widely distributed across the Indus and Ganges basins.
“Over 5000 years ago, domesticated zebu cattle had become widely distributed across the Indus and Ganges basins [6].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [6] Chen, 2010, Zebu Cattle Are an Exclusive Legacy of the South Asia Neolithic, Mol. Biol. Evol. source
The Introduction reports that domestic zebu were widespread in the Indus Valley around 5,000 years before present. But it dates their presence in the Ganges region to around 4,000 years before present, so it does not support the claim that they were widely distributed across both basins over 5,000 years ago. (LLM, conf=0.90)
Experimental — accuracy not yet measured
- Premisecitation
Samples from the Indus Valley show the highest diversity of the I1 haplogroup, surpassing that of southern India and the Ganges region.
“On a finer geographic scale, samples from the Indus Valley show the highest diversity of the I1 haplogroup, surpassing that of southern India and the Ganges region [6].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [6] Chen, 2010, Zebu Cattle Are an Exclusive Legacy of the South Asia Neolithic, Mol. Biol. Evol. source
- Premisecitation
Modern Indian cattle maintain a higher frequency of Y-chromosome indicine haplogroup compared to cattle in other regions.
“Modern Indian cattle maintain a higher frequency of Y-chromosome indicine haplogroup compared to cattle in other regions [35].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [35] Ganguly, 2020, Y-Chromosome Genetic Diversity of Bos indicus Cattle in Close Proximity to the Centre of Domestication, Sci. Rep. source
The Discussion ('Finding new haplotypes in indicine cattle'; page not available) says that all haplotypes sampled from Indian Bos indicus breeds belonged to the Y3 haplogroup. It does not establish that this haplogroup is more frequent in Indian cattle than in cattle from other regions; its regional comparison concerns haplotype diversity, not haplogroup frequency. (LLM, conf=0.84)
Experimental — accuracy not yet measured
- Premisecitation
In southern European populations, such as Italian cattle, small amounts of mitochondrial Q and R haplogroups are present.
“In southern European populations, such as Italian cattle, small amounts of mitochondrial Q and R haplogroups are present [39,40].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [39] Bonfiglio, S., Achilli, A., Olivieri, A., Negrini, R., Colli, L., Liotta, L., Ajmone-Marsan, P., Torroni, A., and Ferretti, L. (2010). The Enigmatic Origin of Bovine mtDNA Haplogroup R: Sporadic Interbreeding or an Independent Event of Bos Primigenius Domestication in Italy?. PLoS ONE, 5. source
- cites [40] Achilli, A., Bonfiglio, S., Olivieri, A., Malusà, A., Pala, M., Hooshiar Kashani, B., Perego, U.A., Ajmone-Marsan, P., Liotta, L., and Semino, O. (2009). The Multifaceted Origin of Taurine Cattle Reflected by the Mitochondrial Genome. PLoS ONE, 4. source
- Premisecitation
Studies based on Y-chromosome microsatellites or SNP markers classify modern cattle paternal origins into taurine Y1, Y2 (Y2a and Y2b), and indicine Y3 (Y3a and Y3b) haplogroups.
“Studies based on Y-chromosome microsatellites or SNP markers classify modern cattle paternal origins into taurine Y1, Y2 (Y2a and Y2b), and indicine Y3 (Y3a and Y3b) haplogroups [9,10].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [9] Chen, 2018, Whole-Genome Resequencing Reveals World-Wide Ancestry and Adaptive Introgression Events of Domesticated Cattle in East Asia, Nat. Commun. source
- cites [10] Chen, 2023, Global Genetic Diversity, Introgression, and Evolutionary Adaptation of Indicine Cattle Revealed by Whole Genome Sequencing, Nat. Commun. source
- Premisecitation
Indochinese and Chinese cattle populations are dominant in the zebu ancestry, specifically Y-chromosomal sub-haplogroup Y3a and the maternal sub-haplogroup I1a.
“Indochinese and Chinese cattle populations are dominant in the zebu ancestry, specifically Y-chromosomal sub-haplogroup Y3a and the maternal sub-haplogroup I1a [10,60,61].”
Quote in the paperNot a substantial claim3 of 3 sources checked- cites [10] Chen, 2023, Global Genetic Diversity, Introgression, and Evolutionary Adaptation of Indicine Cattle Revealed by Whole Genome Sequencing, Nat. Commun. source
The Results section (‘The Southeast Asian coast was the main entry point of indicine cattle into East Asia’) says Y-chromosomal Y3A3 and maternal I1a were found exclusively in Indochinese and Chinese cattle. The claim names Y3A instead of the more specific Y3A3; the paper reports Y3A as predominant in East Asian indicine and North-Central Chinese cattle, not as the paired sub-haplogroup in that finding. It also does not say that Indochinese and Chinese populations dominate zebu ancestry overall. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [60] Sudrajad, P., Subiharta, S., Adinata, Y., Lathifah, A., Lee, J.H., Lenstra, J.A., and Lee, S.H. (2020). An Insight into the Evolutionary History of Indonesian Cattle Assessed by Whole Genome Data Analysis. PLoS ONE, 15. source
The Results (Population ancestries and migration events; page unavailable) describe Thai cattle as part of an indicine group and report Bos indicus introgression into Chinese cattle. They do not establish that zebu ancestry is dominant in Indochinese and Chinese populations, and our copy does not report the Y3a or I1a sub-haplogroups. (LLM, conf=0.83)
Experimental — accuracy not yet measured - cites [61] Wangkumhang, 2015, Genetic Analysis of Thai Cattle Reveals a Southeast Asian Indicine Ancestry, PeerJ source
The Results and Discussion (page unavailable) report a major indicine ancestral component shared by Thai and other Southeast Asian cattle. They do not establish that Indochinese and Chinese populations dominate zebu ancestry, or identify Y-chromosomal Y3a or maternal I1a; the paper’s analysis uses genome-wide SNPs rather than those haplogroups. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Premisecitation
African cattle (mtDNA T1, mixed with zebu lineage) were once introduced to the European Mediterranean region.
“As previously mentioned, African cattle (mtDNA T1, mixed with zebu lineage) were once introduced to the European Mediterranean region [26,52,53].”
Quote in the paperNot a substantial claim2 of 3 sources checked- cites [26] Caramelli, 2006, The Origin of European Cattle: Evidence from Modern and Ancient DNA, Proc. Natl. Acad. Sci. USA source
In “Testing the Hypothesis of an African Cattle Contribution in Southern European Breeds” (page not specified), the paper finds T1 in Mediterranean European breeds and says its distribution suggests cattle were introduced from North Africa. The Abstract (page not specified) separately mentions a later male introduction of zebu into Africa, but does not establish that the T1-bearing cattle introduced into Europe were mixed with zebu lineage. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [52] Dunner, 2008, Ancestral Matrilineages and Mitochondrial DNA Diversity of the Lidia Cattle Breed, Anim. Genet. source
- cites [53] Upadhyay, 2019, Deciphering the Patterns of Genetic Admixture and Diversity in Southern European Cattle Using Genome-Wide SNPs, Evol. Appl. source
The Introduction and Discussion (pages not provided) report African taurine ancestry in Iberian cattle and both African taurine and zebu-like ancestry in some Italian and Balkan breeds. They do not identify an mtDNA T1 lineage or establish that African cattle already mixed with zebu were introduced into the Mediterranean region; the origin of the dual ancestry remains uncertain. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Premisecitation
In the 15th century, southern European herds carrying African indicine ancestry were introduced to the Americas.
“Subsequently, in the 15th century, southern European herds carrying African indicine ancestry were introduced to the Americas [52,53].”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [52] Dunner, 2008, Ancestral Matrilineages and Mitochondrial DNA Diversity of the Lidia Cattle Breed, Anim. Genet. source
- cites [53] Upadhyay, 2019, Deciphering the Patterns of Genetic Admixture and Diversity in Southern European Cattle Using Genome-Wide SNPs, Evol. Appl. source
The Results section (page unavailable) finds both African and indicine ancestry in several Balkan and Italian cattle breeds, supporting the ancestry portion of the claim. It does not say those herds were introduced to the Americas in the 15th century, and it describes African and indicine ancestry as distinct components rather than establishing an African origin for the indicine component. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Premisecitation
The rapid adaptation of East Asian cattle to hot and humid environments and high-altitude environments was promoted by localized introgression from other bovine species.
“The rapid adaptation of East Asian cattle to hot and humid environments and high-altitude environments was promoted by localized introgression from other bovine species [65,66].”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [65] Gao, 2017, Species Composition and Environmental Adaptation of Indigenous Chinese Cattle, Sci. Rep. source
The Discussion (page unavailable) reports banteng and gayal introgression in southern Chinese cattle and yak influence near Tibet, and suggests that ancestry from these species may contribute to adaptation. It does not establish that introgression promoted rapid adaptation specifically to hot, humid or high-altitude environments; that causal claim is stronger than the paper's proposal. (LLM, conf=0.87)
Experimental — accuracy not yet measured - cites [66] Guan, X., Xiang, W., Qu, K., Ahmed, Z., Liu, J., Cai, M., Zhang, J., Chen, N., Lei, C., and Huang, B. (2025). Whole Genome Insights into Genetic Diversity, Introgression, and Adaptation of Yunnan Indigenous Cattle of Southwestern China. BMC Genom., 26. source
The Discussion (page unavailable) says that introgressed regions from Yunnan gayal may have helped Yunnan cattle adapt to humid tropical conditions and disperse rapidly. The paper does not establish that such introgression promoted high-altitude adaptation, and its finding concerns Yunnan cattle rather than East Asian cattle generally. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Premisecitation
Genes related to cold/heat stress response (DDX23, PPT1) and thermogenesis (GRIA4, HBS1) were found to be under selection.
“Additionally, genes related to cold/heat stress response (DDX23, PPT1) and thermogenesis (GRIA4, HBS1) were found to be under selection [90].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [90] Igoshin, A., Yudin, N., Aitnazarov, R., Yurchenko, A.A., and Larkin, D.M. (2021). Whole-Genome Resequencing Points to Candidate DNA Loci Affecting Body Temperature under Cold Stress in Siberian Cattle Populations. Life, 11. source
The Discussion (page unavailable) identifies DDX23 and GRIA4 among top-ranked candidate SNP results and links THBS1—not HBS1—to a pathway involved in adaptive thermogenesis. It does not identify GRIA4 as a thermogenesis gene or establish that these genes were under selection; its evidence is a ranking of candidate variants associated with temperature maintenance. The retrieved non-abstract passages do not establish the stated cold/heat-stress role for PPT1. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Premisecitation
In Yanbian cattle of northeastern China, genes related to cold stress (CORT), hair follicle and hair growth (FGF5), and lipid metabolism (CD36) were selected.
“In Yanbian cattle of northeastern China, genes related to cold stress (CORT), hair follicle and hair growth (FGF5), and lipid metabolism (CD36) were selected [93].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [93] Shen, J., Hanif, Q., Cao, Y., Yu, Y., Lei, C., Zhang, G., and Zhao, Y. (2020). Whole Genome Scan and Selection Signatures for Climate Adaption in Yanbian Cattle. Front. Genet., 11. source
- Premisecitation
In another study, genes related to adipose tissue thermogenesis (EGR1, STING1), cold stress (DNAJC18, which is also under selection in African zebu cattle [99]), and oxidative phosphorylation (UQCR11) were identified as candidate genes in northern Chinese cattle.
“In another study, genes related to adipose tissue thermogenesis (EGR1, STING1), cold stress (DNAJC18, which is also under selection in African zebu cattle [99]), and oxidative phosphorylation (UQCR11) were identified as candidate genes in northern Chinese cattle [94].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [94] Huang, 2023, Signatures of Selection in Indigenous Chinese Cattle Genomes Reveal Adaptive Genes and Genetic Variations to Cold Climate, J. Anim. Sci. source
Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
- Premisecitation
Genes involved in heat tolerance have been identified in Indian and African indicine cattle populations, such as heat shock protein genes (HSPA1B, HSPA12A, DNAJC18 and DNAJC8), GRXCR1, FKBP4, HSPA1L, IL6, and HELB.
“Genes involved in heat tolerance have been identified in Indian and African indicine cattle populations, such as heat shock protein genes (HSPA1B, HSPA12A, DNAJC18 and DNAJC8), GRXCR1, FKBP4, HSPA1L, IL6, and HELB [81,100,112,113].”
Quote in the paperSubstantial claim2 of 4 sources checked- cites [81] Taye, 2018, Exploring the Genomes of East African Indicine Cattle Breeds Reveals Signature of Selection for Tropical Environmental Adaptation Traits, Cogent Food Agric. source
- cites [100] Saravanan, 2021, Genomic Scans for Selection Signatures Revealed Candidate Genes for Adaptation and Production Traits in a Variety of Cattle Breeds, Genomics source
- cites [112] Cardoso, 2020, Selection Signatures in Tropical Cattle Are Enriched for Promoter and Coding Regions and Reveal Missense Mutations in the Damage Response Gene HELB, Genet. Sel. Evol. source
The Results section (page unavailable) identifies HELB mutations in Asian indicine cattle and reports their presence in African indicine cattle. It proposes that these mutations could help cattle cope with high temperatures, but does not establish HELB as a heat-tolerance gene. The other genes in the citing sentence are not supported by the passages from this source. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [113] Maiorano, 2022, Signatures of Selection in Nelore Cattle Revealed by Whole-Genome Sequencing Data, Genomics source
Section 3.5 identifies HELB in a selection region in Nelore cattle and reports a proposed role for it in adaptation to high temperatures in Asian indicine tropical cattle. The passages do not substantiate the other listed genes or findings in African indicine populations. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Rests on an assumption: The heat shock protein (HSP) family protects cells from thermal damage and prevents protein denaturation.
- Premisecitation
DDX23, a heat shock gene, showed up-regulation in Sahiwal peripheral blood mononuclear cells from tropical regions relative to Ladakhi cattle from hypobaric hypoxia regions.
“DDX23, a heat shock gene, showed up-regulation in Sahiwal peripheral blood mononuclear cells from tropical regions relative to Ladakhi cattle from hypobaric hypoxia regions [108,109].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [108] Verma, 2018, Transcriptome Analysis of Circulating PBMCs to Understand Mechanism of High Altitude Adaptation in Native Cattle of Ladakh Region, Sci. Rep. source
The Results section reports that DDX23 was expressed 2.45-fold higher in Sahiwal PBMCs, supporting the direction and comparison. It lists DDX23 among DEAD-box genes, separately from heat-shock-family genes; the Discussion associates the DEAD-box genes with RNA metabolism. The source therefore does not support calling DDX23 a heat shock gene. (LLM, conf=0.91)
Experimental — accuracy not yet measured - cites [109] Pitt, 2019, Demography and Rapid Local Adaptation Shape Creole Cattle Genome Diversity in the Tropics, Evol. Appl. source
The Results and Discussion section reports genomic selection signals related to heat tolerance in Creole cattle, not gene-expression measurements in Sahiwal or Ladakhi blood cells. Searches for DDX23, peripheral blood mononuclear cells, and hypobaric hypoxia found no passage addressing the claimed comparison. Page numbers were unavailable in our copy. (LLM, conf=0.75)
Experimental — accuracy not yet measured
- Premisecitation
This historical introduction resulted in direct African genetic contributions to Creole cattle from Brazil and Colombia.
“This historical introduction resulted in direct African genetic contributions to Creole cattle from Brazil and Colombia [72].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [72] Ginja, 2019, The Genetic Ancestry of American Creole Cattle Inferred from Uniparental and Autosomal Genetic Markers, Sci. Rep. source
The Abstract reports T1c lineages in Creole cattle from Brazil and Colombia as evidence lending support to direct African influence, and the Conclusions affirm a direct African contribution to Creole cattle generally. The Discussion, however, describes the proposed historical route of introduction as a possibility, so the claim states that route’s causal role more definitively than the paper does. No page numbers are available in our copy. (LLM, conf=0.82)
Experimental — accuracy not yet measured
- Premisecitation
In the Siberian region where winter temperatures drop to −50 °C, genome scanning has identified candidate genes potentially associated with cold adaptation in Russian cattle breeds: RETREG1, AQP5, TNKS, ARRDC3, HDAC3, and RAD50.
“In the Siberian region where winter temperatures drop to −50 °C, genome scanning has identified candidate genes potentially associated with cold adaptation in Russian cattle breeds. These genes include those involved in temperature sensation (RETREG1), cold-regulated water channels (AQP5), adipose tissue and thermogenesis regulation (TNKS, ARRDC3, HDAC3), and DNA repair (RAD50) [92].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [92] Yurchenko, 2018, Scans for Signatures of Selection in Russian Cattle Breed Genomes Reveal New Candidate Genes for Environmental Adaptation and Acclimation, Sci. Rep. source
The Introduction (page unavailable) says Yakut cattle can overwinter at −50 °C, and the Results identify selection signals near all six named genes. The Results link RETREG1, AQP5, HDAC3, and ARRDC3 to functions relevant to cold adaptation, but describe TNKS in relation to feed availability and RAD50 in relation to antiviral protection—not specifically cold adaptation. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Premisecitation
A GWAS analysis in Siberian cold-tolerant breeds (Hereford and Kazakh Whiteheaded) identified candidate genes MSANTD4 and GRIA4, related to cold shock response and thermoregulation, respectively.
“A GWAS analysis in Siberian cold-tolerant breeds (Hereford and Kazakh Whiteheaded) identified candidate genes MSANTD4 and GRIA4, related to cold shock response and thermoregulation, respectively [91].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [91] Igoshin, A.V., Yurchenko, A.A., Belonogova, N.M., Petrovsky, D.V., Aitnazarov, R.B., Soloshenko, V.A., Yudin, N.S., and Larkin, D.M. (2019). Genome-Wide Association Study and Scan for Signatures of Selection Point to Candidate Genes for Body Temperature Maintenance under the Cold Stress in Siberian Cattle Populations. BMC Genet., 20. source
- Premisecitation
HBS1, which is associated with the GO term "regulation of lipid transport", was found to be downregulated in Yakutian cattle.
“HBS1, which is associated with the GO term “regulation of lipid transport”, was found to be downregulated in Yakutian cattle [107].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [107] Pokharel, 2019, Whole Blood Transcriptome Analysis Reveals Footprints of Cattle Adaptation to Sub-Arctic Conditions, Anim. Genet. source
In Results and discussion, under “Uniquely differentially expressed genes” (page unavailable), the paper associates the GO term “regulation of lipid transport” with genes downregulated in Yakutian cattle. It names THBS1, not HBS1, among those genes; the specific gene attribution in the claim is therefore unsupported. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Premisecitation
In Apeijiaza and Shigatse Humped cattle, genes associated with cardiovascular function (NOXA1, RUVBL1, SLC4A3) underwent intense selection.
“In Apeijiaza cattle and Shigatse Humped cattle, both of which carry indicine ancestry, genes associated with cardiovascular function (NOXA1, RUVBL1, SLC4A3) underwent intense selection [95].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [95] Zhang, Y., Hu, Y., Wang, X., Jiang, Q., Zhao, H., Wang, J., Ju, Z., Yang, L., Gao, Y., and Wei, X. (2019). Population Structure, and Selection Signatures Underlying High-Altitude Adaptation Inferred From Genome-Wide Copy Number Variations in Chinese Indigenous Cattle. Front. Genet., 10. source
- Premisecitation
A meta-analysis identified the stress-responsive gene SST and members of the Kelch family as key regulators of cattle temperament.
“Complementing this, a meta-analysis by Ruiz et al. [130] identified the stress-responsive gene SST and members of the synaptic function-related Kelch family as key regulators of cattle temperament.”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [130] Ruiz-De-La-Cruz, G., Welsh, T.H., Randel, R.D., and Sifuentes-Rincón, A.M. (2024). A Comprehensive Systematic Review Coupled with an Interacting Network Analysis Identified Candidate Genes and Biological Pathways Related to Bovine Temperament. Genes, 15. source
The Abstract identifies SST and Kelch-family members as the main genes found through a systematic review and interaction-network analysis. The Discussion links SST to stress response and Kelch-family members to synaptic responses. But the Conclusions call them potential candidate genes, not established key regulators, and the paper describes a systematic review rather than a meta-analysis. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Premisecitation
Genes associated with heat stress response (DNAJC3, HSPA1A) and inflammatory response (CD53, ZBTB12, AHCYL2) were under selection in Hainan cattle.
“Genes associated with heat stress response (DNAJC3, HSPA1A) and inflammatory response (CD53, ZBTB12, AHCYL2) were under selection in Hainan cattle [102].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [102] Wang, L., Yan, X., Wu, H., Wang, F., Zhong, Z., Zheng, G., Xiao, Q., Wu, K., and Na, W. (2024). Selection Signal Analysis Reveals Hainan Yellow Cattle Are Being Selectively Bred for Heat Tolerance. Animals, 14. source
- Rests on an assumption: The heat shock protein (HSP) family protects cells from thermal damage and prevents protein denaturation.
- Premisecitation
A 108 bp insertion in SPN generates an additional 36-amino-acid repeat sequence within the extracellular domain of CD43.
“For example, a 108 bp insertion (INS) in SPN generates an additional 36-amino-acid repeat sequence within the extracellular domain of CD43 [101].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [101] Xia, 2023, Structural Variation and Introgression from Wild Populations in East Asian Cattle Genomes Confer Adaptation to Local Environment, Genome Biol. source
- Premisecitation
Keratin genes KRT5 and KRT14 are highly expressed in cattle populations exhibiting high tick tolerance.
“Notably, the keratin genes KRT5 and KRT14 are highly expressed in cattle populations exhibiting high tick tolerance [119].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [119] Kongsuwan, 2010, Activation of Several Key Components of the Epidermal Differentiation Pathway in Cattle Following Infestation with the Cattle Tick, Rhipicephalus (Boophilus) Microplus, Int. J. Parasitol. source
- Premisecitation
In the N'Dama breed, HCRTR1 and anemia-related genes were found to be under strong selection.
“In the N’Dama breed, known for its trypanotolerance, the HCRTR1 gene (encoding hypocretin receptor 1) and anemia-related genes (SLC40A1, STOM, SBDS, EPB42, RPS26) were found to be under strong selection [82].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [82] Kim, 2017, The Genome Landscape of Indigenous African Cattle, Genome Biol. source
- Premisecitation
Compared with low-altitude breeds such as Angus, strong selection signals were identified in ANGPT1 and PPARGC1A in high-altitude cattle.
“Compared with low-altitude breeds such as Angus, Wu et al. [96] identified strong selection signals in ANGPT1 and PPARGC1A, two genes functionally related to hypoxia adaptation.”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [96] Wu, X., Pei, J., Xiong, L., Ge, Q., Bao, P., Liang, C., Yan, P., and Guo, X. (2025). Genome-Wide Scan for Selection Signatures Reveals Novel Insights into the Adaptive Capacity Characteristics in Three Chinese Cattle Breeds. BMC Genom., 26. source
- Interpretationcitation
The dual capacity to control both parasitaemia and the anemia resulting from the innate immune response is key to trypanotolerance.
“These findings support the hypothesis that the dual capacity to control both parasitaemia and the anemia resulting from the innate immune response is key to trypanotolerance [123].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [123] McHugo, G.P., Ward, J.A., Browne, J.A., O’Gorman, G.M., Meade, K.G., Hill, E.W., Hall, T.J., and MacHugh, D.E. (2025). Functional Genomics of Trypanotolerant and Trypanosusceptible Cattle Infected with Trypanosoma Congolense across Multiple Time Points and Tissues. PLoS Negl. Trop. Dis., 19. source
- Premisecitation
In Sheko breed, 15 genes related to anemia, immune tolerance, and neurological dysfunction showed signatures of selection.
“In Sheko, another trypanotolerant breed, 15 genes related to anemia, immune tolerance, and neurological dysfunction (MIGA1, CDAN1, HSPA9, PCSK6, ERN1, CAPG) showed signatures of selection [104].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [104] Mekonnen, Y.A., Gültas, M., Effa, K., Hanotte, O., and Schmitt, A.O. (2019). Identification of Candidate Signature Genes and Key Regulators Associated With Trypanotolerance in the Sheko Breed. Front. Genet., 10. source
- Premisecitation
In another Indian breed, Tharparkar, a SNP (g.149G > T) in HSP70 was associated with thermoregulatory ability under hot conditions.
