Cited by 303Probiotics and Fermented FoodsGut microbiota and healthReproductive tract infections research

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The food-gut axis: lactic acid bacteria and their link to food, the gut microbiome and human health

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De Filippis, Francesca, Pasolli, Edoardo, Ercolini, Danilo·2020·FEMS Microbiology Reviews

DOI 10.1093/femsre/fuaa015PMC PMC7391071

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Abstract

Lactic acid bacteria (LAB) are present in foods, the environment and the animal gut, although fermented foods (FFs) are recognized as the primary niche of LAB activity. Several LAB strains have been studied for their health-promoting properties and are employed as probiotics. FFs are recognized for their potential beneficial effects, which we review in this article. They are also an important source of LAB, which are ingested daily upon FF consumption. In this review, we describe the diversity of LAB and their occurrence in food as well as the gut microbiome. We discuss the opportunities to study LAB diversity and functional properties by considering the availability of both genomic and metagenomic data in public repositories, as well as the different latest computational tools for data analysis. In addition, we discuss the role of LAB as potential probiotics by reporting the prevalence of key genomic features in public genomes and by surveying the outcomes of LAB use in clinical trials involving human subjects. Finally, we highlight the need for further studies aimed at improving our knowledge of the link between LAB-fermented foods and the human gut from the perspective of health promotion.

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Changes in bile acids, FGF-19 and sterol absorption in response to bile salt hydrolase active L. reuteri NCIMB 30242
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Probiotics modulate the gut microbiota composition and immune responses in patients with atopic dermatitis: a pilot study
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Crying Time and RORγ/FOXP3 Expression in Lactobacillus reuteri DSM17938-Treated Infants with Colic: A Randomized Trial
Savino, F., Garro, M., Montanari, P., Galliano, I., & Bergallo, M. (2017) · The Journal of Pediatrics · doi:10.1016/j.jpeds.2017.08.062 · Cited by 86
Faecal levels of Bifidobacterium and Clostridium coccoides but not plasma lipopolysaccharide are inversely related to insulin and HOMA index in women
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Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products
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Probiotic supplementation increases obesity with no detectable effects on liver fat or gut microbiota in obese Hispanic adolescents: a 16‐week, randomized, placebo‐controlled trial
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FoodMicrobionet: A Database for the Visualisation and Exploration of Food Bacterial Communities Based on Network Analysis
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A Randomized, Double-Blind, Placebo-Controlled Trial: The Efficacy of Multispecies Probiotic Supplementation in Alleviating Symptoms of Irritable Bowel Syndrome Associated with Constipation
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Probiotic Lactobacillus rhamnosus GG therapy and microbiological programming in infantile colic: a randomized, controlled trial
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Probiotic Soy Product Supplemented with Isoflavones Improves the Lipid Profile of Moderately Hypercholesterolemic Men: A Randomized Controlled Trial
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Study of duodenal bacterial communities by 16S rRNA gene analysis in adults with active celiac disease vs non-celiac disease controls
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Mining metagenomic whole genome sequences revealed subdominant but constant Lactobacillus population in the human gut microbiota
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Gut Microbiota is Not Modified by Randomized, Double-Blind, Placebo-Controlled Trial of VSL#3 in Diarrhea-Predominant Irritable Bowel Syndrome
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Probiotic and synbiotic supplementation could improve metabolic syndrome in prediabetic adults: A randomized controlled trial
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The Variable Regions of Lactobacillus rhamnosus Genomes Reveal the Dynamic Evolution of Metabolic and Host-Adaptation Repertoires
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The effects of synbiotic supplementation on insulin resistance/sensitivity, lipid profile and total antioxidant capacity in women with gestational diabetes mellitus: A randomized double blind placebo controlled clinical trial
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The Effects of Synbiotic Supplementation on Body Mass Index, Metabolic and Inflammatory Biomarkers, and Appetite in Patients with Metabolic Syndrome: A Triple-Blind Randomized Controlled Trial
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Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease
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Comparative Genomics Analysis of Streptococcus Isolates from the Human Small Intestine Reveals their Adaptation to a Highly Dynamic Ecosystem
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Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp. lactis Bi-07
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Symposium review: Genomic investigations of flavor formation by dairy microbiota
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Correlation of Lactobacillus rhamnosus Genotypes and Carbohydrate Utilization Signatures Determined by Phenotype Profiling
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Fermented food intake is associated with a reduced likelihood of atopic dermatitis in an adult population (Korean National Health and Nutrition Examination Survey 2012-2013)
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A mixture of Lactobacillus species isolated from traditional fermented foods promote recovery from antibiotic-induced intestinal disruption in mice
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The effects of synbiotic supplementation on thyroid function and inflammation in hypothyroid patients: a randomized, double-blind, placebo-controlled trial
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The Effectiveness of Lactobacillus Beverages in Controlling Infections among the Residents of an Aged Care Facility: A Randomized Placebo-Controlled Double-Blind Trial
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Flagged first, then by citations

Research works printed but not linked: 3

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Sorted by citations

Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome.
Carlino, N., Blanco-Míguez, A., Punčochář, M., Mengoni, C., Pinto, F., Tatti, A., Manghi, P., Armanini, F., Avagliano, M., Barcenilla, C., et al. (2024) · Cell · doi:10.1016/j.cell.2024.07.039 · Cited by 146
Self-citation
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Self-citation

See all 303

Authors: De Filippis, F., Pasolli, E., & Ercolini, D.
Affiliations: Department of Agricultural Sciences, University of Naples Federico II, via Università, 100, 80055, Portici (NA) Italy
University of Naples Federico II (IT)
Corresponding author: Ercolini, Danilo
ORCID: Pasolli, Edoardo
Ercolini, Danilo
Venue: FEMS Microbiology Reviews
Publisher: Oxford University Press (OUP)
Published: 2020-06-18
Volume: 44
Issue: 4
Pages: 454-489
ISSN: 0168-6445 (ISSN-L)
1574-6976
DOI: 10.1093/femsre/fuaa015
PMC: PMC7391071
OpenAlex: W3036864319
Cited by: 303
References: 361
Citations by year: 2026: 42 · 2025: 62 · 2024: 63 · 2023: 54 · 2022: 50 · 2021: 25 · 2020: 6
FWCI: 2.85
Type: journal article
Language: en
Open access: hybrid
doi.org
Licence: cc-by
creativecommons.org/licenses/by/4.0/ (vor)
Locations: FEMS Microbiology Reviews (publishedVersion, cc-by)
PubMed Central (publishedVersion, cc-by)
PubMed (publishedVersion)
Funders: Horizon 2020 (818368)
Ministry of Agricultural, Food, Forestry and Tourism Policies (790)
Topics: Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
Life Sciences › Immunology and Microbiology › Microbiology › Reproductive tract infections research
Keywords: lactic acid bacteria, fermented foods, gut microbiota, probiotics, health promotion, metagenomics, genomic features, clinical trials, human health
MeSH terms: Gastrointestinal Microbiome, Food Microbiology, Health, Humans, Lactobacillales

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The food-gut axis: lactic acid bacteria and their link to food, the gut microbiome and human health

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