“In another Indian breed, Tharparkar, a SNP (g.149G > T) in HSP70 was associated with thermoregulatory ability under hot conditions [116].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [116] Bhat, 2016, Effect of Heat Shock Protein 70 Polymorphism on Thermotolerance in Tharparkar Cattle, Vet. World source
- Rests on an assumption: The heat shock protein (HSP) family protects cells from thermal damage and prevents protein denaturation.
- Premisecitation
In dual-purpose Simmental cattle, four candidate genes (ZMAT4, USH2A, ADAMTS7, TBC1D2B) have been linked to milking response.
“In dual-purpose Simmental cattle, four candidate genes have been linked to milking response: ZMAT4 (neural development), USH2A, ADAMTS7, and TBC1D2B (stress response) [129].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [129] Mincu-Iorga, M., Mizeranschi, A.E., Gavojdian, D., Nicolae, I., Kusza, S., and Ilie, D.E. (2025). Detection of Genetic Variants Associated with Behavioural Response During Milking in Simmental Dual-Purpose Cows. Animals, 15. source
- Premisecitation
Individuals displaying frequent repelling behavior are bitten by fewer flies.
“Studies suggest that individuals displaying frequent repelling behavior are bitten by fewer flies [122].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [122] Hart, 2018, How Mammals Stay Healthy in Nature: The Evolution of Behaviours to Avoid Parasites and Pathogens, Philos. Trans. R. Soc. Lond. B Biol. Sci. source
- Premisecitation
Compared with commercial taurine cattle, the superoxide dismutase gene SOD1 and prolactin releasing hormone gene PRLH were under selection in African indicine cattle populations.
“Compared with commercial taurine cattle, the superoxide dismutase gene SOD1 and prolactin releasing hormone gene PRLH were under selection in African indicine cattle populations [82].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [82] Kim, 2017, The Genome Landscape of Indigenous African Cattle, Genome Biol. source
- Premisecitation
Individuals exhibit increased fly-repelling behavior when biting fly density is high.
“Individuals exhibit increased fly-repelling behavior when biting fly density is high, such as ear twitching, head shaking, and tail swishing [122].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [122] Hart, 2018, How Mammals Stay Healthy in Nature: The Evolution of Behaviours to Avoid Parasites and Pathogens, Philos. Trans. R. Soc. Lond. B Biol. Sci. source
- Premisecitation
Structural variation analyses identified genes involved in erythropoiesis and angiogenesis and energy metabolism in high-altitude cattle.
“Structural variation analyses further identified genes involved in erythropoiesis and angiogenesis (SSH2, VGLL4, PLCB1, HPSE2, HPSE) and energy metabolism (SORD, NDUFB6, SARDH, ADIPOQ) [89].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [89] Xia, 2025, Structural Variations Associated with Adaptation and Coat Color in Qinghai-Tibetan Plateau Cattle, Adv. Sci. source
- Premisecitation
In African cattle, genomic selection signatures have been identified in genes involved in antigen response, keratin formation, light coat color, and sebum secretion.
“In African cattle, genomic selection signatures have been identified in genes involved in antigen response (BoLA, SLC25A48), keratin formation (KRT33A, KRT222, KRT24, KRT25, KRT26, KRT27, TGM1, TGM3), light coat color (MLPH), and sebum secretion (MC5R) [81,82,99,103].”
Quote in the paperSubstantial claim3 of 4 sources checked- cites [81] Taye, 2018, Exploring the Genomes of East African Indicine Cattle Breeds Reveals Signature of Selection for Tropical Environmental Adaptation Traits, Cogent Food Agric. source
- cites [82] Kim, 2017, The Genome Landscape of Indigenous African Cattle, Genome Biol. source
In Results and discussion (page not provided), the paper identifies a selection signal at BoLA, an immunity-related gene, and candidate regions involving coat-color genes in Ankole cattle. It does not identify the cited keratin-formation genes, SLC25A48, MLPH, or MC5R as selection signatures, so it supports only part of the attributed gene list. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [99] Ayalew, W., Xiaoyun, W., Tarekegn, G.M., Tessema, T.S., Chu, M., Liang, C., Naboulsi, R., Van Damme, R., Bongcam-Rudloff, E., and Ping, Y. (2024). Whole-Genome Sequencing of Copy Number Variation Analysis in Ethiopian Cattle Reveals Adaptations to Diverse Environments. BMC Genom., 25. source
The Results (Functional annotations and enrichment analysis; page unavailable) identify BoLA and SLC25A48 in copy-number-variation regions associated with tick resistance. The Discussion (CNVR functional enrichment; page unavailable) links BoLA to antigen presentation and identifies KRT33A as a keratin-family gene. Our copy does not identify the other listed keratin genes, MLPH, or MC5R, or report light coat color or sebum secretion; it also describes CNVRs rather than establishing selection signatures for the full list. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [103] Makina, 2015, Genome-Wide Scan for Selection Signatures in Six Cattle Breeds in South Africa, Genet. Sel. Evol. source
The Results and Discussion (page unavailable) identify selection signatures involving SLC25A48 in antigen recognition and KRT222 and KRT24–27 in keratin formation. The copy does not identify the other named genes—BoLA, KRT33A, TGM1, TGM3, MLPH, or MC5R—as selected; its coat-colour finding concerns MC1R, not MLPH, and it does not report sebum secretion. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Rests on an assumption: In tropical regions, pathogens such as trypanosome parasites and ticks exert immense selective pressure.
- Premisecitation
In Zhangmu cattle, hypoxia-adaptive genes EPAS1, EGLN1, and NOS2 were shown to be introgressed from yaks.
“In Zhangmu cattle, hypoxia-adaptive genes at the core of the hypoxia-inducible factor pathway, including EPAS1 and EGLN1, as well as the nitric oxide synthase gene NOS2, were shown to be introgressed from yaks [97].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [97] Liu, 2021, Selection and Introgression Facilitated the Adaptation of Chinese Native Endangered Cattle in Extreme Environments, Evol. Appl. source
- Rests on an assumption: The Qinghai-Tibetan Plateau has extreme environmental conditions including strong ultraviolet radiation, hypoxia, low temperatures, and limited forage availability.
- Premisecitation
MC1R mutations generate the red coat color phenotype in Ankole and Evolèner cattle populations.
“MC1R mutations generate the red coat color phenotype in Ankole and Evolèner cattle populations [82,139].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [82] Kim, 2017, The Genome Landscape of Indigenous African Cattle, Genome Biol. source
In Results and discussion (page unavailable), the paper identifies MC1R as a coat-color candidate locus in predominantly red Ankole cattle and says previous reports link MC1R mutations to red coat color. It does not establish a causal MC1R mutation in Ankole or address Evolèner cattle. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [139] Goud, 2021, Molecular Characterization of Coat Color Gene in Sahiwal versus Karan Fries Bovine, J. Genet. Eng. Biotechnol. source
The Background and Discussion (page not provided) link MC1R variation, including the recessive e allele, to red coat color in cattle. They do not report this finding for Ankole or Evolèner populations; the population-specific part of the claim is unsupported. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Rests on an assumption: Red and black coat colors are determined by the ratio of eumelanin to pheomelanin, which is regulated by variations in melanogenesis pathway-related genes ASIP, MC1R, and KIT.
- Premisecitation
In southern Chinese cattle, genes related to tick and bacterial resistance (LTF, TGM3, BCAR3) show evidence of being under selection.
“Similarly, in southern Chinese cattle, genes related to tick and bacterial resistance (LTF, TGM3, BCAR3) show evidence of being under selection [105].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [105] Liu, Y., Xu, L., Yang, L., Zhao, G., Li, J., Liu, D., and Li, Y. (2020). Discovery of Genomic Characteristics and Selection Signatures in Southern Chinese Local Cattle. Front. Genet., 11. source
- Premisecitation
Compared with Wagyu cattle, the highly aggressive Lidia breed shows upregulated expression of genes enriched in pathways linked to abnormal aggression and neurophysiological disorders, including LAMA2, DRD2, and GAD2.
“Compared with Wagyu cattle, the highly aggressive Lidia breed shows upregulated expression of genes enriched in pathways linked to abnormal aggression and neurophysiological disorders, including LAMA2, DRD2, and GAD2 [131].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [131] Eusebi, P.G., Sevane, N., O’Rourke, T., Pizarro, M., Boeckx, C., and Dunner, S. (2021). Gene Expression Profiles Underlying Aggressive Behavior in the Prefrontal Cortex of Cattle. BMC Genom., 22. source
The Results table lists LAMA2 and DRD2 as up-regulated in aggressive Lidia cattle, and the Discussion links the up-regulated genes to aggression and neurodevelopment. But the same table and Discussion identify GAD2 as down-regulated, not up-regulated. No page numbers are available in our copy. (LLM, conf=0.94)
Experimental — accuracy not yet measured
- Premisecitation
Specific SVs in CRNN, SBSN and SPINK5 were identified in Hainan and Mongolian cattle, affecting skin barrier function and heat adaptation.
“Specific SVs in CRNN, SBSN and SPINK5 were also identified in Hainan and Mongolian cattle, affecting skin barrier function and heat adaptation (hair follicle density, sweat gland area) [101].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [101] Xia, 2023, Structural Variation and Introgression from Wild Populations in East Asian Cattle Genomes Confer Adaptation to Local Environment, Genome Biol. source
The Results section identifies differentiated SVs in CRNN, SBSN and SPINK5 and links those genes to epidermal differentiation or skin barrier function. The Discussion says the SVs may reflect differences in environmental adaptation, citing hair follicle density and sweat gland area, but does not establish that the SVs affect those traits or heat adaptation. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Premisecitation
In light- and dark-coated South Asian indicine cattle breeds, pigmentation-related genes (LEF1, ASIP) and hair development genes (LIPH, FGF22) were under selection.
“In a comparison of light- and dark-coated South Asian indicine cattle breeds, pigmentation-related genes (LEF1, ASIP) were under selection, as well as hair development genes (LIPH, FGF22) [10].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [10] Chen, 2023, Global Genetic Diversity, Introgression, and Evolutionary Adaptation of Indicine Cattle Revealed by Whole Genome Sequencing, Nat. Commun. source
The Results section on South Asian indicine cattle reports selective sweeps near LEF1 and ASIP in light-coated breeds compared with dark-coated breeds. Table 1 in the Results identifies LIPH and FGF22 as hair-development genes under selection, but those findings come from a broader indicine-versus-taurine comparison, not the light-versus-dark South Asian breed comparison. (LLM, conf=0.90)
Experimental — accuracy not yet measured
- Premisecitation
In Ethiopian highland breed Gojjam, genes involved in HIF-1 signaling (GBE1, NEK7) and oxidative stress resistance (SOD1) exhibited strong signatures of selection.
“In the Ethiopian highland breed Gojjam, which resides at altitudes above 4000 m, genes involved in the hypoxia-inducible factor-1 signaling pathway (GBE1, NEK7) and oxidative stress resistance (SOD1) exhibited strong signatures of selection [99].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [99] Ayalew, W., Xiaoyun, W., Tarekegn, G.M., Tessema, T.S., Chu, M., Liang, C., Naboulsi, R., Van Damme, R., Bongcam-Rudloff, E., and Ping, Y. (2024). Whole-Genome Sequencing of Copy Number Variation Analysis in Ethiopian Cattle Reveals Adaptations to Diverse Environments. BMC Genom., 25. source
The Discussion identifies GBE1 and SOD1 as candidate genes associated with high-altitude hypoxia and oxidative-stress protection, while the Results report significant highland–lowland differentiation for a CNVR containing NEK7. It does not establish strong selection signatures for all three genes or identify NEK7 itself as a HIF-1 signaling gene. Materials and methods places the sampled Gojjam cattle at 4,000 m, not above 4,000 m; page numbers are unavailable in our copy. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Premisecitation
The linear model fundamentally fails to capture the full genetic diversity, such as SVs and PAVs, particularly in non-reference populations like Bos indicus.
“While invaluable, this linear model fundamentally fails to capture the full genetic diversity, such as SVs and presence/absence variations (PAVs) [182], particularly in non-reference populations like Bos indicus [180].”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [182] Boschiero, C., Neupane, M., Yang, L., Schroeder, S.G., Tuo, W., Ma, L., Baldwin, R.L., Van Tassell, C.P., and Liu, G.E. (2024). A Pilot Detection and Associate Study of Gene Presence-Absence Variation in Holstein Cattle. Animals, 14. source
The Discussion (no page given) says the linear reference genome assembly constrained detection of PAVs, and the Introduction identifies PAVs as a form of SV. It does not establish that the linear model fundamentally fails to capture SVs generally. The Bos indicus clause carries a different citation, so it is not assessed against this source. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [180] Smith, 2023, The Bovine Pangenome Consortium: Democratizing Production and Accessibility of Genome Assemblies for Global Cattle Breeds and Other Bovine Species, Genome Biol. source
- Premisecitation
In Hanwoo, genomic regions under selection for carcass and growth traits are mainly located on chromosomes 6 and 14, including candidate genes LCORL, NCAPG, PPARGC1A, etc.
“In Hanwoo, genomic regions under selection for carcass and growth traits are mainly located on chromosomes 6 and 14, including candidate genes LCORL, NCAPG, PPARGC1A, ABCG2, FAM110B, FABP4, DGAT1, PLAG1, and TOX [170,171].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [170] Naserkheil, 2022, Exploring and Identifying Candidate Genes and Genomic Regions Related to Economically Important Traits in Hanwoo Cattle, Curr. Issues Mol. Biol. source
- cites [171] Seo, 2022, Long-Term Artificial Selection of Hanwoo (Korean) Cattle Left Genetic Signatures for the Breeding Traits and Has Altered the Genomic Structure, Sci. Rep. source
The Results and Discussion identify selection signals on BTA14 associated with carcass weight and eye muscle area, near PLAG1. They do not support the claim that the regions are mainly on chromosomes 6 and 14: the paper emphasizes BTA13 and BTA14, and the cited passages do not identify LCORL, NCAPG, or PPARGC1A as candidate genes from this study. Page numbers are unavailable in our copy. (LLM, conf=0.89)
Experimental — accuracy not yet measured
- Premisecitation
KIT, MITF and PAX3 are key regulators of melanocyte development, migration, and differentiation in cattle with white spotting patterns.
“KIT, MITF and PAX3 are key regulators of melanocyte development, migration, and differentiation in cattle with white spotting patterns [88].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [88] Jivanji, 2019, Genome-Wide Association Analysis Reveals QTL and Candidate Mutations Involved in White Spotting in Cattle, Genet. Sel. Evol. source
- Premisecitation
Graph pangenomes, facilitated by third-generation long-read sequencing, effectively resolve highly repetitive regions and centromeres.
“Graph pangenomes, facilitated by third-generation long-read sequencing, effectively resolve highly repetitive regions and centromeres [183].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [183] Liu, 2025, Exploring Cattle Structural Variation in the Era of Long Reads, Pangenome Graphs, and near-Complete Assemblies, J. Anim. Sci. Biotechnol. source
The Pangenome graphs section (page unavailable) says graph frameworks improve variant discovery and genotyping in repetitive and structurally complex regions, in the context of long-read data. The Advances in genome assemblies section (page unavailable) attributes resolution of centromeres to nearly complete assemblies, not specifically to graph pangenomes, so that part of the claim is unsupported. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Premisecitation
Selected lines of Qinchuan cattle (QNS) show strong selection in growth and meat quality genes (PLCD3, MB, PPARGC1A) compared with the original population (QCC).
“Selected lines of Qinchuan cattle (QNS) show strong selection in growth and meat quality genes (PLCD3, MB, PPARGC1A) compared with the original population (QCC) [172].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [172] Mei, 2019, Genome-Wide Analysis Reveals the Effects of Artificial Selection on Production and Meat Quality Traits in Qinchuan Cattle, Genomics source
- Premisecitation
A transcriptome study of pituitaries from fast-growing Yunling cattle and slow-growing Leiqiong cattle identified candidate genes involved in growth hormone regulation.
“A transcriptome study of pituitaries from fast-growing Yunling cattle and slow-growing Leiqiong cattle identified candidate genes involved in growth hormone regulation, including SLC38A1, SLC38A3, DGKH, GNB4, GNAQ, ESR1, NPY, and GAL [174].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [174] Lu, X., Arbab, A.A.I., Zhang, Z., Fan, Y., Han, Z., Gao, Q., Sun, Y., and Yang, Z. (2020). Comparative Transcriptomic Analysis of the Pituitary Gland between Cattle Breeds Differing in Growth: Yunling Cattle and Leiqiong Cattle. Animals, 10. source
- Premisecitation
A complex SV situated 66 kb upstream of the KIT gene, a variable number of tandemly duplicated 14.3 kb repeats, has been identified as the causal mutation for the white-head phenotype.
“A striking example is the complex SV situated 66 kb upstream of the KIT gene: a variable number of tandemly duplicated 14.3 kb repeats has been identified as the causal mutation for the white-head phenotype, a trait whose heritability was previously difficult to pinpoint using standard SNP arrays [187].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [187] Milia, 2025, Taurine Pangenome Uncovers a Segmental Duplication Upstream of KIT Associated with Depigmentation in White-Headed Cattle, Genome Res. source
The Results (pages unavailable in our copy) locate the complex SV 66 kb upstream of KIT and describe a variable number of 14.3 kb duplication units in white-headed cattle. The Discussion calls it a promising SV associated with the phenotype and treats its functional mechanism as speculative, so the claim that it was identified as the causal mutation overstates the evidence. The paper discusses earlier mapping difficulties but does not establish the sentence’s specific claim about standard SNP arrays. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Premisecitation
Traditional genomic studies have heavily relied on a single linear reference genome, such as ARS-UCD1.2, which is derived from Hereford.
“Traditional genomic studies have heavily relied on a single linear reference genome [180], such as ARS-UCD1.2, which is derived from an individual of a specific taurine breed, Hereford [181] (Table 3).”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [180] Smith, 2023, The Bovine Pangenome Consortium: Democratizing Production and Accessibility of Genome Assemblies for Global Cattle Breeds and Other Bovine Species, Genome Biol. source
- cites [181] Rosen, 2020, De Novo Assembly of the Cattle Reference Genome with Single-Molecule Sequencing, Gigascience source
- Premisecitation
Aurochs inhabited the temperate and subtropical biomes of Eurasia and North Africa during the Pleistocene and Holocene epochs.
“This bovine species once inhabited the temperate and subtropical biomes of Eurasia and North Africa during the Pleistocene and Holocene epochs.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [4] Felius, 2014, On the History of Cattle Genetic Resources, Diversity source
- Premisecitation
Cattle were domesticated via the prey pathway, a gradual transition from hunting wild bovids to managed husbandry.
“Cattle were domesticated via the prey pathway, a gradual transition from the hunting of wild bovids to managed husbandry, thereby securing consistent access to these animal resources [2].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [2] Larson, 2014, The Evolution of Animal Domestication, Annu. Rev. Ecol. Evol. Syst. source
- Premisecitation
Since the Last Glacial Maximum, gene flow has occurred between the western aurochs and Central Asian populations.
“Since the Last Glacial Maximum (LGM), gene flow has occurred between the western aurochs and Central Asian populations [20].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [20] Cai, 2025, Ancient Genomes Illuminate the Origins and Dynamic History of East Asian Cattle, Science source
- Premisecitation
Aurochs was the direct progenitor of both humpless taurine and humped zebu cattle.
“The aurochs (Bos primigenius) was the direct progenitor of both humpless taurine and humped zebu cattle [4].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [4] Felius, 2014, On the History of Cattle Genetic Resources, Diversity source
- Premisecitation
Approximately 10,500 years ago, European aurochs in the Fertile Crescent were domesticated into taurine cattle.
“Approximately 10,500 years ago, in the Fertile Crescent of the Near East, European aurochs (Bos primigenius primigenius) were domesticated into taurine cattle (Bos taurus) [5].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [5] Achilli, 2008, Mitochondrial Genomes of Extinct Aurochs Survive in Domestic Cattle, Curr. Biol. source
- Premisecitation
By 7000 years ago, evidence of milk consumption was found in pottery from burial sites in both the Near East and southeastern Europe.
“Additionally, by 7000 years ago, evidence of milk consumption was found in pottery from burial sites in both the Near East and southeastern Europe [25].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [25] Evershed, 2008, Earliest Date for Milk Use in the Near East and Southeastern Europe Linked to Cattle Herding, Nature source
- Premisecitation
The domestication of zebu cattle represents an independent event involving the Indian aurochs.
“The domestication of zebu cattle represents an independent event involving the Indian aurochs.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [11] Fuller, 2006, Agricultural Origins and Frontiers in South Asia: A Working Synthesis, J. World Prehist. source
- Premisenone given
The European continent in the early Neolithic was a region where European wild aurochs and domestic cattle coexisted.
“The European continent in the early Neolithic was a region where European wild aurochs and domestic cattle coexisted.”
Quote in the paperSubstantial claim - Premisecitation
Modern northern European cattle populations maintain a high frequency of Y1 haplogroup, directly reflecting the hybridization with male aurochs during the dispersal of domestic cattle into northern Europe.
“Modern northern European cattle populations maintain a high frequency of Y1 haplogroup, directly reflecting the hybridization with male aurochs during the dispersal of domestic cattle into northern Europe [34].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [34] Anderung, 2005, Cattle Domestication in the Near East Was Followed by Hybridization with Aurochs Bulls in Europe, Proc. Biol. Sci.
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- Premisenone given
Cattle dispersal was not a simple replacement of wild populations but a complex process involving introgressive hybridization with local wild aurochs and other Bos species.
“This dispersal was not a simple replacement of wild populations but a complex process involving introgressive hybridization with local wild aurochs and other Bos species.”
Quote in the paperNot a substantial claim - Premisenone given
Modern cattle populations can be classified based on three genetic systems: mitochondrial, Y-chromosomal, and autosomal DNA.
“Modern cattle populations can be classified based on three genetic systems: mitochondrial, Y-chromosomal, and autosomal DNA.”
Quote in the paperSubstantial claim - Interpretationreasoning
The introduction of zebu male individuals enhanced the herd's survival capacity in arid environments.
“The introduction of zebu male individuals enhanced the herd’s survival capacity in arid environments.”
Quote in the paperNot a substantial claim - Premisecitation
The Y1 haplogroup is predominantly found in northern Europe.
“The Y1 haplogroup is predominantly found in northern Europe [34].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [34] Anderung, 2005, Cattle Domestication in the Near East Was Followed by Hybridization with Aurochs Bulls in Europe, Proc. Biol. Sci.
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- Premisenone given
Modern European cattle gave rise to the world's most productive dairy and beef breeds.
“Modern European cattle gave rise to the world’s most productive dairy and beef breeds.”
Quote in the paperNot a substantial claim - Premisecitation
The main mitochondrial lineages of modern cattle are the mtDNA taurine T lineage and the zebu I lineage.
“As mentioned, the main mitochondrial lineages of modern cattle are the mtDNA taurine T lineage and the zebu I lineage [8].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [8] Loftus, 1994, Evidence for Two Independent Domestications of Cattle, Proc. Natl. Acad. Sci. USA source
- Premisecitation
Populations from Guangxi and Fujian in southern East Asia reached Southeast Asia about 4000 years ago.
“Populations from Guangxi and Fujian in southern East Asia reached Southeast Asia about 4000 years ago [64].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [64] Liu, 2021, Maternal Genetic History of Southern East Asians over the Past 12,000 Years, J. Genet. Genom. source
- Premisecitation
Gene flow has been observed from East Asian aurochs into ancient and present-day Tibetan cattle.
“Similarly, gene flow has been observed from East Asian aurochs into ancient and present-day Tibetan cattle [18].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [18] Hou, 2024, Evolution and Legacy of East Asian Aurochs, Sci. Bull. source
- Premisecitation
Zebu ancestry was widely distributed across northern China in the Medieval period.
“Zebu ancestry was widely distributed across northern China in the Medieval period [20].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [20] Cai, 2025, Ancient Genomes Illuminate the Origins and Dynamic History of East Asian Cattle, Science source
- Premisecitation
HSPA1A and HSPA1B expression vary seasonally in zebu cattle, being higher in summer than in spring.
“HSPA1A and HSPA1B expression vary seasonally in zebu cattle, being higher in summer than in spring [114].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [114] Kumar, 2015, Expression Profiling of Major Heat Shock Protein Genes during Different Seasons in Cattle (Bos Indicus) and Buffalo (Bubalus Bubalis) under Tropical Climatic Condition, J. Therm. Biol. source
- Rests on an assumption: The heat shock protein (HSP) family protects cells from thermal damage and prevents protein denaturation.
- Premisecitation
Following the severe threat posed by cattle tick infestations to tropical Queensland herds in 1896, zebu cattle from India and the United States were introduced for crossbreeding to confer tick resistance.
“Following the severe threat posed by cattle tick infestations to tropical Queensland herds in 1896, zebu cattle from India and the United States were introduced for crossbreeding to confer tick resistance [4].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [4] Felius, 2014, On the History of Cattle Genetic Resources, Diversity source
- Premisenone given
Cattle breeds in high-latitude regions, such as the Yakut of Siberia and Yanbian cattle of China, face extreme cold stress.
“Cattle breeds in high-latitude regions, such as the Yakut of Siberia and Yanbian cattle of China, face extreme cold stress.”
Quote in the paperSubstantial claim - Premisenone given
Recent studies employing whole-genome sequencing, transcriptomics, genome-wide association analysis, and selection signal detection have allowed the precise identification of specific molecular mechanisms underlying environmental adaptations, such as thermal tolerance, disease resistance, and high-altitude adaptation.
“Recent studies employing whole-genome sequencing, transcriptomics, genome-wide association analysis, and selection signal detection have allowed the precise identification of the specific molecular mechanisms underlying environmental adaptations, such as thermal tolerance, disease resistance, and high-altitude adaptation (Figure 2 and Table 2).”
Quote in the paperNot a substantial claim - Premisecitation
In Australia, British cattle breeds including Holstein, Shorthorn, Hereford, and Angus were introduced from the 19th century.
“In Australia, British cattle breeds including Holstein, Shorthorn, Hereford, and Angus were introduced from the 19th century [4].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [4] Felius, 2014, On the History of Cattle Genetic Resources, Diversity source
- Premisenone given
Modern domestic cattle in the United States and Australia trace their lineages to two primary ancestral groups: European cattle and Indian humped cattle.
“Modern domestic cattle in the United States and Australia trace their lineages to two primary ancestral groups: European cattle and Indian humped cattle.”
Quote in the paperNot a substantial claim - Interpretationreasoning
This diverse genetic background contributed to the remarkable ability of these cattle to adapt to the harsh, semi-arid environments of the American Southwest and the tropics of Latin America.
“This diverse genetic background contributed to their remarkable ability to adapt to the harsh, semi-arid environments of the American Southwest and the tropics of Latin America.”
Quote in the paperNot a substantial claim - Premisecitation
Tropical zebu breeds possess morphological features such as dewlaps, sparse coats, developed sweat glands, and light-colored hair to facilitate heat dissipation.
“Tropical zebu breeds possess morphological features such as dewlaps, sparse coats, developed sweat glands, and light-colored hair to facilitate heat dissipation [111].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [111] Collier, 2015, Thermal Biology of Domestic Animals, Annu. Rev. Anim. Biosci. source
- Premisereasoning
Natural selection has reshaped the cattle genome, enabling cattle to thrive in diverse geographical and climatic environments.
“Natural selection has reshaped the cattle genome, enabling cattle to thrive in diverse geographical and climatic environments.”
Quote in the paperSubstantial claim - Premisenone given
Recent pangenome studies have highlighted the importance of structural variants in adaptation.
“Recent pangenome studies have highlighted the importance of structural variants in adaptation.”
Quote in the paperNot a substantial claim - Interpretationreasoning
Thermal adaptation involves a complex network of genes regulating thermogenesis, heat and cold stress response, lipid metabolism and immunity.
“In summary, thermal adaptation involves a complex network of genes regulating thermogenesis, heat and cold stress response, lipid metabolism and immunity.”
Quote in the paperNot a substantial claim - Premisecitation
Structural variations in ASIP are prevalent in zebu cattle populations (45.9%).
“Structural variations in ASIP are prevalent in zebu cattle populations (45.9%) [141].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [141] Trigo, 2023, A Structural Variant at ASIP Associated with the Darkness of Hair Coat Is Found in Multiple Zebu Cattle Populations, Anim. Genet. source
- Interpretationreasoning
Selection for PRLR enhances heat tolerance by modifying hair coat length and structure.
“Selection for PRLR enhances heat tolerance by modifying hair coat length and structure.”
Quote in the paperNot a substantial claim - Premisecitation
The DMBT1 gene, associated with resistance to intestinal parasites, has undergone selection.
“Regarding intestinal mucosal defense, the DMBT1 gene, associated with resistance to intestinal parasites, has also undergone selection [81].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [81] Taye, 2018, Exploring the Genomes of East African Indicine Cattle Breeds Reveals Signature of Selection for Tropical Environmental Adaptation Traits, Cogent Food Agric. source
- Premisecitation
The expression of TLR2/4 and IL2/6 in blood was upregulated under both short-term and long-term heat stress.
“Additionally, the expression of TLR2/4 and IL2/6 in blood was upregulated under both short-term and long-term heat stress [117].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [117] Bharati, 2017, Expression Analysis of Toll like Receptors and Interleukins in Tharparkar Cattle during Acclimation to Heat Stress Exposure, J. Therm. Biol. source
- Interpretationnone given
Domestic cattle dispersed across every continent after the initial domestication of the aurochs.
“From the initial domestication of the aurochs to their widespread dispersal across every continent, cattle have continuously adapted to novel environments through a combination of standing genetic variation, adaptive introgression from wild relatives (such as banteng and yak), and intense artificial selection.”
Quote in the paperSubstantial claim - Interpretationreasoning
These hidden variants explain a substantial fraction of the missing heritability in complex traits that GWAS based on linear reference genomes have failed to detect.
“These hidden variants explain a substantial fraction of the missing heritability in complex traits, such as disease resistance and adaptation, that GWAS based on linear reference genomes have failed to detect.”
Quote in the paperNot a substantial claim - Interpretationreasoning
Taurine and zebu cattle were domesticated in two independent events.
“By synthesizing robust evidence from archaeology and molecular biology, we have reconstructed the two independent domestication events of taurine and zebu cattle and traced their complex migration and hybridization history.”
Quote in the paperSubstantial claim - Premisecitation
Xia et al. identified genes involved in meat quality traits in Simmental, including fat color, meat color, marbling, longissimus dorsi, and shear force.
“Xia et al. [177] identified genes involved in meat quality traits in Simmental, including fat color (TMEM236), meat color (SORL1, TRDN), marbling (S100A10, AP2S1), longissimus dorsi (KCTD16, LOC506594), and shear force (DHX15, LAMA4, PREX1, BRINP3).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [177] Xia, 2016, Genome-Wide Association Study Identifies Loci and Candidate Genes for Meat Quality Traits in Simmental Beef Cattle, Mamm. Genome source
- Premisecitation
Lactation-related genes including DGAT1, SCD1, ABCG2, GHR, and PR are strongly associated with milk yield and milk composition.
“Genomic studies have revealed that lactation-related genes, including DGAT1, SCD1, ABCG2, GHR, and PR, are strongly associated with milk yield and milk composition [148].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [148] Ozdemir, 2025, Associations Between BLG, CSN3, DGAT1, GH, PIT1, and PRL Gene Polymorphisms and Milk Production Traits in Holstein Dairy Cows: A Meta-Analysis, Biochem. Genet. source
- Interpretationreasoning
The bovine genome has evolved a versatile genetic foundation driven by both natural and artificial selection, enabling cattle to meet diverse production objectives across contrasting environments.
“Overall, the bovine genome has evolved a versatile genetic foundation, driven by both natural and artificial selection, enabling cattle to meet diverse production objectives across contrasting environments.”
Quote in the paperSubstantial claim
- May combine two claims. 82
- Classified as probably not a substantial claim. 22
May combine two claims.
PremisecitationThe indicine ancestry in African cattle does not entirely correspond with northern Indian zebu cattle, but shows similarities to Southeast Asian zebu cattle, indicating exchanges between zebu cattle introduced to Africa and Southeast Asian herds in the expansion.
“Notably, the indicine ancestry in African cattle does not entirely correspond with northern Indian zebu cattle, but shows similarities to Southeast Asian zebu cattle, which indicates exchanges between zebu cattle introduced to Africa and Southeast Asian herds in the expansion [46,47].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [46] Kim, 2023, Inference of Admixture Origins in Indigenous African Cattle, Mol. Biol. Evol. source
Split into 2 atoms — 1 confirmed, 0 partially supported, 1 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Checked by a reasoning model — may be wrong.
Experimental — accuracy not yet measured - cites [47] Pitt, 2019, Domestication of Cattle: Two or Three Events?, Evol. Appl. source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationSignificant influxes occurred during the Arab expansion (~700 AD), introducing male zebu cattle with the Y3b and Y3c sub-haplogroups, and again in the late 19th century, when cattle of the Y3a sub-haplogroup were introduced to restock herds devastated by the Rinderpest pandemic.
“Significant influxes occurred during the Arab expansion (~700 AD), introducing male zebu cattle with the Y3b and Y3c sub-haplogroups, and again in the late 19th century, when cattle of the Y3a sub-haplogroup were introduced to restock herds devastated by the Rinderpest pandemic [36].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [36] Ferraz, 2018, Legacies of Domestication, Trade and Herder Mobility Shape Extant Male Zebu Cattle Diversity in South Asia and Africa, Sci. Rep. source
Split into 2 atoms — 0 confirmed, 1 partially supported, 1 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Checked by a reasoning model — may be wrong.
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationIndividuals carrying the lysine (K) allele of DGAT1 exhibit a higher milk fat percentage, whereas those with the alanine (A) allele show higher milk protein content and total milk yield.
“Individuals carrying the lysine (K) allele exhibit a higher milk fat percentage in both Holstein and other indigenous dairy cattle breeds, whereas those with the alanine (A) allele show higher milk protein content and total milk yield [151,152,153,154].”
Quote in the paperNot a substantial claim3 of 4 sources checked- cites [151] Fikse, 2008, Frequency and Effect of the Bovine Acyl-CoA:Diacylglycerol Acyltransferase 1 (DGAT1) K232A Polymorphism in Swedish Dairy Cattle, J. Dairy Sci. source
The Abstract (page unavailable) associates the K variant with higher milk fat percentage and lower milk yield than the A variant, supporting those parts of the claim in Swedish Holstein and Swedish Red cattle. It also associates K—not A—with higher milk protein percentage, contrary to the claim about protein content. The Effect of the DGAT1 K232A Polymorphism section (page unavailable) reports no observed milk-yield differences between the three genotypes. (LLM, conf=0.90)
Experimental — accuracy not yet measured - cites [152] Houaga, 2018, Milk Fatty Acid Variability and Association with Polymorphisms in SCD1 and DGAT1 Genes in White Fulani and Borgou Cattle Breeds, Mol. Biol. Rep. source
The Results (Effects of the DGAT1 K232A polymorphism; page unavailable) report no significant effect of the polymorphism on milk composition in either Borgou or White Fulani cattle, contrary to the claimed allele-specific differences in those indigenous breeds. The Introduction mentions a prior association of the KK genotype with higher fat yield, but that is not higher fat percentage; it does not report higher protein content or milk yield for the A allele. (LLM, conf=0.83)
Checked by a reasoning model — may be wrong.
Experimental — accuracy not yet measured - cites [153] Elzaki, 2022, Effects of DGAT1 on Milk Performance in Sudanese Butana × Holstein Crossbred Cattle, Trop. Anim. Health Prod. source
The Introduction says the lysine (K232) variant is associated with higher milk fat and protein contents but lower milk yield. The Abstract reports that K232 decreased milk yield in the studied crossbreds, supporting the converse for alanine, but found no significant effect on protein content. Thus the source does not support the claim that the alanine variant raises milk protein content; its stated association points the other way. (LLM, conf=0.90)
Experimental — accuracy not yet measured - cites [154] Gothwal, 2023, Candidate K232A Mutation of DGAT1 Gene Associated with Production and Reproduction Traits in Indian Dairy Cattle, Anim. Biotechnol. source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationOver one thousand recognized cattle breeds exist globally, each shaped by long-term artificial selection and local environmental adaptation.
“To date, over one thousand recognized cattle breeds exist globally, each uniquely shaped by long-term artificial selection and local environmental adaptation [3,4].”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [3] Institute of Animal Production and Fisheries, Siedlce University of Natural Sciences and Humanities, 08-110 Siedlce, ul. Prusa 14, and Guliński, P. (2022). Cattle Breeds—Contemporary Views on Their Origin and Criteria for Classification: A Review. Acta Sci. Pol. Zootech., 20, 3–18. source
- cites [4] Felius, 2014, On the History of Cattle Genetic Resources, Diversity source
May combine two claims.
PremisecitationDomesticated populations dispersed beyond their area of origin, with the ancestral strain of aurochs undergoing male-mediated genetic admixture.
“Subsequently, domesticated populations dispersed beyond their area of origin, with the ancestral strain of aurochs undergoing male-mediated genetic admixture [12].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [12] Rossi, 2024, The Genomic Natural History of the Aurochs, Nature source
May combine two claims.
PremisecitationItaly and the Fertile Crescent harbor the T haplogroup dominant in modern domestic cattle, while central and northern European aurochs gave rise to the P haplogroup, which expanded from the Iberian Peninsula following the Last Ice Age.
“Italy and the Fertile Crescent harbor the T haplogroup, dominant in modern domestic cattle, while central and northern European aurochs gave rise to the P haplogroup, which expanded from the Iberian Peninsula following the Last Ice Age [12,13].”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [12] Rossi, 2024, The Genomic Natural History of the Aurochs, Nature source
In “Divergent demography in the aurochs” (Fig. 3 caption; page unavailable), the paper identifies T as a major domestic haplogroup, places domesticated haplogroups in the Fertile Crescent, and says P predominated among sampled Holocene European aurochs. It also links central and northern European genomes to an Iberian source of postglacial recolonization, but does not establish that Italy harbored T or that the P haplogroup specifically arose in central and northern Europe and expanded from Iberia. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [13] Mona, S., Catalano, G., Lari, M., Larson, G., Boscato, P., Casoli, A., Sineo, L., Di Patti, C., Pecchioli, E., and Caramelli, D. (2010). Population Dynamic of the Extinct European Aurochs: Genetic Evidence of a North-South Differentiation Pattern and No Evidence of Post-Glacial Expansion. BMC Evol. Biol., 10. source
The Results (Analysis of haplotype diversity) and Discussion identify T haplotypes in Italian aurochs and early specimens from Syria and Turkey, and P haplotypes as typical of northern and central European aurochs. The Discussion does not establish an Iberian post-glacial expansion: it says an Iberian contribution cannot be ruled out, while eastern refugia may have been important. (LLM, conf=0.88)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationThe P, Q, and R haplogroups represent ancient branches parallel to the T lineage, indicating secondary introgression of European aurochs genes during the expansion of cattle populations into Europe.
“The P, Q, and R haplogroups represent ancient branches parallel to the T lineage, indicating secondary introgression of European aurochs genes during the expansion of cattle populations into Europe [5,39,40].”
Quote in the paperSubstantial claim2 of 3 sources checked- cites [5] Achilli, 2008, Mitochondrial Genomes of Extinct Aurochs Survive in Domestic Cattle, Curr. Biol. source
- cites [39] Bonfiglio, S., Achilli, A., Olivieri, A., Negrini, R., Colli, L., Liotta, L., Ajmone-Marsan, P., Torroni, A., and Ferretti, L. (2010). The Enigmatic Origin of Bovine mtDNA Haplogroup R: Sporadic Interbreeding or an Independent Event of Bos Primigenius Domestication in Italy?. PLoS ONE, 5. source
The Introduction identifies P, Q and R as ancient non-T mitochondrial branches. But the Discussion describes Q as a lineage likely domesticated in the Near East and spread with human migrations; it considers European-aurochs interbreeding only as one possible explanation for R in Italian cattle. The paper therefore does not support attributing secondary European-aurochs introgression to all three haplogroups during cattle’s expansion into Europe. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [40] Achilli, A., Bonfiglio, S., Olivieri, A., Malusà, A., Pala, M., Hooshiar Kashani, B., Perego, U.A., Ajmone-Marsan, P., Liotta, L., and Semino, O. (2009). The Multifaceted Origin of Taurine Cattle Reflected by the Mitochondrial Genome. PLoS ONE, 4. source
The Discussion sections on non-T mtDNAs and haplogroup R identify P, Q, and R as distinct from T and attribute P and R to interbreeding with European aurochsen. But “A Near Eastern Domestication for Haplogroup Q” says Q most likely arose from Near Eastern aurochs and spread with human migrations, so the proposed European-aurochs introgression does not apply to all three. Page numbers are not provided in our copy’s passages. (LLM, conf=0.92)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationZebu cattle genetically harbor the mtDNA I1 and I2 haplogroups; the diversity of I1 and I2 haplogroups in the northern Indian subcontinent is higher than in other parts of Asia.
“Zebu cattle genetically harbor the mtDNA I1 and I2 haplogroups. The diversity of I1 and I2 haplogroups in the northern Indian subcontinent is higher than in other parts of Asia [6].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [6] Chen, 2010, Zebu Cattle Are an Exclusive Legacy of the South Asia Neolithic, Mol. Biol. Evol. source
May combine two claims.
PremisecitationThe establishment of European cattle was also influenced by early African pastoralist maritime trade; the T1 haplogroup constitutes 5-30% of cattle in Mediterranean coastal areas, such as Spain and Greece, whereas it is absent in central and northern Europe.
“The establishment of European cattle was also influenced by early African pastoralist maritime trade. The T1 haplogroup constitutes 5–30% of cattle in Mediterranean coastal areas, such as Spain and Greece, whereas it is absent in central and northern Europe [26].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [26] Caramelli, 2006, The Origin of European Cattle: Evidence from Modern and Ancient DNA, Proc. Natl. Acad. Sci. USA source
Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationThe mtDNA I1 haplogroup and Y3b sub-haplogroup are widely distributed in India and other parts of the world, while Y3a sub-haplogroup predominates in southern China and Southeast Asia.
“The mtDNA I1 haplogroup and Y3b sub-haplogroup are widely distributed in India and other parts of the world, while Y3a sub-haplogroup predominates in southern China and Southeast Asia [6,9,36,37].”
Quote in the paperNot a substantial claim4 of 4 sources checked- cites [6] Chen, 2010, Zebu Cattle Are an Exclusive Legacy of the South Asia Neolithic, Mol. Biol. Evol. source
The Introduction (page not provided) says mtDNA I1 is the most frequent haplogroup in India and the rest of Asia, supporting the I1 portion of the claim. The paper analyzes mitochondrial I1 and I2, but the passages retrieved for Y3a and Y3b do not address either Y-chromosome sub-haplogroup or its stated distribution. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [9] Chen, 2018, Whole-Genome Resequencing Reveals World-Wide Ancestry and Adaptive Introgression Events of Domesticated Cattle in East Asia, Nat. Commun. source
The Results section (Paternal and maternal phylogenetic analyses; page unavailable) says Y3a dominated cattle from South China and Y3b was mainly carried by three breeds of Indian origin. It identifies I1a within I1 in Chinese indicine cattle, but does not establish that I1 and Y3b are widely distributed in India and elsewhere, or that Y3a predominates in Southeast Asia. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [36] Ferraz, 2018, Legacies of Domestication, Trade and Herder Mobility Shape Extant Male Zebu Cattle Diversity in South Asia and Africa, Sci. Rep. source
The Introduction reports that mtDNA I1 may have spread through South Asia and beyond, and identifies Y3b mainly with Indian sires. The Results identify Y3b-compatible lineages in India and Africa and say Y3a was mainly identified in Chinese sires. Neither passage establishes that Y3a predominates specifically in southern China and Southeast Asia; the paper also identifies Y3a-compatible samples in India. Page numbers were not available in our copy. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [37] Royo, 2010, Y-Specific Microsatellites Reveal an African Subfamily in Taurine (Bos taurus) Cattle, Anim. Genet. source
The Abstract and Results examine Y1 and Y2 lineages in taurine cattle sampled in Europe and Africa. Searches for Y3a, Y3b, mtDNA I1, India, southern China, and Southeast Asia found no passage addressing the claimed distributions. Page numbers are unavailable in our copy. (LLM, conf=0.78)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationThe T3 haplogroup is mainly distributed in Eurasia; the T2 haplogroup is found in Anatolia and the Middle East; the T1 haplogroup is mainly distributed in Africa; and T4 haplogroup is mainly distributed in East Asia.
“The T3 haplogroup is mainly distributed in Eurasia; the T2 haplogroup is found in Anatolia and the Middle East; the T1 haplogroup is mainly distributed in Africa; and T4 haplogroup is mainly distributed in East Asia [14,26,27,33].”
Quote in the paperNot a substantial claim1 of 4 sources checked- cites [14] Edwards, 2007, Mitochondrial DNA Analysis Shows a Near Eastern Neolithic Origin for Domestic Cattle and No Indication of Domestication of European Aurochs, Proc. Biol. Sci. source
- cites [26] Caramelli, 2006, The Origin of European Cattle: Evidence from Modern and Ancient DNA, Proc. Natl. Acad. Sci. USA source
- cites [27] Troy, 2001, Genetic Evidence for Near-Eastern Origins of European Cattle, Nature source
- cites [33] Mannen, 2004, Independent Mitochondrial Origin and Historical Genetic Differentiation in North Eastern Asian Cattle, Mol. Phylogenet. Evol. source
May combine two claims.
PremisecitationMitochondrial DNA provides the most robust evidence supporting the Near Eastern origin; the Near East encompasses mtDNA taurine lineages T, T1, T2, T3, T5, exhibiting high genetic diversity.
“Mitochondrial DNA (mtDNA) provides the most robust evidence supporting the Near Eastern origin. The Near East encompasses mtDNA taurine lineages (T, T1, T2, T3, T5), exhibiting high genetic diversity [26,27].”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [26] Caramelli, 2006, The Origin of European Cattle: Evidence from Modern and Ancient DNA, Proc. Natl. Acad. Sci. USA source
The Abstract identifies mtDNA evidence for Near Eastern ancestry and lists four major Near Eastern haplogroups: T, T1, T2 and T3. It does not list T5 or call mtDNA the most robust evidence for a Near Eastern origin; it calls mtDNA the most reliable locus for studying ancient samples. The Conclusions also reject a single Near Eastern origin for European cattle. (LLM, conf=0.90)
Experimental — accuracy not yet measured - cites [27] Troy, 2001, Genetic Evidence for Near-Eastern Origins of European Cattle, Nature source
May combine two claims.
PremisecitationThe mitochondrial indicine I1 haplogroup spread east from northwestern India, with the I2 haplogroup sparsely distributed in India and southern China.
“The mitochondrial indicine I1 haplogroup spread east from northwestern India, with the I2 haplogroup sparsely distributed in India and southern China [7,29,30].”
Quote in the paperNot a substantial claim1 of 3 sources checked- cites [7] Singh, 2025, Mitogenome Diversity and Evolution of Bos indicus Cattle in India, Gene source
- cites [29] Lei, 2006, Origin and Phylogeographical Structure of Chinese Cattle, Anim. Genet. source
The passage labeled Abstract reports that I2 was rare in the sampled Chinese cattle and found only in Yunnan and Guizhou; it also suggests that I2 may have arrived from Indian zebu via Burma. It does not establish that I2 was sparsely distributed in India, or that I1 spread east from northwestern India. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [30] Lai, 2006, Genetic Diversity and Origin of Chinese Cattle Revealed by mtDNA D-Loop Sequence Variation, Mol. Phylogenet. Evol. source
May combine two claims.
PremisecitationThe Y2 haplogroup is distributed across Eurasia and Africa, while Y2a sub-haplogroup is dominant in Eurasian cattle and Y2b sub-haplogroup is found at a higher proportion in Northeast Asian and Qinghai-Tibetan Plateau cattle.
“The Y2 haplogroup is distributed across Eurasia and Africa, whiel Y2a sub-haplogroup is dominant in Eurasian cattle and Y2b sub-haplogroup is found having a higher proportion in Northeast Asian and Qinghai-Tibetan Plateau cattle [9,34].”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [9] Chen, 2018, Whole-Genome Resequencing Reveals World-Wide Ancestry and Adaptive Introgression Events of Domesticated Cattle in East Asia, Nat. Commun. source
The Results (Paternal and maternal phylogenetic analyses) and Discussion report Y2a in Northwest Chinese and Central-South European cattle, and Y2b as predominant in Northeast Asian and Tibetan Plateau cattle. They do not establish that Y2a dominates Eurasian cattle generally or that Y2 is distributed in Africa; the African haplogroup mentioned in the Results is maternal T1, not Y2. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [34] Anderung, 2005, Cattle Domestication in the Near East Was Followed by Hybridization with Aurochs Bulls in Europe, Proc. Biol. Sci.
Not checked in the free run.
May combine two claims.
PremisecitationThe divergence of Y3a from Y3b, as well as sub-haplogroups within indicine mitogenomes, occurred approximately 23,100-24,800 years ago, while South Asian indicine ancestry diverged from East Asian and African indicine ancestry approximately 10,300-40,100 and 11,800 years ago, respectively.
“The divergence of Y3a from Y3b, as well as sub-haplogroups within indicine mitogenomes, occurred approximately 23,100–24,800 years ago, while South Asian indicine ancestry diverged from East Asian and African indicine ancestry approximately 10,300–40,100 and 11,800 years ago, respectively [9,10].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [9] Chen, 2018, Whole-Genome Resequencing Reveals World-Wide Ancestry and Adaptive Introgression Events of Domesticated Cattle in East Asia, Nat. Commun. source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured - cites [10] Chen, 2023, Global Genetic Diversity, Introgression, and Evolutionary Adaptation of Indicine Cattle Revealed by Whole Genome Sequencing, Nat. Commun. source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationMoving toward peripheral regions such as Europe and Africa, mtDNA taurine genetic diversity gradually decreases: modern European cattle primarily carry the T3 lineage, while the T1 lineage is predominantly distributed in Africa.
“Moving toward peripheral regions such as Europe and Africa, this genetic diversity gradually decreases: modern European cattle primarily carry the taurine T3 lineage, while the T1 lineage is predominantly distributed in Africa [26,27].”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [26] Caramelli, 2006, The Origin of European Cattle: Evidence from Modern and Ancient DNA, Proc. Natl. Acad. Sci. USA source
The Abstract says European cattle belong almost exclusively to the T3 haplogroup, and the section on African cattle contribution says T1 is almost fixed across North Africa. But that section reports slightly higher nucleotide diversity in North Africa than in the Middle East or Anatolia, so the claimed gradual decrease toward Africa is not supported. Page numbers are unavailable in our copy. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [27] Troy, 2001, Genetic Evidence for Near-Eastern Origins of European Cattle, Nature source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationThe Simmental breed emerged in the Middle Ages in the Simme Valley of Switzerland and resulted from the crossbreeding of large German cattle with smaller Swiss indigenous cattle.
“For example, the Simmental breed, which emerged in the Middle Ages in the Simme Valley of Switzerland, resulted from the crossbreeding of large German cattle with smaller Swiss indigenous cattle [43,44].”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [43] Perisic, 2009, Simmental Cattle Breed in Different Production Systems, Bio Anim. Husb. source
The sections on Simmental populations in Europe and improving the breed describe modern crossbreeding, including with Holstein, but do not address the breed’s historical origin. Searches for the Middle Ages, Simme Valley, and a cross between large German and smaller indigenous Swiss cattle found no passage supporting those details. (LLM, conf=0.74)
Experimental — accuracy not yet measured - cites [44] Heaton, 2021, A Reference Genome Assembly of Simmental Cattle, Bos taurus Taurus, J. Hered. source
May combine two claims.
PremisecitationDuring the late Neolithic (4000-5000 years ago), taurine cattle were introduced to East Asia from West Asia, carrying T3 and the East Asian-specific T4 haplogroups.
“During the late Neolithic (4000–5000 years ago), taurine cattle were introduced to East Asia from West Asia, carrying T3 and the East Asian-specific T4 haplogroups [9,33,55,56,57].”
Quote in the paperNot a substantial claim1 of 5 sources checked- cites [9] Chen, 2018, Whole-Genome Resequencing Reveals World-Wide Ancestry and Adaptive Introgression Events of Domesticated Cattle in East Asia, Nat. Commun. source
The Introduction (page unavailable) says archaeological evidence suggests taurine cattle may have been imported from West Asia during the late Neolithic, 5000–4000 years before present. The Results section on paternal and maternal phylogenetic analyses (page unavailable) finds T3 common in modern East Asian taurine cattle and T4 in one Tibetan individual, but does not establish that the cattle introduced in that period carried both haplogroups or that T4 is East Asian-specific. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [33] Mannen, 2004, Independent Mitochondrial Origin and Historical Genetic Differentiation in North Eastern Asian Cattle, Mol. Phylogenet. Evol. source
- cites [55] Cai, 2014, The Origins of Chinese Domestic Cattle as Revealed by Ancient DNA Analysis, J. Archaeol. Sci. source
- cites [56] Xia, 2019, Comprehensive Analysis of the Mitochondrial DNA Diversity in Chinese Cattle, Anim. Genet. source
- cites [57] Li, 2013, Paternal Origins of Chinese Cattle, Anim. Genet. source
May combine two claims.
PremisecitationA branch of the Indian zebu I1 haplogroup formed the Chinese zebu I1a sub-haplogroup, while the genome-wide nucleotide diversity was higher in East Asian indicine cattle than in South Asian indicine cattle.
“A branch of the Indian zebu I1 haplogroup formed the Chinese zebu I1a sub-haplogroup, while the genome-wide nucleotide diversity was higher in East Asian indicine cattle than in South Asian indicine cattle [10].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [10] Chen, 2023, Global Genetic Diversity, Introgression, and Evolutionary Adaptation of Indicine Cattle Revealed by Whole Genome Sequencing, Nat. Commun. source
May combine two claims.
PremisecitationKouprey-like and gayal-like ancestries accounted for 3.2% and 1.4% in Chinese indicine genomes.
“In addition, kouprey-like and gayal-like ancestries accounted for 3.2% and 1.4% in Chinese indicine genomes [67].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [67] Dai, 2023, A Chinese Indicine Pangenome Reveals a Wealth of Novel Structural Variants Introgressed from Other Bos Species, Genome Res. source
May combine two claims.
PremisecitationA previous study reported an expansion of cattle carrying the I1a sub-haplogroup around 3730 years ago, indicating a marked increase in zebu cattle dispersal and exchange frequency beginning approximately 4000 years ago.
“A previous study also reported an expansion of cattle carrying I1a sub-haplogroup around 3730 years ago [10], indicating a marked increase in zebu cattle dispersal and exchange frequency beginning approximately 4000 years ago.”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [10] Chen, 2023, Global Genetic Diversity, Introgression, and Evolutionary Adaptation of Indicine Cattle Revealed by Whole Genome Sequencing, Nat. Commun. source
The Results (Demographic history of indicine cattle; page unavailable) report an I1a population increase at approximately 3.73 kya. The Discussion links I1a expansion to indicine entry into East Asia around 3–5 kya. The paper does not establish a marked increase in the frequency of cattle dispersal and exchange beginning around 4 kya. (LLM, conf=0.87)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationZebu cattle originated in India and reached Southeast and East Asia approximately 5500-2500 years ago.
“Zebu cattle originated in India and reached Southeast and East Asia approximately 5500–2500 years ago [59].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [59] Utsunomiya, 2019, Genomic Clues of the Evolutionary History of Bos indicus Cattle, Anim. Genet. source
The “Putative domestication sites and events” section dates the first spread to Southeast Asia to about 5500–4000 years before present, and “Departures to East Asia” dates entry into East Asia to 3500–2500 years before present. But the paper places the probable domestication site in the Indus Valley in modern-day Pakistan, rather than stating that zebu originated in India. (LLM, conf=0.88)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationEurasian taurine ancestry and the Y2a sub-haplogroup predominated in cattle from Northwest China and south-central Europe.
“In contrast, Eurasian taurine ancestry and the Y2a sub-haplogroup predominated in cattle from Northwest China and south-central Europe [9].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [9] Chen, 2018, Whole-Genome Resequencing Reveals World-Wide Ancestry and Adaptive Introgression Events of Domesticated Cattle in East Asia, Nat. Commun. source
May combine two claims.
PremisecitationThey entered Mongolia and northern China, before spreading from Northeast China to Japan via the Korean Peninsula.
“They entered Mongolia and northern China [58], before spreading from Northeast China to Japan via the Korean Peninsula.”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [58] Zhang, N., Shao, X., Guo, Y., Zhang, X., Zhou, Y., Yuan, J., Tang, Z., Hu, S., Minyaev, S.S., and Cai, D. (2023). Ancient Mitochondrial Genomes Provide New Clues to the Origin of Domestic Cattle in China. Genes, 14. source
The Discussion reports that T4 cattle spread from the Eurasian steppe to China and identifies ancient T4 cattle in the eastern Eurasian steppe and northern China. It does not establish that they entered Mongolia specifically. The Japan-via-Korea clause follows the citation and is not judged here. (LLM, conf=0.82)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationTibetan and Northeast Asian cattle breeds share an East Asian taurine ancestry component, and the Y2b sub-haplogroup was likely maintained by geographical barriers.
“Tibetan and Northeast Asian cattle breeds share an East Asian taurine ancestry component, and the Y2b sub-haplogroup was likely maintained by geographical barriers [9].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [9] Chen, 2018, Whole-Genome Resequencing Reveals World-Wide Ancestry and Adaptive Introgression Events of Domesticated Cattle in East Asia, Nat. Commun. source
May combine two claims.
PremisecitationZebu cattle spread westward from the Abyssinian region across the continent and penetrated south to Zambia, forming two major hybrid zones of taurine and zebu cattle in West and Southern Africa.
“Zebu cattle spread westward from the Abyssinian region across the continent and penetrated south to Zambia, forming two major hybrid zones of taurine and zebu cattle in West and Southern Africa [48,49,50].”
Quote in the paperNot a substantial claim1 of 3 sources checked- cites [48] Gebrehiwot, N.Z., Strucken, E.M., Aliloo, H., Marshall, K., and Gibson, J.P. (2020). The Patterns of Admixture, Divergence, and Ancestry of African Cattle Populations Determined from Genome-Wide SNP Data. BMC Genom., 21. source
The Discussion (Genetic diversity and relationships; page unavailable) reports taurine–indicine admixture in West and Southern African cattle, supporting the claim’s broad geographic admixture point. It does not describe a westward spread from Abyssinia, penetration south to Zambia, or two major hybrid zones. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [49] Hanotte, 2000, Geographic Distribution and Frequency of a Taurine Bos taurus and an Indicine Bos indicus Y Specific Allele amongst Sub-Saharan African Cattle Breeds, Mol. Ecol. source
- cites [50] Kim, 2020, The Mosaic Genome of Indigenous African Cattle as a Unique Genetic Resource for African Pastoralism, Nat. Genet. source
May combine two claims.
PremisecitationThe introgression proportions of banteng, gaur, and yak ancestries into East Asian indicine or Tibetan taurine cattle ranged from 1.13% to 10.21%, 2.06% to 9.98%, and 0.05% to 2.94%, respectively.
“The introgression proportions of banteng (Bos javanicus), gaur (Bos gaurus), and yak (Bos mutus) ancestries into East Asian indicine or Tibetan taurine cattle ranged from 1.13% to 10.21%, 2.06% to 9.98%, and 0.05% to 2.94%, respectively [9,10].”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [9] Chen, 2018, Whole-Genome Resequencing Reveals World-Wide Ancestry and Adaptive Introgression Events of Domesticated Cattle in East Asia, Nat. Commun. source
The Results section on yak introgression reports the claimed 0.05–2.94% range for nine Tibetan taurine cattle. But the Results section on B. javanicus introgression gives a banteng-ancestry range of 2.38–3.84%, not 1.13–10.21%. Our copy does not report the claimed gaur-ancestry range of 2.06–9.98%. No page numbers are available in the indexed passages. (LLM, conf=0.93)
Experimental — accuracy not yet measured - cites [10] Chen, 2023, Global Genetic Diversity, Introgression, and Evolutionary Adaptation of Indicine Cattle Revealed by Whole Genome Sequencing, Nat. Commun. source
The Results section, “The indicine adaptation to the tropical, humid Asian environment” (page unavailable), gives the stated banteng and gaur ancestry ranges for East Asian indicine genomes. The copy includes yak genomes in the analysis, but the searched passages do not report the claimed 0.05%–2.94% yak ancestry range in Tibetan taurine cattle. (LLM, conf=0.88)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationApproximately 7000 years ago, taurine cattle were distributed in southern Egypt and across the African continent, established by the T1 mtDNA lineage, which is now characteristic of African cattle.
“Approximately 7000 years ago, taurine cattle were distributed in southern Egypt and across the African continent, established by the T1 mtDNA lineage, which is now characteristic of African cattle [26,37,38,45].”
Quote in the paperNot a substantial claim3 of 4 sources checked- cites [26] Caramelli, 2006, The Origin of European Cattle: Evidence from Modern and Ancient DNA, Proc. Natl. Acad. Sci. USA source
The section on African cattle contribution says T1 is nearly fixed in sampled North African cattle and is a distinctive feature of African breeds. It does not establish that taurine cattle were distributed in southern Egypt or across Africa approximately 7,000 years ago. The 7,000-year date in the paper concerns aurochs specimens from southern Italy, not African cattle. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [37] Royo, 2010, Y-Specific Microsatellites Reveal an African Subfamily in Taurine (Bos taurus) Cattle, Anim. Genet. source
The Discussion (page not specified in our copy) refers to “African T1 mtDNA haplotypes” and distinctive mtDNA variation in African taurine cattle. It does not establish that taurine cattle were distributed in southern Egypt and across Africa approximately 7,000 years ago, or that the T1 lineage demonstrates that historical distribution. (LLM, conf=0.82)
Experimental — accuracy not yet measured - cites [38] Bonfiglio, S., Ginja, C., De Gaetano, A., Achilli, A., Olivieri, A., Colli, L., Tesfaye, K., Agha, S.H., Gama, L.T., and Cattonaro, F. (2012). Origin and Spread of Bos taurus: New Clues from Mitochondrial Genomes Belonging to Haplogroup T1. PLoS ONE, 7. source
The Introduction (page unavailable) says T1 is almost fixed in modern African cattle, and the Discussion, ‘The origin of haplogroup T1’ (page unavailable), discusses possible routes by which domesticated taurine cattle entered Africa, including a route to Egypt. Neither passage establishes that cattle were distributed in southern Egypt and across the African continent approximately 7,000 years ago; the paper presents the migration routes as a possible explanation, not a dated finding. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [45] Hanotte, 2011, Domesticating Animals in Africa: Implications of Genetic and Archaeological Findings, J. World Prehist.
Not checked in the free run.
May combine two claims.
PremisecitationZebu cattle reached the Central Plains of China around 3500 years ago, forming a convergence zone of taurine and zebu cattle.
“Zebu cattle reached the Central Plains of China around 3500 years ago, forming a convergence zone of taurine and zebu cattle [55,62,63].”
Quote in the paperNot a substantial claim2 of 3 sources checked- cites [55] Cai, 2014, The Origins of Chinese Domestic Cattle as Revealed by Ancient DNA Analysis, J. Archaeol. Sci. source
- cites [62] Zhang, W., Gao, X., Zhang, Y., Zhao, Y., Zhang, J., Jia, Y., Zhu, B., Xu, L., Zhang, L., and Gao, H. (2018). Genome-Wide Assessment of Genetic Diversity and Population Structure Insights into Admixture and Introgression in Chinese Indigenous Cattle. BMC Genet., 19. source
The Background (page unavailable) says indicine-lineage cattle first appeared in southern and central China at least by 1500 BC, roughly 3500 years ago. The Discussion, “Admixture in central breeds and natural barriers” (page unavailable), supports admixture of taurine and indicine lineages in central breeds, but does not establish that the convergence zone formed when zebu cattle arrived. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [63] Cai, Y., Jiao, T., Lei, Z., Liu, L., and Zhao, S. (2018). Maternal Genetic and Phylogenetic Characteristics of Domesticated Cattle in Northwestern China. PLoS ONE, 13. source
The Discussion (Maternal structures of native cattle in northwest China; page unavailable) describes areas near Central China as an intersection of taurine and indicine cattle, including hybrids. It does not date zebu cattle’s arrival in the Central Plains to around 3500 years ago. (LLM, conf=0.87)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationAncient Moroccan wild ox samples exhibit a closer kinship to the African taurine ancestry than to the European taurine ancestry, while African taurine cattle possess ~20% ancestry attributed to African aurochs.
“Ancient Moroccan wild ox samples exhibit a closer kinship to the African taurine ancestry than to the European taurine ancestry, while African taurine cattle possess ~20% ancestry attributed to African aurochs, providing a genetic signature distinct from their European counterparts [46].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [46] Kim, 2023, Inference of Admixture Origins in Indigenous African Cattle, Mol. Biol. Evol. source
The Results section reports that Moroccan aurochs have the highest genetic affinity with the African taurine breeds Muturu and N’Dama, and the Discussion says they have higher affinity with African than Eurasian taurines. The paper estimates roughly 10–20% admixture from a basal taurine lineage, but the Discussion explicitly says African aurochs introgression is unlikely to explain all of that signal. It therefore does not establish that the full ~20% came from African aurochs. (LLM, conf=0.88)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationCompared with commercial dairy breeds, genes related to body size (TIGAR, CCND2, CSMD3) underwent strong selection in Fjällnära of northern Sweden, indicating that small body size is an adaptive strategy for food shortages in cold environments.
“Furthermore, compared with commercial dairy breeds, genes related to body size (TIGAR, CCND2, CSMD3) underwent strong selection in Fjällnära of northern Sweden, indicating that small body size is an adaptive strategy for food shortages in cold environments [110].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [110] Ghoreishifar, 2020, Signatures of Selection Reveal Candidate Genes Involved in Economic Traits and Cold Acclimation in Five Swedish Cattle Breeds, Genet. Sel. Evol. source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationIn the United States, the establishment of the "Certified Angus Beef" brand in 1978 further focused the breeding objectives for intramuscular fat content, achieving standardized and premium product quality.
“In the United States, the establishment of the “Certified Angus Beef” brand in 1978 further focused the breeding objectives for intramuscular fat content, achieving standardized and premium product quality [80].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [80] Mulim, 2026, Genomic Structure and Selection History across Angus Populations Worldwide: Insights from ROH, Selection Mapping, and Functional Analyses, Mamm. Genome source
The Introduction (page unavailable) says branded beef programs partly facilitated Angus selective breeding and describes the breed as valued for marbled, high-quality beef. It does not identify Certified Angus Beef, give a 1978 establishment date, or say that this brand focused US breeding on intramuscular fat and achieved standardized premium quality. (LLM, conf=0.82)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationTo enhance productivity, particularly heat tolerance and disease resistance, zebu breeds such as Kankrej, Ongole, and Gir were introduced from 1813 onwards, later yielding the Brahman favoured in tropical regions and indicine × taurine crossbreds such as the Beefmaster.
“To enhance productivity, particularly heat tolerance and disease resistance, zebu breeds such as Kankrej, Ongole, and Gir were introduced from 1813 onwards, later yielding the Brahman favoured in tropical regions and indicine × taurine crossbreds such as the Beefmaster [59,68].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [59] Utsunomiya, 2019, Genomic Clues of the Evolutionary History of Bos indicus Cattle, Anim. Genet. source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured - cites [68] Crum, T.E., Schnabel, R.D., Decker, J.E., and Taylor, J.F. (2021). Taurine and Indicine Haplotype Representation in Advanced Generation Individuals From Three American Breeds. Front. Genet., 12. source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationGRIA4 has been reported as a candidate gene for heat tolerance in Australian Holsteins, enriched in the glutamatergic synapse pathway, suggesting that GRIA4 mediates response to both cold and heat stress through thermoregulation.
“GRIA4 has been reported as a candidate gene for heat tolerance in Australian Holsteins, enriched in the glutamatergic synapse pathway [106], suggesting that GRIA4 mediates response to both cold and heat stress through thermoregulation.”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [106] Cheruiyot, 2021, New Loci and Neuronal Pathways for Resilience to Heat Stress in Cattle, Sci. Rep. source
May combine two claims.
PremisecitationAncient DNA studies show that cattle introduced to the Americas in the early 17th century came from diverse regions, including European cattle from the Iberian Peninsula (haplogroup T3) and African cattle (sub-haplogroup T1b) brought by the slave trade.
“Furthermore, ancient DNA studies show that cattle introduced to the Americas in the early 17th century came from diverse regions. These included European cattle from the Iberian Peninsula (haplogroup T3) and African cattle (sub-haplogroup T1b) brought by the slave trade [76].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [76] Delsol, 2023, Ancient DNA Confirms Diverse Origins of Early Post-Columbian Cattle in the Americas, Sci. Rep. source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationNellore is the main beef cattle breed produced in Brazil, and more than 80% of Brazil's beef cattle population comprises purebred or hybrid Nellore cattle.
“Nellore is the main beef cattle breed produced in Brazil, and more than 80% of Brazil’s beef cattle population comprises purebred or hybrid Nellore cattle [79].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [79] Nunes, 2024, Beef Production and Carcass Evaluation in Brazil, Anim. Front. source
May combine two claims.
PremisecitationBrazilian and American breeds such as Creole and Nellore share similar genetic backgrounds with southern European cattle; they carry the T3 and T1 mitochondrial haplogroups and exhibit indicine ancestry.
“Brazilian and American breeds such as Creole and Nellore share similar genetic backgrounds with southern European cattle. They carry the T3 and T1 mitochondrial haplogroups and exhibit indicine ancestry [54,69,70,71,72,73,74,75].”
Quote in the paperNot a substantial claim5 of 8 sources checked- cites [54] McTavish, 2013, New World Cattle Show Ancestry from Multiple Independent Domestication Events, Proc. Natl. Acad. Sci. USA source
- cites [69] Ginja, 2010, Origins and Genetic Diversity of New World Creole Cattle: Inferences from Mitochondrial and Y Chromosome Polymorphisms, Anim. Genet. source
- cites [70] Miretti, 2004, Predominant African-Derived mtDNA in Caribbean and Brazilian Creole Cattle Is Also Found in Spanish Cattle (Bos taurus), J. Hered. source
- cites [71] Bravi, 2006, African Matrilineages in American Creole Cattle: Evidence of Two Independent Continental Sources, Anim. Genet. source
The Abstract reports Western European T3 and African T1 mitochondrial haplogroups in American Creole cattle, and the paper identifies T1a in Brazilian Creole and Nelore cattle. It also links American Creole cattle with a southern Spanish breed. But its mitochondrial analysis does not establish indicine ancestry; the Abstract says none of the sequences were Bos indicus types. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [72] Ginja, 2019, The Genetic Ancestry of American Creole Cattle Inferred from Uniparental and Autosomal Genetic Markers, Sci. Rep. source
The Results (Phylogenetic relationships; page unavailable) report T3 in Creole and American indicine cattle and T1 in Creole cattle and the sampled American indicine breeds. The Results (Genetic structure; page unavailable) also find indicine contributions in many Creoles and Portuguese ancestry in all Creoles. But the claim overgeneralizes their similarity to southern European cattle: shared maternal haplogroups do not establish similar overall genetic backgrounds, and the paper treats indicine breeds, including the sampled Nelore, as a distinct breed group. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [73] Ward, 2024, Genomic Insights into the Population History and Adaptive Traits of Latin American Criollo Cattle, R. Soc. Open Sci. source
The Results (Population differentiation, genetic structure and admixture; page not provided) report that Criollo cattle cluster with Iberian taurine cattle and show varying indicine admixture. The Introduction reports a T1-c mitochondrial haplotype in Criollo cattle. The passages do not establish T3 carriage or extend these findings to Nellore cattle; a search for Nellore and T3 found no supporting passage. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [74] Adam, 2023, Whole Genome Sequencing Reveals Signals of Adaptive Admixture in Creole Cattle, Sci. Rep. source
The Results (Population structure and genetic relationship analyses; page unavailable) place the studied Criollo breeds close to Iberian cattle and report indicine ancestry in Guadeloupe Creole cattle. They also say the other Criollo breeds have very little indicine ancestry and a higher proportion of northern European ancestry. The paper does not establish the claimed T1 and T3 mitochondrial haplogroups or the same genetic pattern for Nellore. (LLM, conf=0.87)
Experimental — accuracy not yet measured - cites [75] Verardo, 2024, Exploring the Genetic Origin of Brazilian Locally Adapted Breeds: Admixture, Population History and Relationship with Portuguese and Indicine Cattle, Livest. Sci. source
Section 4.4 (Breed composition; page unavailable) describes Portuguese influence on Brazilian locally adapted cattle and indicine ancestry in those breeds and Nellore. But the paper does not identify T1 or T3 mitochondrial haplogroups, and its PCA results distinguish Nellore from the Portuguese Iberian and Brazilian locally adapted groups rather than showing that Nellore shares their genetic background. (LLM, conf=0.88)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationBeef production exhibits a significant geographic concentration, primarily within North and South America, with Brazil and the United States standing out as major global players in both production and consumption.
“Beef production exhibits a significant geographic concentration, primarily within North and South America, with Brazil and the United States standing out as major global players in both production and consumption [77,78,79].”
Quote in the paperNot a substantial claim2 of 3 sources checked- cites [77] Lal Ranabhat, C. (2021). Beef Consumption Pattern in Brazil. Meat and Nutrition, IntechOpen. source
- cites [78] Castonguay, 2023, Navigating Sustainability Trade-Offs in Global Beef Production, Nat. Sustain. source
The 'Beef without borders' section (page unavailable) discusses beef production in North and Latin America, and the paper identifies production areas in Brazil and the United States. It does not establish that production is concentrated primarily in the Americas or that Brazil and the United States are major global players in both production and consumption; its consumption discussion is global rather than country-specific. (LLM, conf=0.76)
Experimental — accuracy not yet measured - cites [79] Nunes, 2024, Beef Production and Carcass Evaluation in Brazil, Anim. Front. source
The Introduction describes Brazil as a top world beef producer and exporter, and Beef Market Statistics reports Brazilian beef consumption. The paper does not establish that beef production is concentrated in North and South America or that the United States is a major global player in both production and consumption; it mentions the United States only as a destination for Brazilian exports. (LLM, conf=0.86)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationThe PRLR gene is linked to the short, sleek coat phenotype and was found to be under selection in Latin American Criollo cattle.
“The PRLR gene (prolactin receptor), which is linked to the short, sleek coat phenotype, was found to be under selection in Latin American Criollo cattle [73].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [73] Ward, 2024, Genomic Insights into the Population History and Adaptive Traits of Latin American Criollo Cattle, R. Soc. Open Sci. source
May combine two claims.
PremisecitationThis insertion correlates with an increased number of O-linked glycosylation sites and confers resistance to M. tuberculosis in Hainan cattle.
“This insertion correlates with an increased number of O-linked glycosylation sites and confers resistance to M. tuberculosis in Hainan cattle [101].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [101] Xia, 2023, Structural Variation and Introgression from Wild Populations in East Asian Cattle Genomes Confer Adaptation to Local Environment, Genome Biol. source
The Results section identifies the 108-bp SPN insertion in Hainan cattle and reports altered M. tuberculosis uptake in transfected macrophage cells. The Discussion hypothesizes that the insertion increases O-linked glycosylation sites and may lower susceptibility to bovine tuberculosis; it does not establish that the insertion confers resistance to M. tuberculosis in Hainan cattle. (LLM, conf=0.90)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationTibetan taurine cattle displayed significant selection signals in LETM1, TXNRD2, and STUB1, which may promote hypoxia adaptation by modulating mitochondrial function and HIF-1α stability.
“Tibetan taurine cattle displayed significant selection signals in LETM1, TXNRD2, and STUB1, which may promote hypoxia adaptation by modulating mitochondrial function and HIF-1α stability [95].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [95] Zhang, Y., Hu, Y., Wang, X., Jiang, Q., Zhao, H., Wang, J., Ju, Z., Yang, L., Gao, Y., and Wei, X. (2019). Population Structure, and Selection Signatures Underlying High-Altitude Adaptation Inferred From Genome-Wide Copy Number Variations in Chinese Indigenous Cattle. Front. Genet., 10. source
May combine two claims.
PremisecitationTemperament traits such as flight speed in beef cattle are heritable and directly impact an animal's response to human handling.
“Behaviorally, temperament traits such as flight speed in beef cattle are known to be heritable [132,133], directly impacting an animal’s response to human handling during milking, transport, and calving.”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [132] Pinto, 2025, A Systematic Review with Meta-Analysis of Heritability Estimates for Temperament-Related Traits in Beef and Dairy Cattle Populations, J. Anim. Breed. Genet. source
- cites [133] Alvarenga, 2023, Unraveling the Phenotypic and Genomic Background of Behavioral Plasticity and Temperament in North American Angus Cattle, Genet. Sel. Evol. source
The Conclusions report that temperament in beef cattle is moderately to highly heritable, and Methods > Data defines its temperament scores as responses to handling in a chute (pages unavailable). The paper does not establish heritability specifically for flight speed; its handling evidence also does not address milking, transport, or calving. (LLM, conf=0.84)
Experimental — accuracy not yet measured
May combine two claims.
Premisecitation7293 SVs in Tibetan cattle originated from yak introgression, including an upstream regulatory variant of EGLN1 and intronic deletions in PPP1R14C and NFE2L2.
“A structural variation analysis further revealed that 7293 SVs in Tibetan cattle originated from yak introgression. These variants included an upstream regulatory variant of EGLN1 and intronic deletions in PPP1R14C and NFE2L2, which are associated with angiogenesis and glucose transporter 1 upregulation, respectively [89].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [89] Xia, 2025, Structural Variations Associated with Adaptation and Coat Color in Qinghai-Tibetan Plateau Cattle, Adv. Sci. source
The Results (‘Yak Introgression’; page not supplied) identify 7,293 SVs as possibly derived from yak, with 5,642 subsequently classified as probable introgressions. The same section reports SVs upstream of EGLN1 and intronic deletions in PPP1R14C and NFE2L2. The claim overstates the certainty of yak origin for all 7,293 and calls the EGLN1 variant regulatory, whereas the passage establishes its location upstream of the gene, not a regulatory effect. (LLM, conf=0.88)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationGenomic signals of recent selection and adaptive introgression from banteng and gaur into East Asian indicine cattle have been identified; these candidate genes are involved in heat-sensing proteins (TRPA1), paracellular water transport and urine concentration regulation (ILDR), Ca2+ homeostasis (CASR), and resistance to tick-borne diseases (HBA, HBA1, HBQ1, HBM).
“Genomic signals of recent selection and adaptive introgression from banteng and gaur into East Asian indicine cattle have been identified. These candidate genes are involved in multiple functions: heat-sensing proteins (TRPA1), paracellular water transport and urine concentration regulation (ILDR), Ca2+ homeostasis (CASR), and resistance to tick-borne diseases (HBA, HBA1, HBQ1, HBM) [10].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [10] Chen, 2023, Global Genetic Diversity, Introgression, and Evolutionary Adaptation of Indicine Cattle Revealed by Whole Genome Sequencing, Nat. Commun. source
Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationPrecise characterization of SVs has linked a 108 bp insertion in SPN to M. tuberculosis resistance and associated specific upstream variants of EGLN1 to high-altitude adaptation.
“Furthermore, precise characterization of SVs has linked a 108 bp insertion in SPN to M. tuberculosis resistance and associated specific upstream variants of EGLN1 to high-altitude adaptation [89,101].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [89] Xia, 2025, Structural Variations Associated with Adaptation and Coat Color in Qinghai-Tibetan Plateau Cattle, Adv. Sci. source
The Introduction mentions EGLN1 only as a candidate identified by previous SNP studies, not as a gene with upstream SVs characterized in this paper. The Results identify other SVs associated with high-altitude adaptation, but searches for SPN, a 108-bp insertion, tuberculosis resistance, and upstream EGLN1 variants found no passage addressing either specific claim. Page numbers were not available in our copy. (LLM, conf=0.76)
Experimental — accuracy not yet measured - cites [101] Xia, 2023, Structural Variation and Introgression from Wild Populations in East Asian Cattle Genomes Confer Adaptation to Local Environment, Genome Biol. source
The Results section (‘Function of an insertion in the exon of SPN gene for binding of Mycobacterium tuberculosis’; page unavailable) identifies the 108-bp SPN insertion and reports increased bacterial uptake in a macrophage experiment. The Discussion (page unavailable) presents reduced tuberculosis susceptibility as a hypothesis, not an established resistance effect. No passage found links upstream EGLN1 variants to high-altitude adaptation (searched: ‘EGLN1 upstream variants high-altitude adaptation’ and ‘high altitude EGLN1’). (LLM, conf=0.86)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationAzam et al. identified 7.5 Mb of high-confidence non-reference unique insertions and 41 Mb of non-reference novel sequences in Indian cattle, enriched in immune-related gene clusters.
“Similarly, Azam et al. [185,186] identified 7.5 Mb of high-confidence non-reference unique insertions (NUIs) and 41Mb of non-reference novel sequences in Indian cattle. These insertions are enriched in immune-related gene clusters, further highlighting that indicine immune systems possess a genomic repertoire distinct from the taurine reference genome [186].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [185] Azam, 2025, Constructing a Draft Indian Cattle Pangenome Using Short-Read Sequencing, Commun. Biol. source
The Abstract reports approximately 41 Mb of non-reference novel sequences in Indian cattle. Results (GO enrichment analysis; no page available) reports immune-related enrichment for genes associated with core-like NRNS contigs, but not enrichment of the insertions in immune-related gene clusters. The Results table on NRNS presence and absence gives 7,165,905 bases of private insertions; the cited paper does not identify 7.5 Mb of high-confidence non-reference unique insertions. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [186] Azam, 2025, Advancing the Indian Cattle Pangenome: Characterizing Non-Reference Sequences in Bos indicus, J. Anim. Sci. Biotechnol. source
The Abstract Results report 6,844 high-confidence NUIs spanning 7.57 Mb in Indian Bos indicus breeds, supporting the 7.5 Mb figure. They report 8 Mb and 17.7 Mb of novel sequence by two methods, not 41 Mb. The Results section on the functional impact of common insertions reports enrichment for synaptic transmission, cell organization and adhesion, not immune-related gene clusters. (LLM, conf=0.90)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationThe linear model inherently obscures sequences present in other individuals but absent in the reference, thereby introducing significant reference bias in variant calling and trait association.
“The linear model inherently obscures sequences present in other individuals but absent in the reference, thereby introducing significant reference bias in variant calling and trait association [180].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [180] Smith, 2023, The Bovine Pangenome Consortium: Democratizing Production and Accessibility of Genome Assemblies for Global Cattle Breeds and Other Bovine Species, Genome Biol. source
In “Why a pangenome?” (page unavailable), the paper says a single reference misses genetic variation, that insertions absent from the reference are difficult to detect, and that reference bias can cause mapping and genotyping errors. This supports the variant-calling part of the claim, but the passages do not establish reference bias in trait association. (LLM, conf=0.84)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationDai et al. identified 148.5 Mb of novel sequences in Chinese indicine cattle, enriched in gene families related to immune response and sensory perception, likely resulting from introgression from wild relatives such as banteng and gaur.
“For instance, Dai et al. [67] identified 148.5 Mb of novel sequences in Chinese indicine cattle, which are enriched in gene families related to immune response and sensory perception, likely resulting from introgression from wild relatives such as banteng and gaur.”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [67] Dai, 2023, A Chinese Indicine Pangenome Reveals a Wealth of Novel Structural Variants Introgressed from Other Bos Species, Genome Res. source
The Abstract reports 148.5 Mb of novel sequence in the Chinese indicine multiassembly graph. Results (Constructing a Chinese indicine multiassembly graph) describe genes predicted from nonreference sequences with immune-response and olfactory functions; the Abstract separately identifies banteng-like and gaur-like introgressed fragments. The paper does not establish that the 148.5 Mb of novel sequence as a whole is enriched for those gene families or likely resulted from that introgression. (LLM, conf=0.86)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationGraph pangenomes represent genomes as network structures, allowing for the simultaneous storage of multiple haplotypes and complex nested variations.
“Unlike linear concatenations, graph pangenomes represent genomes as network structures (nodes and edges), allowing for the simultaneous storage of multiple haplotypes and complex nested variations [183,184].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [183] Liu, 2025, Exploring Cattle Structural Variation in the Era of Long Reads, Pangenome Graphs, and near-Complete Assemblies, J. Anim. Sci. Biotechnol. source
The Pangenome graphs section describes shared sequences as graph nodes, alternative haplotypes as paths, and structural variants as bubbles. It supports representing multiple haplotypes and types of variation in one graph, but does not specifically address nested variations. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [184] Crysnanto, 2021, Novel Functional Sequences Uncovered through a Bovine Multiassembly Graph, Proc. Natl. Acad. Sci. USA source
The graph-construction passages describe nodes and edges traversed by different assembly paths, and the structural-variation section reports multiple alleles within graph bubbles. That supports representing multiple genome sequences and variants in one graph. The Discussion says this implementation contains only insertions and deletions and cannot accurately integrate inversions or translocations; our copy does not establish the claimed capacity for complex nested variations. (LLM, conf=0.87)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationTLR2 contributes to enhanced innate immune signaling and stronger anti-Mycobacterium bovis responses in Brown Swiss cattle.
“TLR2, a key pattern recognition receptor for mycobacterial antigens, contributes to enhanced innate immune signaling and stronger anti-Mycobacterium bovis responses in Brown Swiss cattle [163].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [163] Bartens, M.-C., Gibson, A.J., Etherington, G.J., Di Palma, F., Holder, A., Werling, D., and Willcocks, S. (2021). Single Nucleotide Polymorphisms in the Bovine TLR2 Extracellular Domain Contribute to Breed and Species-Specific Innate Immune Functionality. Front. Immunol., 12. source
The Results section reports stronger CXCL8 responses in Brown Swiss than Holstein Friesian macrophages to a TLR2 agonist and a mycobacterial protein. But it explicitly reports no significant between-breed difference in response to M. bovis BCG; the Brown Swiss response was significantly greater only than its own untreated control. The study did not test responses to virulent M. bovis. (LLM, conf=0.88)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationA 2 Mb heterozygous inversion and two translocations harboring KIT were associated with the gray coat phenotype in Tibetan cattle, and the inversion haplotype originated from South Asian indicine cattle.
“A 2 Mb heterozygous inversion and two translocations harboring genes including KIT were associated with the gray coat phenotype in Tibetan cattle, and the inversion haplotype segment originated from South Asian indicine cattle [89].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [89] Xia, 2025, Structural Variations Associated with Adaptation and Coat Color in Qinghai-Tibetan Plateau Cattle, Adv. Sci. source
The Results section (“A 2-Mb Heterozygous Inversion Related to the Gray Coat Phenotype”) identifies a 2-Mb heterozygous inversion and two translocations associated with gray coat color; the region includes KIT. Its haplotype analysis suggests the inversion segment likely originated from South Asian indicine cattle, but the citing sentence states that origin as certain. (LLM, conf=0.87)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationBy 8800 years ago, domestic cattle had expanded into western Anatolia and spread throughout southeastern Europe.
“By 8800 years ago, domestic cattle had expanded into western Anatolia and spread throughout southeastern Europe [23].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [23] Zhang, 2020, Evolution and Domestication of the Bovini Species, Anim. Genet. source
May combine two claims.
PremisecitationThe P haplogroup is virtually absent in modern cattle, demonstrating that northern European aurochs provided a negligible contribution to the domestic gene pool, supporting the hypothesis of an exogenous origin for European domestic cattle.
“Notably, the P haplogroup is virtually absent in modern cattle, demonstrating that northern European aurochs provided a negligible contribution to the domestic gene pool, supporting the hypothesis of an exogenous origin for European domestic cattle [15,16].”
Quote in the paperSubstantial claim0 of 2 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationAurochs survived until the 17th century, and the last documented individual died in Poland in 1627.
“The species survived until the 17th century, and the last documented individual died in Poland in 1627 [4].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [4] Felius, 2014, On the History of Cattle Genetic Resources, Diversity source
May combine two claims.
PremisereasoningBoth archaeological and genetic evidence consistently support separate domestication events, designating the Near East and the Indus Valley as primary centers for taurine and zebu cattle.
“Both archaeological and genetic evidence consistently support separate domestication events, designating the Near East and the Indus Valley as primary centers for taurine and zebu cattle.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationIndian aurochs were widely distributed in the Indian subcontinent during the Pleistocene to Holocene.
“Indian aurochs were widely distributed in the Indian subcontinent during the Pleistocene to Holocene [11].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [11] Fuller, 2006, Agricultural Origins and Frontiers in South Asia: A Working Synthesis, J. World Prehist. source
May combine two claims.
InterpretationreasoningModern cattle are dynamic genomic mosaics shaped by ancient migrations, genetic introgression from extinct wild relatives, and continuous adaptation to human demands and environmental challenges.
“modern cattle are not static entities but dynamic genomic mosaics, shaped by ancient migrations, genetic introgression from extinct wild relatives, and continuous adaptation to human demands and environmental challenges.”
- Also stated in: § 1. Introduction · plain
“contemporary cattle populations are not merely static entities, but rather highly dynamic genomic mosaics.”
Quote in the paperSubstantial claim- Also stated in: § 1. Introduction · plain
May combine two claims.
PremisecitationAt the onset of the Neolithic, European aurochs with different mtDNA haplogroups coexisted on the European and Southwest Asian continent: the P haplogroup persisted in Europe from the early Neolithic to the Bronze Age, the E haplogroup was distributed in Germany, and the T haplogroup was found in the Near East.
“At the onset of the Neolithic, European aurochs with different mtDNA haplogroups coexisted on the European and Southwest Asian continent: the P haplogroup persisted in Europe from the early Neolithic to the Bronze Age, the E haplogroup was distributed in Germany, and the T haplogroup was found in the Near East [14].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [14] Edwards, 2007, Mitochondrial DNA Analysis Shows a Near Eastern Neolithic Origin for Domestic Cattle and No Indication of Domestication of European Aurochs, Proc. Biol. Sci. source
May combine two claims.
PremisecitationThe T lineage primarily includes T, T1, T2, T3 haplogroups, along with T3a or T4 haplogroups derived from T3 haplogroup, while T1 haplogroup differs by only two mutations in the control region from T3 haplogroup.
“The T lineage primarily includes T, T1, T2, T3 haplogroups, along with T3a or T4 haplogroups derived from T3 haplogroup, while T1 haplogroup differs by only two mutations in the control region from T3 haplogroup [5].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [5] Achilli, 2008, Mitochondrial Genomes of Extinct Aurochs Survive in Domestic Cattle, Curr. Biol. source
Probably not a substantial claim: may not pass S4 (based).
Premisenone givenFollowing primary domestication, cattle dispersed outward from the Near East and Indus Valley, propelled by human migration, trade, and conquest.
“Following primary domestication, cattle dispersed outward from the Near East and Indus Valley, propelled by human migration, trade, and conquest.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationFollowing domestication in the Near East, cattle entered Europe from Anatolia around 8500 years ago, subsequently reaching southern Europe and spreading northward along the Danube over the next millennium.
“Following domestication in the Near East, cattle entered Europe from Anatolia around 8500 years ago, subsequently reaching southern Europe and spreading northward along the Danube over the next millennium [41,42].”
Quote in the paperNot a substantial claim0 of 2 sources checkedMay combine two claims.
PremisecitationDespite coexistence, the maternal lineages of European cattle remained overwhelmingly Near Eastern (T3), whereas male-mediated gene flow from local aurochs occurred.
“Despite this coexistence, the maternal lineages of European cattle remained overwhelmingly Near Eastern (T3), whereas male-mediated gene flow from local aurochs occurred [27,34].”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [27] Troy, 2001, Genetic Evidence for Near-Eastern Origins of European Cattle, Nature source
- cites [34] Anderung, 2005, Cattle Domestication in the Near East Was Followed by Hybridization with Aurochs Bulls in Europe, Proc. Biol. Sci.
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
Premisenone givenBy the sixteenth century, European cattle herds had become the primary settlers of the Americas and Oceania.
“By the sixteenth century, European cattle herds had become the primary settlers of the Americas and Oceania.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationThe archaeological site of Mehrgarh in Baluchistan dates to the mid-to-late Holocene (approximately 8000 years ago); beginning in the 7th millennium, the proportion of domestic cattle bones among bovine remains increased rapidly.
“The archaeological site of Mehrgarh in Baluchistan serves as a pivotal reference for this process, dating to the mid-to-late Holocene (approximately 8000 years ago). Beginning in the 7th millennium, the proportion of domestic cattle bones among bovine remains increased rapidly [11].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [11] Fuller, 2006, Agricultural Origins and Frontiers in South Asia: A Working Synthesis, J. World Prehist. source
May combine two claims.
PremisecitationThe Yellow River Basin in China's Central Plains region experienced at least two waves of cattle migration from the north: the first from the late Neolithic to the Bronze Age, involving domestic cattle migrating from Western Eurasia that underwent approximately 10% genetic admixture with local wild cattle; the second from the late Bronze Age to the Iron Age, involving the expansion of Xinjiang-相关?
“The first occurred from the late Neolithic to the Bronze Age, involving domestic cattle migrating from Western Eurasia that underwent approximately 10% genetic admixture with local wild cattle. The second wave took place from the late Bronze Age to the Iron Age, involving the expansion of Xinjiang-related ancestry into northern China [20].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [20] Cai, 2025, Ancient Genomes Illuminate the Origins and Dynamic History of East Asian Cattle, Science source
May combine two claims.
PremisecitationBreeds like the Texas Longhorn underwent continuous crossbreeding with zebu ancestry, facilitating the spread of African cattle in the Americas and globally.
“Breeds like the Texas Longhorn underwent continuous crossbreeding with zebu ancestry [54], facilitating the spread of African cattle in the Americas and globally.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [54] McTavish, 2013, New World Cattle Show Ancestry from Multiple Independent Domestication Events, Proc. Natl. Acad. Sci. USA source
May combine two claims.
Premisenone givenEuropean taurine ancestry entered East Asia after the Medieval period, further enriching the genetic diversity of modern East Asian cattle.
“European taurine ancestry entered after the Medieval period, further enriching the genetic diversity of modern East Asian cattle.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationPure African taurine breeds are found exclusively in West Africa, largely due to their unique resistance to trypanosomosis, while Sanga breeds have been preserved through selective breeding preferences and geographic isolation.
“Pure African taurine breeds are found exclusively in West Africa [51], largely due to their unique resistance to trypanosomosis, while Sanga breeds have been preserved through selective breeding preferences and geographic isolation [49].”
Quote in the paperNot a substantial claim0 of 2 sources checkedMay combine two claims.
PremisereasoningMost modern African breeds possess the mtDNA taurine T1 haplogroup but carry zebu Y-chromosomal indicine Y3 haplogroup; this pattern characterizes male-mediated gene flow, where zebu bulls were imported and crossed with local taurine cows to confer drought tolerance.
“Consequently, most modern African breeds possess the mtDNA taurine T1 haplogroup but carry zebu Y-chromosomal indicine Y3 haplogroup. This pattern characterizes male-mediated gene flow, where zebu bulls were imported and crossed with local taurine cows to confer drought tolerance.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationZebu cattle were introduced 4000-3000 years ago, facilitated by maritime trade across the Indian Ocean and the Horn of Africa.
“Zebu cattle were introduced 4000–3000 years ago, facilitated by maritime trade across the Indian Ocean and the Horn of Africa [4].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [4] Felius, 2014, On the History of Cattle Genetic Resources, Diversity source
May combine two claims.
PremisecitationIn the late 15th and 16th centuries, European cattle, especially southern stock, reached the Americas with Spanish colonizers; historical records indicate that during Columbus's second voyage in 1493, European cattle were introduced from the Iberian Peninsula to the Caribbean islands.
“In the late 15th and 16th centuries, European cattle, especially southern stock, reached the Americas with Spanish colonizers. Historical records indicate that during Columbus’s second voyage in 1493, European cattle were introduced from the Iberian Peninsula to the Caribbean islands [4].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [4] Felius, 2014, On the History of Cattle Genetic Resources, Diversity source
Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
Premisenone givenThese cattle in cold regions typically possess thicker fur and subcutaneous fat layers to insulate against cold and reduce heat loss.
“These cattle in cold regions typically possess thicker fur and subcutaneous fat layers to insulate against cold and reduce heat loss.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationIn New Zealand, only European cattle were introduced, primarily dairy breeds originating from Britain and the Netherlands.
“In New Zealand, only European cattle were introduced, primarily dairy breeds originating from Britain and the Netherlands [4].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [4] Felius, 2014, On the History of Cattle Genetic Resources, Diversity source
Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
Premisenone givenIn hot environments, animals typically regulate their body temperature through physiological and behavioral changes such as increasing water intake, reducing food consumption, seeking shade, and altering breathing rates.
“In hot environments, animals typically regulate their body temperature through physiological and behavioral changes such as increasing water intake, reducing food consumption, seeking shade, and altering breathing rates.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Premisenone givenFrom the 17th to 19th centuries, specialized dairy and beef breeds were introduced from Europe.
“From the 17th to 19th centuries, specialized dairy and beef breeds were introduced from Europe.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationThey subsequently spread throughout the Americas with Spanish colonists during the 16th century: transported from the Caribbean to Mexico in 1521, reaching Colombia by 1524, and continuing to spread southward.
“They subsequently spread throughout the Americas with Spanish colonists during the 16th century: transported from the Caribbean to Mexico in 1521, reaching Colombia by 1524, and continuing to spread southward [4].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [4] Felius, 2014, On the History of Cattle Genetic Resources, Diversity source
Probably not a substantial claim: may not pass S2 (checkable).
InterpretationreasoningThe unique genomic characteristics and adaptive genomic regions of indigenous breeds can support future conservation and breeding efforts aimed at maintaining stress resilience under environmental changes.
“The unique genomic characteristics and adaptive genomic regions of indigenous breeds can support future conservation and breeding efforts aimed at maintaining stress resilience under environmental changes.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationBy 1540, they had expanded north to Texas, giving rise to the Texas Longhorn breed.
“By 1540, they had expanded north to Texas, giving rise to the Texas Longhorn breed [54].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [54] McTavish, 2013, New World Cattle Show Ancestry from Multiple Independent Domestication Events, Proc. Natl. Acad. Sci. USA source
May combine two claims.
InterpretationreasoningCollectively, these candidate genes participate in hypoxia response, erythropoiesis, angiogenesis, and metabolic regulation, and jointly facilitate the adaptive evolution of cattle to extremely high-altitude environments.
“Collectively, these candidate genes participate in hypoxia response, erythropoiesis, angiogenesis, and metabolic regulation, and jointly facilitate the adaptive evolution of cattle to extremely high-altitude environments.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationHSP70 expression was higher in Sahiwal than in Holstein Friesian, suggesting that zebu cattle may have greater heat tolerance.
“HSP70 expression was higher in Sahiwal than in Holstein Friesian [115], suggesting that zebu cattle may have greater heat tolerance.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [115] Fariha, 2025, Comparative Analysis of Heat Stress Response in Holstein Friesian and Sahiwal Cattle through HSP70 Gene Expression and Promoter DNA Methylation, Anim. Genet. source
- Rests on an assumption: The heat shock protein (HSP) family protects cells from thermal damage and prevents protein denaturation.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThree yak-derived SNPs in the promoter region of EGLN1 may enhance hypoxia tolerance.
“Lyu et al. [98] reported that three yak-derived SNPs in the promoter region of EGLN1 may enhance hypoxia tolerance.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [98] Lyu, 2024, Recent Selection and Introgression Facilitated High-Altitude Adaptation in Cattle, Sci. Bull. source
May combine two claims.
InterpretationreasoningA keratinized epidermis may trigger an inflammatory response upon early tick infestation, while a light-colored coat and sebum secretion likely reduce tick attachment.
“Mechanistically, a keratinized epidermis may trigger an inflammatory response upon early tick infestation, while a light-colored coat and sebum secretion likely reduce tick attachment.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationDomestic cattle exhibit a 25.6% reduction in brain volume compared to wild oxen, with docile dairy breeds showing twice the magnitude of this reduction relative to aggressive fighting breeds.
“For instance, domestic cattle exhibit a 25.6% reduction in brain volume compared to wild oxen, with docile dairy breeds showing twice the magnitude of this reduction relative to aggressive fighting breeds [128].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [128] Balcarcel, 2021, Intensive Human Contact Correlates with Smaller Brains: Differential Brain Size Reduction in Cattle Types, Proc. Biol. Sci. source
May combine two claims.
PremisecitationIntrogression signals were detected for genes involved in cold adaptation (LRP11), DNA damage repair (LATS1), and ultraviolet radiation resistance (GNPAT).
“Introgression signals were also detected for genes involved in cold adaptation (LRP11), DNA damage repair (LATS1), and ultraviolet radiation resistance (GNPAT) [98].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [98] Lyu, 2024, Recent Selection and Introgression Facilitated High-Altitude Adaptation in Cattle, Sci. Bull. source
Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
Premisenone givenIndicine cattle in East Asia and Southeast Asia live in more humid environments than those in South Asia.
“Indicine cattle in East Asia and Southeast Asia live in more humid environments than those in South Asia.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenA systematic literature search was conducted focusing primarily on articles published between 2010 and 2026.
“To ensure a comprehensive synthesis of the genomic landscape of cattle, a systematic literature search was conducted, focusing primarily on articles published between 2010 and 2026.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationreasoningCattle coat color is controlled by multiple genes and varies substantially among breeds.
“Evidently, cattle coat color is controlled by multiple genes and varies substantially among breeds.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataThe search strategy employed a combination of Boolean operators and specified keywords.
“The search strategy employed a combination of Boolean operators and the following keywords:”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductreasoningClassical archaeological findings and foundational paleogenomic studies predating 2010 were included to provide historical and evolutionary context.
“Additionally, classical archaeological findings and foundational paleogenomic studies predating 2010 were included to provide the essential historical and evolutionary context required for this review.”
Quote in the paperNot a substantial claimClassified as probably not a substantial claim.
Study design and conductnone givenPeer-reviewed literature was retrieved from PubMed, Web of Science, and Google Scholar.
“Peer-reviewed literature was retrieved from major scientific databases, including PubMed, Web of Science, and Google Scholar.”
Quote in the paperSubstantial claimMay combine two claims.
InterpretationreasoningCattle continuously adapted to novel environments through a combination of standing genetic variation, adaptive introgression from wild relatives such as banteng and yak, and intense artificial selection.
“From the initial domestication of the aurochs to their widespread dispersal across every continent, cattle have continuously adapted to novel environments through a combination of standing genetic variation, adaptive introgression from wild relatives (such as banteng and yak), and intense artificial selection.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationTaurine breeds carry a high frequency of the DGAT1 A haplotype, while zebu breeds possess a high proportion of the K haplotype.
“Haplotype analysis has shown that taurine breeds carry a high frequency of the DGAT1 A haplotype, while zebu breeds possess a high proportion of the K haplotype [154,155].”
Quote in the paperNot a substantial claim0 of 2 sources checkedMay combine two claims.
PremisecitationPolymorphisms in HSD17B8 affect body weight and average daily gain in Nanyang and Jiaxian cattle, and are associated with carcass weight and backfat thickness in Angus and Simmental.
“Polymorphisms in HSD17B8 affect body weight and average daily gain in Nanyang and Jiaxian cattle, and have also been associated with carcass weight and backfat thickness in specialized beef breeds such as Angus and Simmental [165].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [165] Ma, 2015, Bovine HSD17B8 Gene and Its Relationship with Growth and Meat Quality Traits, Sci. Bull. source
Classified as probably not a substantial claim.
Study design and conductnone givenStudies were strictly selected based on their relevance to the evolutionary history, geographic dispersal trajectories, and genomic adaptation mechanisms of Bos taurus and Bos indicus.
“Studies were strictly selected based on their relevance to the evolutionary history, geographic dispersal trajectories, and genomic adaptation mechanisms of Bos taurus and Bos indicus.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationSevane et al. reported that CAST affects fat score; HSPB1 influences ratios of lauric acid and DHA; TNFA affects lightness; and AANAT, CRH, CSN3, HSPB1, and TNFA are associated with fatty acid composition.
“Sevane et al. [176] reported that CAST affects fat score; HSPB1 influences the ratios of lauric acid (12:0) and DHA (22:6 n-3); TNFA affects lightness (L*); and AANAT, CRH, CSN3, HSPB1, and TNFA are associated with fatty acid composition.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [176] Sevane, 2014, GemQual Consortium Polymorphisms in Twelve Candidate Genes Are Associated with Growth, Muscle Lipid Profile and Meat Quality Traits in Eleven European Cattle Breeds, Mol. Biol. Rep. source
Classified as probably not a substantial claim. May combine two claims.
Study design and conductnone givenInclusion criteria prioritized high-impact original research articles, comprehensive meta-analyses and reviews, and studies utilizing high-density SNP arrays and whole-genome sequencing.
“During the literature screening process, inclusion criteria prioritized high-impact original research articles, comprehensive meta-analyses and reviews, and studies utilizing high-density SNP arrays and whole-genome sequencing.”
Quote in the paperSubstantial claim
The paper relies on this without support.
The heat shock protein (HSP) family protects cells from thermal damage and prevents protein denaturation.
“The heat shock protein (HSP) family protects cells from thermal damage and prevents protein denaturation.”
The paper relies on this without support.
Domestic cattle in tropical regions have short coats and light-colored fur.
“Domestic cattle in tropical regions have short coats and light-colored fur.”
The paper relies on this without support.
In tropical regions, pathogens such as trypanosome parasites and ticks exert immense selective pressure.
“In tropical regions, pathogens such as trypanosome parasites (transmitted by tsetse flies) and vectors like ticks exert immense selective pressure.”
The paper relies on this without support.
The Qinghai-Tibetan Plateau has extreme environmental conditions including strong ultraviolet radiation, hypoxia, low temperatures, and limited forage availability.
“The Qinghai-Tibetan Plateau has an average altitude exceeding 4000 m, characterized by extreme environmental conditions including strong ultraviolet radiation, hypoxia, low temperatures, and limited forage availability.”
The paper relies on this without support.
During domestication, cattle underwent changes in temperament, behavior, coat color, horn morphology, and reproductive cycles.
“During domestication, cattle underwent changes in temperament, behavior, coat color, horn morphology, and reproductive cycles.”
The paper relies on this without support.
Red and black coat colors are determined by the ratio of eumelanin to pheomelanin, which is regulated by variations in melanogenesis pathway-related genes ASIP, MC1R, and KIT.
“Red (yellow) and black (brown) coat colors are determined by the ratio of eumelanin to pheomelanin, which is regulated by variations in melanogenesis pathway-related genes ASIP, MC1R, and KIT.”
The paper relies on this without support.
Intensive directional selection has greatly improved milk yield in dairy cattle and meat production in beef cattle.
“It is important to recognize that intensive directional selection has greatly improved milk yield in dairy cattle and meat production in beef cattle.”
The paper relies on this without support.
Such intensive selection has also been accompanied by a reduction in genetic diversity within indigenous cattle populations, which may erode the adaptive genomic background and disease resistance of local breeds.
“However, such intensive selection has also been accompanied by a reduction in genetic diversity within indigenous cattle populations, which may erode the adaptive genomic background and disease resistance of local breeds.”
Cites
Grisart, B., Coppieters, W. R., Farnir, F., Karim, L., Ford, C. A., Berzi, P., Cambisano, N., Mni, M., Reid, S. J., Simon, P., et al. (2002) · Genome Research · doi:10.1101/gr.224202 · Cited by 967 · see citing works
Evidence for Two Independent Domestications of Cattle
Loftus, R. T., MacHugh, D. E., Bradley, D. G., Sharp, P. M., & Cunningham, P. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.7.2757 · Cited by 812 · see citing works
<i>De novo</i> assembly of the cattle reference genome with single-molecule sequencing
Rosen, B. D., Bickhart, D. M., Schnabel, R. D., Koren, S., Elsik, C. G., Tseng, E., Rowan, T. N., Low, W. Y., Zimin, A., Couldrey, C., et al. (2020) · GigaScience · doi:10.1093/gigascience/giaa021 · Cited by 802 · see citing works
Earliest Date for Milk Use in the Near East and Southeastern Europe Linked to Cattle Herding
Evershed, R. P., Payne, S., Sherratt, A. G., Copley, M. S., Coolidge, J., Urem-Kotsu, D., Kotsakis, K., Özdoğan, M., Özdoğan, A. E., Nieuwenhuyse, O., et al. (2008) · Nature · doi:10.1038/nature07180 · Cited by 681 · see citing works
The Evolution of Animal Domestication
Larson, G., & Fuller, D. Q. (2014) · Annual Review of Ecology, Evolution, and Systematics · doi:10.1146/annurev-ecolsys-110512-135813 · Cited by 640 · see citing works
Genetic Evidence for Near-Eastern Origins of European Cattle
Troy, C. S., MacHugh, D. E., Bailey, J. F., Magee, D. A., Loftus, R. T., Cunningham, P., Chamberlain, A. T., Sykes, B. C., & Bradley, D. G. (2001) · Nature · doi:10.1038/35074088 · Cited by 627 · see citing works
African Pastoralism: Genetic Imprints of Origins and Migrations
Hanotte, O., Bradley, D. G., Ochieng, J. W., Verjee, Y., Hill, E. W., & Rege, J. E. O. (2002) · Science · doi:10.1126/science.1069878 · Cited by 567 · see citing works
Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle
Decker, J. E., McKay, S. D., Rolf, M. M., Kim, J., Molina Alcalá, A., Sonstegard, T. S., Hanotte, O., Götherström, A., Seabury, C. M., Praharani, L., et al. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004254 · Cited by 521 · see citing works
Vigne, J.-D. (2011) · Comptes Rendus Biologies · doi:10.1016/j.crvi.2010.12.009 · Cited by 416 · see citing works
Chen, N., Cai, Y., Chen, Q., Li, R., Wang, K., Huang, Y., Hu, S., Huang, S., Zhang, H., Zheng, Z., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-04737-0 · Cited by 403 · see citing works
Agricultural Origins and Frontiers in South Asia: A Working Synthesis
Fuller, D. Q. (2006) · Journal of World Prehistory · doi:10.1007/s10963-006-9006-8 · Cited by 387 · see citing works
The Origin of European Cattle: Evidence from Modern and Ancient DNA
Beja-Pereira, A., Caramelli, D., Lalueza-Fox, C., Vernesi, C., Ferrand, N., Casoli, A., Goyache, F., Royo, L. J., Conti, S., Lari, M., et al. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0509210103 · Cited by 342 · see citing works
Brito, L. F., Bédère, N., Douhard, F., de Oliveira, H. R., Arnal, M., Peñagaricano, F., Schinckel, A. P., Baes, C. F., & Miglior, F. (2021) · animal · doi:10.1016/j.animal.2021.100292 · Cited by 324 · see citing works
Mitochondrial Genomes of Extinct Aurochs Survive in Domestic Cattle
Achilli, A., Olivieri, A., Pellecchia, M., Uboldi, C., Colli, L., Al-Zahery, N., Accetturo, M., Pala, M., Kashani, B. H., Perego, U. A., et al. (2008) · Current Biology · doi:10.1016/j.cub.2008.01.019 · Cited by 290 · see citing works
On the Origin of Cattle: How Aurochs Became Cattle and Colonized the World
Ajmone‐Marsan, P., Garcia, J. F., & Lenstra, J. A. (2010) · Evolutionary Anthropology Issues News and Reviews · doi:10.1002/evan.20267 · Cited by 287 · see citing works
Domesticating animals in Africa: implications of genetic and archaeological findings
Gifford-Gonzalez, D., & Hanotte, O. (2011) · Journal of World Prehistory · doi:10.1007/s10963-010-9042-2 · Cited by 274 · see citing works
The Genome Landscape of Indigenous African Cattle
Kim, J., Hanotte, O., Mwai, O. A., Dessie, T., Bashir, S., Diallo, B., Agaba, M., Kim, K., Kwak, W., Sung, S., et al. (2017) · Genome biology · doi:10.1186/s13059-017-1153-y · Cited by 271 · see citing works
Edwards, C. J., Bollongino, R., Scheu, A., Chamberlain, A., Tresset, A., Vigne, J.-D., Baird, J. F., Larson, G., Ho, S. Y. W., Heupink, T. H., et al. (2007) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2007.0020 · Cited by 266 · see citing works
Hanotte, O., Tawah, C. L., Bradley, D. G., Okomo, M., Verjee, Y., Ochieng, J., & Rege, J. E. O. (2000) · Molecular Ecology · doi:10.1046/j.1365-294x.2000.00858.x · Cited by 257 · see citing works
Zebu Cattle Are an Exclusive Legacy of the South Asia Neolithic
Chen, S., Lin, B.-Z., Baig, M., Mitra, B., Lopes, R. J., Santos, A. M., Magee, D. A., Azevedo, M., Tarroso, P., Sasazaki, S., et al. (2010) · Molecular Biology and Evolution · doi:10.1093/molbev/msp213 · Cited by 248 · see citing works
Thermal Biology of Domestic Animals
Collier, R. J., & Gebremedhin, K. G. (2015) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-022114-110659 · Cited by 239 · see citing works
A multi-tissue atlas of regulatory variants in cattle
Liu, S.-L., Gao, Y., Canela-Xandri, O., Wang, S., Yu, Y., Cai, W.-T., Li, B.-J., Xiang, R., Chamberlain, A., Pairo-Castineira, E., et al. (2022) · Nature Genetics · doi:10.1038/s41588-022-01153-5 · Cited by 237 · see citing works
Genetic selection for temperament traits in dairy and beef cattle
Haskell, M. J., Simm, G., & Turner, S. P. (2014) · Frontiers in Genetics · doi:10.3389/fgene.2014.00368 · Cited by 231 · see citing works
Park, S. D. E., Magee, D. A., McGettigan, P., Teasdale, M. D., Edwards, C. J., Lohan, A. J., Murphy, A., Braud, M., Donoghue, M. T. A., Liu, Y., et al. (2015) · Genome biology · doi:10.1186/s13059-015-0790-2 · Cited by 228 · see citing works
Self-citationAncient Cattle Genomics, Origins, and Rapid Turnover in the Fertile Crescent
Verdugo, M. P., Mullin, V. E., Scheu, A., Mattiangeli, V., Daly, K. G., Maisano Delser, P., Hare, A. J., Burger, J., Collins, M. J., Kehati, R., et al. (2019) · Science · doi:10.1126/science.aav1002 · Cited by 227 · see citing works
New World Cattle Show Ancestry from Multiple Independent Domestication Events
McTavish, E. J., Decker, J. E., Schnabel, R. D., Taylor, J. F., & Hillis, D. M. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1303367110 · Cited by 218 · see citing works
The Multifaceted Origin of Taurine Cattle Reflected by the Mitochondrial Genome
Achilli, A., Bonfiglio, S., Olivieri, A., Malusà, A., Pala, M., Kashani, B. H., Perego, U. A., Ajmone-Marsan, P., Liotta, L., Semino, O., et al. (2009) · PLoS ONE · doi:10.1371/journal.pone.0005753 · Cited by 212 · see citing works
Cattle domestication in the Near East was followed by hybridization with aurochs bulls in Europe
Götherström, A., Anderung, C., Hellborg, L., Elburg, R., Smith, C. I., Bradley, D. G., & Ellegren, H. (2005) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2005.3243 · Cited by 208 · see citing works
The bovine lactation genome: insights into the evolution of mammalian milk
Lemay, D. G., Lynn, D. J., Martin, W. F., Neville, M. C., Casey, T., Rincón, G., Kriventseva, E. V., Barris, W., Hinrichs, A. S., Molenaar, A. J., et al. (2009) · Genome biology · doi:10.1186/gb-2009-10-4-r43 · Cited by 197 · see citing works
Domestication of Cattle: Two or Three Events?
Pitt, D., Sevane, N., Nicolazzi, E. L., MacHugh, D. E., Park, S. D. E., Colli, L., Martinez, R., Bruford, M. W., & Orozco‐terWengel, P. (2019) · Evolutionary Applications · doi:10.1111/eva.12674 · Cited by 195 · see citing works
Modern taurine cattle descended from small number of near-eastern founders
Bollongino, R., Burger, J., Powell, A., Mashkour, M., Vigne, J.-D., & Thomas, M. G. (2012) · Molecular Biology and Evolution · doi:10.1093/molbev/mss092 · Cited by 188 · see citing works
Mannen, H., Kohno, M., Nagata, Y., Tsuji, S., Bradley, D. G., Yeo, J. S., Nyamsamba, D., Zagdsuren, Y., Yokohama, M., Nomura, K., et al. (2004) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2004.01.010 · Cited by 187 · see citing works
On the History of Cattle Genetic Resources
Felius, M., Beerling, M.-L., Buchanan, D., Theunissen, B., Koolmees, P., & Lenstra, J. (2014) · Diversity · doi:10.3390/d6040705 · Cited by 176 · see citing works
Unexpected cross-species contamination in genome sequencing projects
Merchant, S., Wood, D. E., & Salzberg, S. L. (2014) · PeerJ · doi:10.7717/peerj.675 · Cited by 162 · see citing works
Low, W. Y., Tearle, R. G., Liu, R., Koren, S., Rhie, A., Bickhart, D. M., Rosen, B. D., Kronenberg, Z. N., Kingan, S. B., Tseng, E., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-15848-y · Cited by 150 · see citing works
Genetic Diversity and Origin of Chinese Cattle Revealed by mtDNA D-Loop Sequence Variation
Lai, S.-J., Liu, Y.-P., Liu, Y.-X., Li, X.-W., & Yao, Y.-G. (2006) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2005.06.013 · Cited by 143 · see citing works
Self-citationThe Mosaic Genome of Indigenous African Cattle as a Unique Genetic Resource for African Pastoralism
Kim, K., Kwon, T., Dessie, T., Yoo, D., Mwai, O. A., Jang, J., Sung, S., Lee, S., Salim, B., Jung, J., et al. (2020) · Nature Genetics · doi:10.1038/s41588-020-0694-2 · Cited by 140 · see citing works
How Mammals Stay Healthy in Nature: The Evolution of Behaviours to Avoid Parasites and Pathogens
Hart, B. L., & Hart, L. A. (2018) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2017.0205 · Cited by 138 · see citing works
Genomic clues of the evolutionary history of <i>Bos indicus</i> cattle
Utsunomiya, Y. T., Milanesi, M., Fortes, M. R. S., Porto‐Neto, L. R., Utsunomiya, A. T. H., Silva, M. V. G. B., Garcia, J. F., & Ajmone‐Marsan, P. (2019) · Animal Genetics · doi:10.1111/age.12836 · Cited by 128 · see citing works
Ghoreishifar, S. M., Eriksson, S., Johansson, A. M., Khansefid, M., Moghaddaszadeh-Ahrabi, S., Parna, N., Davoudi, P., & Javanmard, A. (2020) · Genetics Selection Evolution · doi:10.1186/s12711-020-00571-5 · Cited by 126 · see citing works
Genome-Wide Scan for Selection Signatures in Six Cattle Breeds in South Africa
Makina, S. O., Muchadeyi, F. C., van Marle-Köster, E., Taylor, J. F., Makgahlela, M. L., & Maiwashe, A. (2015) · Genetics Selection Evolution · doi:10.1186/s12711-015-0173-x · Cited by 125 · see citing works
<i>DGAT1</i> polymorphism in <i>Bos indicus</i> and <i>Bos taurus</i> cattle breeds
Kaupe, B., Winter, A., Fries, R., & Erhardt, G. (2004) · Journal of Dairy Research · doi:10.1017/s0022029904000032 · Cited by 124 · see citing works
Ponnampalam, E. N., Priyashantha, H., Vidanarachchi, J. K., Kiani, A., & Holman, B. W. B. (2024) · Animals · doi:10.3390/ani14060840 · Cited by 122 · see citing works
Genome Sequence and Assembly of Bos indicus
Canavez, F., Luche, D. D., Stothard, P., Leite, K. R. M., de Sousa-Canavez, J. M., Plastow, G. S., Meidânis, J., Souza, M. A., Feijão, P., Moore, S. S., et al. (2012) · Journal of Heredity · doi:10.1093/jhered/esr153 · Cited by 120 · see citing works
Yurchenko, A. A., Daetwyler, H. D., Yudin, N., Schnabel, R. D., Vander Jagt, C. J., Soloshenko, V., Lhasaranov, B., Popov, R., Taylor, J. F., & Larkin, D. M. (2018) · Scientific Reports · doi:10.1038/s41598-018-31304-w · Cited by 117 · see citing works
Cymbron, T., Freeman, A. R., Isabel Malheiro, M., Vigne, J.-D., & Bradley, D. G. (2005) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2005.3138 · Cited by 117 · see citing works
Bonfiglio, S., Achilli, A., Olivieri, A., Negrini, R., Colli, L., Liotta, L., Ajmone-Marsan, P., Torroni, A., & Ferretti, L. (2010) · PLoS ONE · doi:10.1371/journal.pone.0015760 · Cited by 113 · see citing works
Ginja, C., Penedo, M. C. T., Melucci, L., Quiroz, J., Martínez López, O. R., Revidatti, M. A., Martínez‐Martínez, A., Delgado, J. V., & Gama, L. T. (2010) · Animal Genetics · doi:10.1111/j.1365-2052.2009.01976.x · Cited by 113 · see citing works
A cattle graph genome incorporating global breed diversity
Talenti, A., Powell, J., Hemmink, J. D., Cook, E. A. J., Wragg, D., Jayaraman, S., Paxton, E. A., Ezeasor, C., Obishakin, E., Agusi, E. R., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-28605-0 · Cited by 113 · see citing works
Species Composition and Environmental Adaptation of Indigenous Chinese Cattle
Gao, Y., Gautier, M., Ding, X., Zhang, H., Wang, Y., Wang, X., Faruque, M. O., Li, J., Ye, S., Gou, X., et al. (2017) · Scientific Reports · doi:10.1038/s41598-017-16438-7 · Cited by 112 · see citing works
Wu, X., Fang, M., Liu, L., Wang, S., Liu, J., Ding, X., Zhang, S., Zhang, Q., Zhang, Y. C., Qiao, L., et al. (2013) · BMC Genomics · doi:10.1186/1471-2164-14-897 · Cited by 109 · see citing works
Origin and Spread of Bos taurus: New Clues from Mitochondrial Genomes Belonging to Haplogroup T1
Bonfiglio, S., Ginja, C., De Gaetano, A., Achilli, A., Olivieri, A., Colli, L., Tesfaye, K., Agha, S. H., Gama, L. T., Cattonaro, F., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0038601 · Cited by 106 · see citing works
Kumar, A., Ashraf, S., Goud, T. S., Grewal, A., Singh, S. V., Yadav, B. R., & Upadhyay, R. C. (2015) · Journal of Thermal Biology · doi:10.1016/j.jtherbio.2015.03.006 · Cited by 104 · see citing works
Origin and Phylogeographical Structure of Chinese Cattle
Lei, C. Z., Chen, H., Zhang, H. C., Cai, X., Liu, R. Y., Luo, L. Y., Wang, C. F., Zhang, W., Ge, Q. L., Zhang, R. F., et al. (2006) · Animal Genetics · doi:10.1111/j.1365-2052.2006.01524.x · Cited by 98 · see citing works
Saravanan, K. A., Panigrahi, M., Kumar, H., Parida, S., Bhushan, B., Gaur, G. K., Dutt, T., Mishra, B. P., & Singh, R. K. (2021) · Genomics · doi:10.1016/j.ygeno.2021.02.009 · Cited by 98 · see citing works
Novel Functional Sequences Uncovered through a Bovine Multiassembly Graph
Crysnanto, D., Leonard, A. S., Fang, Z.-H., & Pausch, H. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2101056118 · Cited by 96 · see citing works
Iso‐Touru, T., Tapio, M., Vilkki, J., Kiseleva, T., Ammosov, I., Ivanova, Z., Popov, R. G., Ozerov, M. Y., & Kantanen, J. (2016) · Animal Genetics · doi:10.1111/age.12473 · Cited by 91 · see citing works
Zhou, Y., Yang, L., Han, X., Han, J., Hu, Y., Li, F., Xia, H., Peng, L., Boschiero, C., Rosen, B. D., et al. (2022) · Genome Research · doi:10.1101/gr.276550.122 · Cited by 89 · see citing works
The Origins of Chinese Domestic Cattle as Revealed by Ancient DNA Analysis
Cai, D., Sun, Y., Tang, Z., Hu, S., Li, W., Zhao, X., Xiang, H., & Zhou, H. (2014) · Journal of Archaeological Science · doi:10.1016/j.jas.2013.09.003 · Cited by 85 · see citing works
Chen, N., Xia, X., Hanif, Q., Zhang, F., Dang, R., Huang, B., Lyu, Y., Luo, X., Zhang, H., Yan, H., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-43626-z · Cited by 83 · see citing works
Self-citationEvolution and Domestication of the Bovini Species
Zhang, K., Lenstra, J. A., Zhang, S., Liu, W., & Liu, J. (2020) · Animal Genetics · doi:10.1111/age.12974 · Cited by 82 · see citing works
New Loci and Neuronal Pathways for Resilience to Heat Stress in Cattle
Cheruiyot, E. K., Haile-Mariam, M., Cocks, B. G., MacLeod, I. M., Xiang, R., & Pryce, J. E. (2021) · Scientific Reports · doi:10.1038/s41598-021-95816-8 · Cited by 81 · see citing works
Demography and Rapid Local Adaptation Shape Creole Cattle Genome Diversity in the Tropics
Pitt, D., Bruford, M. W., Barbato, M., Orozco‐terWengel, P., Martínez, R., & Sevane, N. (2019) · Evolutionary Applications · doi:10.1111/eva.12641 · Cited by 79 · see citing works
Xia, J., Qi, X., Wu, Y., Zhu, B., Xu, L., Zhang, L., Gao, X., Chen, Y., Li, J., & Gao, H. (2016) · Mammalian Genome · doi:10.1007/s00335-016-9635-x · Cited by 77 · see citing works
Effect of Heat Shock Protein 70 Polymorphism on Thermotolerance in Tharparkar Cattle
Bhat, S., Kumar, P., Kashyap, N., Deshmukh, B., Dige, M. S., Bhushan, B., Chauhan, A., Kumar, A., & Singh, G. (2016) · Veterinary World · doi:10.14202/vetworld.2016.113-117 · Cited by 73 · see citing works
Ginja, C., Gama, L. T., Cortés, O., Burriel, I. M., Vega-Pla, J. L., Penedo, C., Sponenberg, P., Cañón, J., Sanz, A., do Egito, A. A., et al. (2019) · Scientific Reports · doi:10.1038/s41598-019-47636-0 · Cited by 71 · see citing works
Näslund, J., Fikse, W. F., Pielberg, G. R., & Lundén, A. (2008) · Journal of Dairy Science · doi:10.3168/jds.2007-0330 · Cited by 70 · see citing works
Mona, S., Catalano, G., Lari, M., Larson, G., Boscato, P., Casoli, A., Sineo, L., Di Patti, C., Pecchioli, E., Caramelli, D., et al. (2010) · BMC Evolutionary Biology · doi:10.1186/1471-2148-10-83 · Cited by 69 · see citing works
Gao, X., Wang, S., Wang, Y., Li, S., Wu, S., Yan, R., Zhang, Y., Wan, R.-D., He, Z., Song, R., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-32164-9 · Cited by 69 · see citing works
Zhang, W., Gao, X., Zhang, Y., Zhao, Y., Zhang, J., Jia, Y., Zhu, B., Xu, L., Zhang, L., Gao, H., et al. (2018) · BMC Genetics · doi:10.1186/s12863-018-0705-9 · Cited by 66 · see citing works
A gentle introduction to pangenomics
Matthews, C., Watson‐Haigh, N. S., Burton, R. A., & Sheppard, A. E. (2024) · Briefings in Bioinformatics · doi:10.1093/bib/bbae588 · Cited by 64 · see citing works
Bharati, J., Dangi, S. S., Mishra, S. R., Chouhan, V. S., Verma, V., Shankar, O., Bharti, M. K., Paul, A., Mahato, D. K., Rajesh, G., et al. (2017) · Journal of Thermal Biology · doi:10.1016/j.jtherbio.2017.02.002 · Cited by 63 · see citing works
Verma, P., Sharma, A., Sodhi, M., Thakur, K., Kataria, R. S., Niranjan, S. K., Bharti, V. K., Kumar, P., Giri, A., Kalia, S., et al. (2018) · Scientific Reports · doi:10.1038/s41598-018-25736-7 · Cited by 63 · see citing works
Y‐specific microsatellites reveal an African subfamily in taurine (<i>Bos taurus</i>) cattle
Pérez‐Pardal, L., Royo, L. J., Beja‐Pereira, A., Curik, I., Traoré, A., Fernández, I., Sölkner, J., Alonso, J., Álvarez, I., Bozzi, R., et al. (2010) · Animal Genetics · doi:10.1111/j.1365-2052.2009.01988.x · Cited by 61 · see citing works
Variants at the ASIP locus contribute to coat color darkening in Nellore cattle
Trigo, B. B., Utsunomiya, A. T. H., Fortunato, A. A. A. D., Milanesi, M., Torrecilha, R. B. P., Lamb, H. J., Nguyen, L. T., Ross, E. M., Hayes, B. J., Padula, R. C. M., et al. (2021) · Genetics Selection Evolution · doi:10.1186/s12711-021-00633-2 · Cited by 61 · see citing works
Navigating Sustainability Trade-Offs in Global Beef Production
Castonguay, A. C., Polasky, S., H. Holden, M., Herrero, M., Mason-D’Croz, D., Godde, C., Chang, J., Gerber, J., Witt, G. B., Game, E. T., et al. (2023) · Nature Sustainability · doi:10.1038/s41893-022-01017-0 · Cited by 57 · see citing works
Smith, T. P. L., Bickhart, D. M., Boichard, D., Chamberlain, A. J., Djikeng, A., Jiang, Y., Low, W. Y., Pausch, H., Demyda-Peyrás, S., Prendergast, J., et al. (2023) · Genome biology · doi:10.1186/s13059-023-02975-0 · Cited by 57 · see citing works
Marom, N., & Bar-Oz, G. (2013) · PLoS ONE · doi:10.1371/journal.pone.0055958 · Cited by 56 · see citing works
Miretti, M. M., Dunner, S., Naves, M., Contel, E. P., & Ferro, J. A. (2004) · Journal of Heredity · doi:10.1093/jhered/esh070 · Cited by 56 · see citing works
Ancient DNA Reveals Evidence of Abundant Aurochs (Bos Primigenius) in Neolithic Northeast China
Cai, D., Zhang, N., Zhu, S., Chen, Q., Wang, L., Zhao, X., Ma, X., Royle, T. C. A., Zhou, H., & Yang, D. Y. (2018) · Journal of Archaeological Science · doi:10.1016/j.jas.2018.08.003 · Cited by 55 · see citing works
Whole Genome Scan and Selection Signatures for Climate Adaption in Yanbian Cattle
Shen, J., Hanif, Q., Cao, Y., Yu, Y., Lei, C., Zhang, G., & Zhao, Y. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2020.00094 · Cited by 53 · see citing works
Xia, X., Zhang, F., Li, S., Luo, X., Peng, L., Dong, Z., Pausch, H., Leonard, A. S., Crysnanto, D., Wang, S., et al. (2023) · Genome biology · doi:10.1186/s13059-023-03052-2 · Cited by 53 · see citing works
A Reference Genome Assembly of Simmental Cattle, <i>Bos taurus taurus</i>
Heaton, M. P., Smith, T. P. L., Bickhart, D. M., Vander Ley, B. L., Kuehn, L. A., Oppenheimer, J., Shafer, W. R., Schuetze, F. T., Stroud, B., McClure, J. C., et al. (2021) · Journal of Heredity · doi:10.1093/jhered/esab002 · Cited by 52 · see citing works
Statistical Modeling of Candidate Gene Effects on Milk Production Traits in Dairy Cattle
Szyda, J., & Komisarek, J. (2007) · Journal of Dairy Science · doi:10.3168/jds.2006-724 · Cited by 51 · see citing works
Chen, M., Pan, D., Ren, H., Fu, J., Li, J., Su, G., Wang, A., Jiang, L., Zhang, Q., & Liu, J.-F. (2016) · Genetics Selection Evolution · doi:10.1186/s12711-016-0254-5 · Cited by 50 · see citing works
Gebrehiwot, N. Z., Strucken, E. M., Aliloo, H., Marshall, K., & Gibson, J. P. (2020) · BMC Genomics · doi:10.1186/s12864-020-07270-x · Cited by 50 · see citing works
Recent Selection and Introgression Facilitated High-Altitude Adaptation in Cattle
Lyu, Y., Wang, F., Cheng, H., Han, J., Dang, R., Xia, X., Wang, H., Zhong, J., Lenstra, J. A., Zhang, H., et al. (2024) · Science Bulletin · doi:10.1016/j.scib.2024.05.030 · Cited by 50 · see citing works
Kongsuwan, K., Josh, P., Colgrave, M. L., Bagnall, N. H., Gough, J., Burns, B., & Pearson, R. (2010) · International Journal for Parasitology · doi:10.1016/j.ijpara.2009.10.013 · Cited by 48 · see citing works
Comprehensive analysis of the mitochondrial <scp>DNA</scp> diversity in Chinese cattle
Xia, X., Qu, K., Zhang, G., Jia, Y., Ma, Z., Zhao, X., Huang, Y., Chen, H., Huang, B., & Lei, C. (2019) · Animal Genetics · doi:10.1111/age.12749 · Cited by 48 · see citing works
GemQual Consortium, Sevane, N., Armstrong, E., Wiener, P., Pong Wong, R., & Dunner, S. (2014) · Molecular Biology Reports · doi:10.1007/s11033-014-3343-y · Cited by 45 · see citing works
Mei, C., Wang, H., Liao, Q., Khan, R., Raza, S. H. A., Zhao, C., Wang, H., Cheng, G., Tian, W., Li, Y., et al. (2019) · Genomics · doi:10.1016/j.ygeno.2018.09.021 · Cited by 45 · see citing works
Pérez-Pardal, L., Sánchez-Gracia, A., Álvarez, I., Traoré, A., Ferraz, J. B. S., Fernández, I., Costa, V., Chen, S., Tapio, M., Cantet, R. J. C., et al. (2018) · Scientific Reports · doi:10.1038/s41598-018-36444-7 · Cited by 45 · see citing works
Upadhyay, M., Bortoluzzi, C., Barbato, M., Ajmone‐Marsan, P., Colli, L., Ginja, C., Sonstegard, T. S., Bosse, M., Lenstra, J. A., Groenen, M. A. M., et al. (2019) · Evolutionary Applications · doi:10.1111/eva.12770 · Cited by 45 · see citing works
Climate Adaptation of Tropical Cattle
Barendse, W. (2017) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-022516-022921 · Cited by 44 · see citing works
Naval-Sánchez, M., Porto-Neto, L. R., Cardoso, D. F., Hayes, B. J., Daetwyler, H. D., Kijas, J., & Reverter, A. (2020) · Genetics Selection Evolution · doi:10.1186/s12711-020-00546-6 · Cited by 43 · see citing works
Dai, X., Bian, P., Hu, D., Luo, F., Huang, Y., Jiao, S., Wang, X., Gong, M., Li, R., Cai, Y., et al. (2023) · Genome Research · doi:10.1101/gr.277481.122 · Cited by 43 · see citing works
African Matrilineages in American Creole Cattle: Evidence of Two Independent Continental Sources
Lirón, J. P., Bravi, C. M., Mirol, P. M., Peral‐García, P., & Giovambattista, G. (2006) · Animal Genetics · doi:10.1111/j.1365-2052.2006.01452.x · Cited by 42 · see citing works
Igoshin, A. V., Yurchenko, A. A., Belonogova, N. M., Petrovsky, D. V., Aitnazarov, R. B., Soloshenko, V. A., Yudin, N. S., & Larkin, D. M. (2019) · BMC Genetics · doi:10.1186/s12863-019-0725-0 · Cited by 42 · see citing works
Zhang, Y., Hu, Y., Wang, X., Jiang, Q., Zhao, H., Wang, J., Ju, Z., Yang, L., Gao, Y., Wei, X., et al. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2019.01404 · Cited by 42 · see citing works
Jivanji, S., Worth, G., Lopdell, T. J., Yeates, A., Couldrey, C., Reynolds, E., Tiplady, K., McNaughton, L., Johnson, T. J. J., Davis, S. R., et al. (2019) · Genetics Selection Evolution · doi:10.1186/s12711-019-0506-2 · Cited by 41 · see citing works
Paternal Origins of Chinese Cattle
Li, R., Zhang, X. M., Campana, M. G., Huang, J. P., Chang, Z. H., Qi, X. B., Shi, H., Su, B., Zhang, R. F., Lan, X. Y., et al. (2013) · Animal Genetics · doi:10.1111/age.12022 · Cited by 40 · see citing works
Kennedy, U., Sharma, A., & Phillips, C. J. C. (2018) · Animals · doi:10.3390/ani8050064 · Cited by 37 · see citing works
Mekonnen, Y. A., Gültas, M., Effa, K., Hanotte, O., & Schmitt, A. O. (2019) · Frontiers in Genetics · doi:10.3389/fgene.2019.01095 · Cited by 37 · cited 1× · see citing works
“In Sheko, another trypanotolerant breed, 15 genes related to anemia, immune tolerance, and neurological dysfunction ( MIGA1 , CDAN1 , HSPA9 , PCSK6 , ERN1 , CAPG ) showed signatures of selection [104].”
Braud, M., Magee, D. A., Park, S. D. E., Sonstegard, T. S., Waters, S. M., MacHugh, D. E., & Spillane, C. (2017) · Frontiers in Genetics · doi:10.3389/fgene.2017.00003 · Cited by 36 · see citing works
Balcarcel, A. M., Veitschegger, K., Clauss, M., & Sánchez-Villagra, M. R. (2021) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2021.0813 · Cited by 35 · see citing works
Signatures of Selection in Nelore Cattle Revealed by Whole-Genome Sequencing Data
Maiorano, A. M., Cardoso, D. F., Carvalheiro, R., Júnior, G. A. F., de Albuquerque, L. G., & de Oliveira, H. N. (2022) · Genomics · doi:10.1016/j.ygeno.2022.110304 · Cited by 33 · see citing works
Ancestral Matrilineages and Mitochondrial DNA Diversity of the Lidia Cattle Breed
Cortés, O., Tupac‐Yupanqui, I., Dunner, S., García‐Atance, M. A., García, D., Fernández, J., & Cañón, J. (2008) · Animal Genetics · doi:10.1111/j.1365-2052.2008.01782.x · Cited by 32 · see citing works
Genetic variants in MYF5 affected growth traits and beef quality traits in Chinese Qinchuan cattle
Zhao, C., Raza, S. H. A., Khan, R., et al. (2020) · Genomics · doi:10.1016/j.ygeno.2020.03.018 · Cited by 32 · see citing works
The Genomic Natural History of the Aurochs
Rossi, C., Sinding, M.-H. S., Mullin, V. E., Scheu, A., Erven, J. A. M., Verdugo, M. P., Daly, K. G., Ciucani, M. M., Mattiangeli, V., Teasdale, M. D., et al. (2024) · Nature · doi:10.1038/s41586-024-08112-6 · Cited by 32 · see citing works
Simmental Cattle Breed in Different Production Systems
Perisic, P., Skalicki, Z., Petrovic, M. M., Bogdanovic, V., & Ruzic-Muslic, D. (2009) · Biotechnology in Animal Husbandry · doi:10.2298/bah0906315p · Cited by 31 · see citing works
Polymorphism of Genes and Their Impact on Beef Quality
Kostusiak, P., Slósarz, J., Gołębiewski, M., Grodkowski, G., & Puppel, K. (2023) · Current Issues in Molecular Biology · doi:10.3390/cimb45060302 · Cited by 30 · see citing works
Duarte, J. L. G., Yuan, C., Gori, A.-S., Moreira, G. C. M., Takeda, H., Coppieters, W. R., Charlier, C., Georges, M., & Druet, T. (2023) · Genetics Selection Evolution · doi:10.1186/s12711-023-00857-4 · Cited by 30 · see citing works
Beef Production and Carcass Evaluation in Brazil
Nunes, C. L. D. C., Pflanzer, S. B., Rezende-de-Souza, J. H., & Chizzotti, M. L. (2024) · Animal Frontiers · doi:10.1093/af/vfad074 · Cited by 29 · see citing works
Genome-wide association study for longevity in the Holstein cattle population
Steri, R., Moioli, B., Catillo, G., Galli, A., & Buttazzoni, L. (2018) · animal · doi:10.1017/s1751731118003191 · Cited by 28 · see citing works
Discovery of Genomic Characteristics and Selection Signatures in Southern Chinese Local Cattle
Liu, Y., Xu, L., Yang, L., Zhao, G., Li, J., Liu, D., & Li, Y. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2020.533052 · Cited by 27 · see citing works
Self-citationGenetic Analysis of Thai Cattle Reveals a Southeast Asian Indicine Ancestry
Wangkumhang, P., Wilantho, A., Shaw, P. J., Flori, L., Moazami-Goudarzi, K., Gautier, M., Duangjinda, M., Assawamakin, A., & Tongsima, S. (2015) · PeerJ · doi:10.7717/peerj.1318 · Cited by 26 · see citing works
Taye, M., Lee, W., Caetano-Anolles, K., Dessie, T., Cho, S., Jong Oh, S., Lee, H.-K., & Kim, H. (2018) · Cogent Food & Agriculture · doi:10.1080/23311932.2018.1552552 · Cited by 26 · see citing works
Jiang, L., Kon, T., Chen, C., Ichikawa, R., Zheng, Q., Pei, L., Takemura, I., Nsobi, L. H., Tabata, H., Pan, H., et al. (2021) · Scientific Reports · doi:10.1038/s41598-021-96896-2 · Cited by 26 · see citing works
Huang, N., Zhao, L., Wang, J., Jiang, Q., Ju, Z., Wang, X., Yang, C., Gao, Y., Wei, X., Zhang, Y., et al. (2023) · Journal of Animal Science · doi:10.1093/jas/skad006 · Cited by 26 · see citing works
Seo, D., Lee, D. H., Jin, S., Won, J. I., Lim, D., Park, M., Kim, T. H., Lee, H. K., Kim, S., Choi, I., et al. (2022) · Scientific Reports · doi:10.1038/s41598-022-09425-0 · Cited by 25 · see citing works
Mukherjee, S., Cai, Z., Mukherjee, A., Longkumer, I., Mech, M., Vüpru, K., Khate, K., Rajkhowa, C., Mitra, A., Guldbrandtsen, B., et al. (2019) · BMC Genomics · doi:10.1186/s12864-019-5980-y · Cited by 24 · see citing works
Gene expression profiles underlying aggressive behavior in the prefrontal cortex of cattle
Eusebi, P. G., Sevane, N., O’Rourke, T., Pizarro, M., Boeckx, C., & Dunner, S. (2021) · BMC Genomics · doi:10.1186/s12864-021-07505-5 · Cited by 24 · cited 1× · see citing works
“Compared with Wagyu cattle, the highly aggressive Lidia breed shows upregulated expression of genes enriched in pathways linked to abnormal aggression and neurophysiological disorders, including LAMA2 , DRD2 , and GAD2 [131].”
Inference of Admixture Origins in Indigenous African Cattle
Kim, K., Kim, D., Hanotte, O., Lee, C., Kim, H., & Jeong, C. (2023) · Molecular Biology and Evolution · doi:10.1093/molbev/msad257 · Cited by 24 · see citing works
Whole Blood Transcriptome Analysis Reveals Footprints of Cattle Adaptation to Sub-Arctic Conditions
Pokharel, K., Weldenegodguad, M., Popov, R., Honkatukia, M., Huuki, H., Lindeberg, H., Peippo, J., Reilas, T., Zarovnyaev, S., & Kantanen, J. (2019) · Animal Genetics · doi:10.1111/age.12783 · Cited by 23 · see citing works
Houaga, I., Muigai, A. W. T., Ng’ang’a, F. M., Ibeagha-Awemu, E. M., Kyallo, M., Youssao, I. A. K., & Stomeo, F. (2018) · Molecular Biology Reports · doi:10.1007/s11033-018-4331-4 · Cited by 23 · cited 1× · see citing works
“DGAT1 encodes a microsomal enzyme that catalyzes triglyceride synthesis and serves as a key rate-limiting step for milk fat production [151,152].”
Liu, X., Li, Z., Yan, Y., Li, Y., Wu, H., Pei, J., Yan, P., Yang, R., Guo, X., & Lan, X. (2021) · Evolutionary Applications · doi:10.1111/eva.13168 · Cited by 23 · see citing works
Self-citationComplete Mitochondrial Genome of Wild Aurochs (Bos Primigenius) Reconstructed from Ancient DNA
Zeyland, J., Wolko, Ł., Bocianowski, J., Szalata, M., Słomski, R., Dzieduszycki, A. M., Ryba, M., Przystałowska, H., & Lipiński, D. (2013) · Polish Journal of Veterinary Sciences · doi:10.2478/pjvs-2013-0037 · Cited by 22 · see citing works
Lu, X., Arbab, A. A. I., Zhang, Z., Fan, Y., Han, Z., Gao, Q., Sun, Y., & Yang, Z. (2020) · Animals · doi:10.3390/ani10081271 · Cited by 22 · see citing works
An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis
Sudrajad, P., Subiharta, S., Adinata, Y., Lathifah, A., Lee, J. H., Lenstra, J. A., & Lee, S. H. (2020) · PLOS ONE · doi:10.1371/journal.pone.0241038 · Cited by 22 · see citing works
Sanchez, M.-P., Tribout, T., Fritz, S., et al. (2022) · Genetics Selection Evolution · doi:10.1186/s12711-022-00757-z · Cited by 22 · see citing works
Whole Genome Sequencing Reveals Signals of Adaptive Admixture in Creole Cattle
Ben-Jemaa, S., Adam, G., Boussaha, M., Bardou, P., Klopp, C., Mandonnet, N., & Naves, M. (2023) · Scientific Reports · doi:10.1038/s41598-023-38774-7 · Cited by 22 · see citing works
Evolution and Legacy of East Asian Aurochs
Hou, J., Guan, X., Xia, X., Lyu, Y., Liu, X., Mazei, Y., Xie, P., Chang, F., Zhang, X., Chen, J., et al. (2024) · Science Bulletin · doi:10.1016/j.scib.2024.09.016 · Cited by 22 · see citing works
Milia, S., Leonard, A. S., Mapel, X. M., Bernal Ulloa, S. M., Drögemüller, C., & Pausch, H. (2025) · Genome Research · doi:10.1101/gr.279064.124 · Cited by 22 · see citing works
Fadhıl, M., & Zülkadir, U. (2020) · Animal Biotechnology · doi:10.1080/10495398.2020.1781148 · Cited by 21 · see citing works
Meng, X., Gao, Z., Liang, Y., et al. (2020) · Frontiers in Veterinary Science · doi:10.3389/fvets.2020.601064 · Cited by 21 · see citing works
Maternal Genetic History of Southern East Asians over the Past 12,000 Years
Liu, Y., Wang, T., Wu, X., Fan, X., Wang, W., Xie, G., Li, Z., Yang, Q., Cao, P., Yang, R., et al. (2021) · Journal of Genetics and Genomics · doi:10.1016/j.jgg.2021.06.002 · Cited by 21 · see citing works
Self-citationLi, Y., Wang, S., Zhang, Z., Luo, J., Lin, G. L., Deng, W., Guo, Z., Han, F., Wang, L., Li, J., et al. (2023) · Molecular Biology and Evolution · doi:10.1093/molbev/msad006 · Cited by 20 · see citing works
Pacheco, H. A., Hernández, R. O., Chen, S., Neave, H. W., Pempek, J. A., & Brito, L. F. (2024) · Journal of Dairy Science · doi:10.3168/jds.2024-24953 · Cited by 20 · see citing works
Ancient DNA Extracted from Danish Aurochs (Bos Primigenius): Genetic Diversity and Preservation
Gravlund, P., Aaris-Sørensen, K., Hofreiter, M., Meyer, M., Bollback, J. P., & Noe-Nygaard, N. (2012) · Annals of Anatomy - Anatomischer Anzeiger · doi:10.1016/j.aanat.2011.10.011 · Cited by 19 · see citing works
Igoshin, A., Yudin, N., Aitnazarov, R., Yurchenko, A. A., & Larkin, D. M. (2021) · Life · doi:10.3390/life11090959 · Cited by 19 · see citing works
Bartens, M.-C., Gibson, A. J., Etherington, G. J., Di Palma, F., Holder, A., Werling, D., & Willcocks, S. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.764390 · Cited by 19 · see citing works
Rajawat, D., Panigrahi, M., Nayak, S. S., Ghildiyal, K., Sharma, A., Kumar, H., Parida, S., Bhushan, B., Gaur, G. K., Mishra, B. P., et al. (2023) · Animal Biotechnology · doi:10.1080/10495398.2023.2240387 · Cited by 19 · see citing works
Alvarenga, A. B., Oliveira, H. R., Turner, S. P., Garcia, A., Retallick, K. J., Miller, S. P., & Brito, L. F. (2023) · Genetics Selection Evolution · doi:10.1186/s12711-023-00777-3 · Cited by 18 · see citing works
Ancient DNA Confirms Diverse Origins of Early Post-Columbian Cattle in the Americas
Delsol, N., Stucky, B. J., Oswald, J. A., Cobb, C. R., Emery, K. F., & Guralnick, R. (2023) · Scientific Reports · doi:10.1038/s41598-023-39518-3 · Cited by 17 · see citing works
Genomic Insights into the Population History and Adaptive Traits of Latin American Criollo Cattle
Ward, J. A., Ng'ang'a, S. I., Randhawa, I. A. S., McHugo, G. P., O'Grady, J. F., Flórez, J. M., Browne, J. A., Pérez O’Brien, A. M., Landaeta-Hernández, A. J., Garcia, J. F., et al. (2024) · Royal Society Open Science · doi:10.1098/rsos.231388 · Cited by 17 · see citing works
Pinto, L. F. B., Medrado, B. D., Pedrosa, V. B., & Brito, L. F. (2025) · Journal of Animal Breeding and Genetics · doi:10.1111/jbg.12874 · Cited by 17 · see citing works
Kunene, L. M., Muchadeyi, F. C., Hadebe, K., Mészáros, G., Sölkner, J., Dugmore, T., & Dzomba, E. F. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.832702 · Cited by 16 · see citing works
Ayuti, S. R., Lamid, M., Warsito, S. H., et al. (2024) · Open Veterinary Journal · doi:10.5455/ovj.2024.v14.i12.4 · Cited by 16 · see citing works
Naserkheil, M., Manzari, Z., Dang, C. G., Lee, S. S., & Park, M. N. (2022) · Current Issues in Molecular Biology · doi:10.3390/cimb44120414 · Cited by 15 · see citing works
Ayalew, W., Xiaoyun, W., Tarekegn, G. M., Tessema, T. S., Chu, M., Liang, C., Naboulsi, R., Van Damme, R., Bongcam-Rudloff, E., & Ping, Y. (2024) · BMC Genomics · doi:10.1186/s12864-024-10936-5 · Cited by 15 · see citing works
Effects of DGAT1 on Milk Performance in Sudanese Butana × Holstein Crossbred Cattle
Elzaki, S., Korkuć, P., Arends, D., Reissmann, M., & Brockmann, G. A. (2022) · Tropical Animal Health and Production · doi:10.1007/s11250-022-03141-7 · Cited by 14 · see citing works
Ozdemir, M., Motmain, Z., Ekinci, K., & Saygılı, E. (2025) · Biochemical Genetics · doi:10.1007/s10528-024-10706-8 · Cited by 14 · see citing works
Structural Variations Associated with Adaptation and Coat Color in Qinghai-Tibetan Plateau Cattle
Xia, X., Wang, F., Luo, X., Li, S., Lyu, Y., Zheng, Y., Ma, Z., Qu, K., Song, R., Liu, J., et al. (2025) · Advanced Science · doi:10.1002/advs.202503258 · Cited by 14 · cited 4× · see citing works
“Structural variation analyses further identified genes involved in erythropoiesis and angiogenesis ( SSH2 , VGLL4 , PLCB1 , HPSE2 , HPSE ) and energy metabolism ( SORD , NDUFB6 , SARDH , ADIPOQ ) [89].”
InfluentialGanguly, I., Jeevan, C., Singh, S., Dixit, S. P., Sodhi, M., Ranjan, A., Kumar, S., & Sharma, A. (2020) · Scientific Reports · doi:10.1038/s41598-020-66133-3 · Cited by 13 · see citing works
Jang, J., Jung, J., Lee, Y. H., Lee, S., Baik, M., & Kim, H. (2023) · Scientific Data · doi:10.1038/s41597-023-02453-z · Cited by 13 · see citing works
Ristanić, M., Zorc, M., Glavinić, U., et al. (2024) · Animals · doi:10.3390/ani14050669 · Cited by 13 · see citing works
Bovine HSD17B8 Gene and Its Relationship with Growth and Meat Quality Traits
Ma, Y., Chen, N., Li, F., Fu, W., Han, Y., Chang, Y., Jiang, X., Li, J., Bai, Y., & Tan, X. (2015) · Science Bulletin · doi:10.1007/s11434-015-0882-0 · Cited by 12 · see citing works
Molecular Characterization of Coat Color Gene in Sahiwal versus Karan Fries Bovine
Goud, T. S., Upadhyay, R. C., Pichili, V. B. R., Onteru, S. K., & Chadipiralla, K. (2021) · Journal of Genetic Engineering and Biotechnology · doi:10.1186/s43141-021-00117-2 · Cited by 11 · see citing works
Ancient Genomes Illuminate the Origins and Dynamic History of East Asian Cattle
Cai, D., Kim, D., Zhang, N., Wang, X., Li, T., Li, J., Li, C., Lian, S., Shao, X., Hu, S., et al. (2025) · Science · doi:10.1126/science.adu9904 · Cited by 11 · see citing works
Maternal genetic and phylogenetic characteristics of domesticated cattle in northwestern China
Cai, Y., Jiao, T., Lei, Z., Liu, L., & Zhao, S. (2018) · PLOS ONE · doi:10.1371/journal.pone.0209645 · Cited by 10 · see citing works
Epidemiology of Bovine Trypanosomosis and Vector Distribution in Didessa River Basin, Ethiopia
Meharenet, B., Desta, T., Lelisa, K., et al. (2020) · Acta Parasitologica · doi:10.2478/s11686-020-00214-1 · Cited by 10 · see citing works
Identification of two new recessive MC1R alleles in red‐coloured Evolèner cattle and other breeds
Hauser, M., Signer‐Hasler, H., Küttel, L., Capitan, A., Guldbrandtsen, B., Hinrichs, D., Flury, C., Seefried, F. R., & Drögemüller, C. (2022) · Animal Genetics · doi:10.1111/age.13206 · Cited by 10 · see citing works
Longevity and the association with cattle health in Dutch dairy farms
Bisschop, P. I. H., Santman-Berends, I. M. G. A., Nijhoving, G. H., et al. (2022) · Preventive Veterinary Medicine · doi:10.1016/j.prevetmed.2022.105797 · Cited by 10 · see citing works
Jakaria, J., Kholijah, K., Darwati, S., Rahman, Q., Daulay, W. L., Suhendro, I., Londra, I. M., Ulum, M. F., & Noor, R. R. (2023) · Veterinary World · doi:10.14202/vetworld.2023.1312-1318 · Cited by 10 · see citing works
Wu, X., Pei, J., Xiong, L., Ge, Q., Bao, P., Liang, C., Yan, P., & Guo, X. (2025) · BMC Genomics · doi:10.1186/s12864-025-11328-z · Cited by 10 · see citing works
Guan, X., Xiang, W., Qu, K., Ahmed, Z., Liu, J., Cai, M., Zhang, J., Chen, N., Lei, C., & Huang, B. (2025) · BMC Genomics · doi:10.1186/s12864-024-11033-3 · Cited by 10 · see citing works
(2021) · doi:10.5772/intechopen.78869 · Cited by 9 · see citing works
Zhang, H., Wang, A., Xiao, W., Mi, S., Hu, L., Brito, L. F., Guo, G., Yan, Q., Chen, S., & Wang, Y. (2024) · Journal of Dairy Science · doi:10.1016/j.jods.2024.10.001 · Cited by 9 · see citing works
Gothwal, A., Magotra, A., Bangar, Y. C., Malik, B. S., Yadav, A. S., & Garg, A. R. (2023) · Animal Biotechnology · doi:10.1080/10495398.2022.2109041 · Cited by 8 · cited 2× · see citing works
“Individuals carrying the lysine (K) allele exhibit a higher milk fat percentage in both Holstein and other indigenous dairy cattle breeds, whereas those with the alanine (A) allele show higher milk protein content and total milk yield [151–154].”
Ancient Mitochondrial Genomes Provide New Clues to the Origin of Domestic Cattle in China
Zhang, N., Shao, X., Guo, Y., Zhang, X., Zhou, Y., Yuan, J., Tang, Z., Hu, S., Minyaev, S. S., & Cai, D. (2023) · Genes · doi:10.3390/genes14071313 · Cited by 8 · see citing works
Liu, G. E. (2025) · Journal of Animal Science and Biotechnology · doi:10.1186/s40104-025-01294-7 · Cited by 8 · see citing works
Cattle breeds – contemporary views on their origin and criteria for classification: a review
Institute of Animal Production and Fisheries, S. U. O. N. S. A. H., & Guliński, P. (2022) · Acta Scientiarum Polonorum Zootechnica · doi:10.21005/asp.2021.20.2.01 · Cited by 7 · see citing works
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Sarath Kumar, T., Singh, S., Ganguly, I., & Dixit, S. P. (2025) · Gene · doi:10.1016/j.gene.2024.149096 · Cited by 7 · see citing works
Genome-wide association study of genetic markers of coat color patterns in Sumatran native cattle
Hartati, H., Putra, W. P. B., Handiwirawan, E., Ramon, E., Firison, J., Zubir, Z., Suretno, N. D., Mariyono, M., Yusriani, Y., Robba, D. K., et al. (2024) · Veterinary World · doi:10.14202/vetworld.2024.2537-2543 · Cited by 7 · see citing works
Innovations in Cattle Breeding Technology: Prospects in the Era of Gene Editing
Yu, W., Cui, X., & Chen, Z. (2025) · Animals · doi:10.3390/ani15101364 · Cited by 7 · see citing works
Crum, T. E., Schnabel, R. D., Decker, J. E., & Taylor, J. F. (2021) · Frontiers in Genetics · doi:10.3389/fgene.2021.758394 · Cited by 6 · see citing works
Trigo, B. B., Alves, N. F., Milanesi, M., Garcia, J. F., Terefe, E., Hanotte, O., Tijjani, A., & Utsunomiya, Y. T. (2023) · Animal Genetics · doi:10.1111/age.13333 · Cited by 6 · see citing works
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Wang, L., Yan, X., Wu, H., Wang, F., Zhong, Z., Zheng, G., Xiao, Q., Wu, K., & Na, W. (2024) · Animals · doi:10.3390/ani14050775 · Cited by 5 · see citing works
Using expression data to fine map QTL associated with fertility in dairy cattle
van den Berg, I., Chamberlain, A. J., MacLeod, I. M., Nguyen, T. V., Goddard, M. E., Xiang, R., Mason, B., Meier, S., Phyn, C. V. C., Burke, C. R., et al. (2024) · Genetics Selection Evolution · doi:10.1186/s12711-024-00912-8 · Cited by 5 · see citing works
A Pilot Detection and Associate Study of Gene Presence-Absence Variation in Holstein Cattle
Boschiero, C., Neupane, M., Yang, L., Schroeder, S. G., Tuo, W., Ma, L., Baldwin, R. L., Van Tassell, C. P., & Liu, G. E. (2024) · Animals · doi:10.3390/ani14131921 · Cited by 5 · see citing works
Advancing the Indian Cattle Pangenome: Characterizing Non-Reference Sequences in Bos indicus
Azam, S., Sahu, A., Pandey, N. K., Neupane, M., Van Tassell, C. P., Rosen, B. D., Gandham, R. K., Rath, S. N., & Majumdar, S. S. (2025) · Journal of Animal Science and Biotechnology · doi:10.1186/s40104-024-01133-1 · Cited by 5 · see citing works
Constructing a Draft Indian Cattle Pangenome Using Short-Read Sequencing
Azam, S., Sahu, A., Pandey, N. K., Neupane, M., Van Tassell, C. P., Rosen, B. D., Gandham, R. K., Rath, S. N., & Majumdar, S. S. (2025) · Communications Biology · doi:10.1038/s42003-025-07978-0 · Cited by 5 · see citing works
Analysis of genomic selection characteristics of local cattle breeds in Gansu
Cai, B., Kang, Y., Xiong, L., Pei, J., Ge, Q., Wu, X., Gan, M., & Guo, X. (2025) · BMC Genomics · doi:10.1186/s12864-025-11753-0 · Cited by 5 · see citing works
Mulim, H. A., Campos, G. S., Cardoso, F. F., Pedrosa, V. B., Latimer, K., Upperman, L. R., Knowles, A. J., Garcia, A., Retallick, K., Miller, S., et al. (2026) · Mammalian Genome · doi:10.1007/s00335-025-10188-y · Cited by 5 · see citing works
Ruiz-De-La-Cruz, G., Sifuentes-Rincón, A. M., Paredes-Sánchez, F. A., Parra-Bracamonte, G. M., Casas, E., Riley, D., Perry, G. A., Welsh, T. H., & Randel, R. (2024) · Molecular Biology Reports · doi:10.1007/s11033-024-09264-4 · Cited by 4 · see citing works
Ruiz-De-La-Cruz, G., Welsh, T. H., Randel, R. D., & Sifuentes-Rincón, A. M. (2024) · Genes · doi:10.3390/genes15080981 · Cited by 4 · see citing works
Genetic basis and origin of coat color in Leiqiong cattle
Fu-Nong, L., Chen, S., Shu-Jun, C., Hojjat, A. N., Xin-Yu, W., Rasmus, H., De-Xiang, H., Hong, C., Jie, L., Shi-Heng, N., et al. (2025) · 动物学研究 · doi:10.24272/j.issn.2095-8137.2024.442 · Cited by 4 · see citing works
Wang, X., Xu, L., Zhou, D., et al. (2025) · Frontiers in Genetics · doi:10.3389/fgene.2025.1577647 · Cited by 4 · see citing works
McHugo, G. P., Ward, J. A., Browne, J. A., O’Gorman, G. M., Meade, K. G., Hill, E. W., Hall, T. J., & MacHugh, D. E. (2025) · doi:10.1101/2025.01.31.635858 · Cited by 4 · see citing works
Structural and epistatic regulatory variants cause hallmark white spotting in cattle
Jivanji, S., Wilkinson, E. L., Tang, L., Tiplady, K., Yeates, A., Harland, C., Gray, C., Couldrey, C., Worth, G. M., Gamache, I., et al. (2025) · Science Advances · doi:10.1126/sciadv.adt5913 · Cited by 4 · see citing works
Verardo, L. L., Otto, P. I., Machado, M. A., do Carmo Panetto, J. C., Faza, D. R. D. L. R., Alves do Egito, A., Vitorino, A. S. M., Carolino, M. I. C. M., Carolino, N. P., & da Silva, M. V. G. B. (2024) · Livestock Science · doi:10.1016/j.livsci.2024.105455 · Cited by 3 · see citing works
Analysis of SLICK allele in African taurine and Zebu cattle breeds
Gebeyehu, S., Heins, B., Sonstegard, T. S., et al. (2024) · Animal Genetics · doi:10.1111/age.13499 · Cited by 3 · see citing works
De novo genome assembly of Yanbian cattle using PacBio HiFi and Hi-C combined with RNA-seq data
Fang, W., Cao, Y., Liu, Y., Wu, J., Li, M., Xiao, C., Li, X., Lv, A., Zhao, Y., & Cao, Y. (2025) · Scientific Data · doi:10.1038/s41597-025-05689-z · Cited by 3 · see citing works
Self-citationFariha, Shabbir, M. S., Anwar, S., Azmat, H., Majeed, M. B. B., & Kaul, H. (2025) · Animal Genetics · doi:10.1111/age.70048 · Cited by 3 · see citing works
Endalu, H., Abdurahman, A., & Abafaji, G. (2023) · Covid Research and Treatment · doi:10.58489/2836-3604/006 · Cited by 2 · see citing works
Revisiting Aurochs Haplogroup C: Paleogenomic Perspectives from Northeastern China
Zhu, Y., Hou, X., Zhao, J., Xiao, B., Song, S., Zou, X., Liu, S., Hofreiter, M., & Lai, X. (2025) · Genes · doi:10.3390/genes16060639 · Cited by 2 · see citing works
Cai, J., Liu, Y., Gao, Y., Liu, G. E., Da, Y., & Ma, L. (2025) · Animals · doi:10.3390/ani15152247 · Cited by 2 · see citing works
Self-citationHigh-quality phased genome assemblies of line-bred Korean Hanwoo cattle
Shin, J. W., Kim, H. J., Jin, S., Chung, Y., Lee, S. H., & Kim, J. (2025) · Scientific Data · doi:10.1038/s41597-025-06069-3 · Cited by 2 · see citing works
Siwele, T. T., Mtileni, B. J., Nephawe, K. A., et al. (2025) · Tropical Animal Health and Production · doi:10.1007/s11250-025-04437-0 · Cited by 1 · see citing works
Mincu-Iorga, M., Mizeranschi, A. E., Gavojdian, D., Nicolae, I., Kusza, S., & Ilie, D. E. (2025) · Animals · doi:10.3390/ani15121766 · Cited by 1 · see citing works
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Cited by
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- Authors
- Liu, Y., Dao, W., Gao, R., Fan, X., Yang, R., & Miao, Y.
- Affiliations
- Yunnan Agricultural University (CN)
- Corresponding author
- Yang, Ruifei
- Miao, Yongwang
- Venue
- Animals
- Publisher
- MDPI AG
- Published
- 2026-03-02
- Volume
- 16
- Issue
- 5
- Pages
- 776
- ISSN
- 2076-2615 (ISSN-L)
- PMC
- PMC12984403
- OpenAlex
- W7133302624
- Cited by
- 1
- References
- 202
- Citations by year
- 2026: 1
- FWCI
- 3.97
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Animals (publishedVersion, cc-by)
- PubMed (publishedVersion)
- PubMed Central (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- National Natural Science Foundation of China (32260822, 31760659)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic and phenotypic traits in livestock
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Forensic and Genetic Research
- Keywords
- cattle domestication, cattle, Bos indicus, taurine cattle, admixture, pan-genome, natural selection, selective breeding, phenotypic diversity, climate resilience, disease resistance, molecular breeding, paleogenomics, population genetics
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-10.
Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-10.
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