Ercolini, Danilo

A communal catalogue reveals Earth's multiscale microbial diversity

Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., Prill, R. J., Tripathi, A., Gibbons, S. M., Ackermann, G., et al. (2017) · Nature

Microbial Community Ecology and PhysiologyGenomics and Phylogenetic Studies

Cited by 2,684

High-level adherence to a Mediterranean diet beneficially impacts the gut microbiota and associated metabolome

De Filippis, F., Pellegrini, N., Vannini, L., Jeffery, I. B., La Storia, A., Laghi, L., Serrazanetti, D. I., Di Cagno, R., Ferrocino, I., Lazzi, C., et al. (2016) · Gut

Gut microbiota and healthNutritional Studies and Diet

Cited by 1,638

A Selected Core Microbiome Drives the Early Stages of Three Popular Italian Cheese Manufactures

De Filippis, F., La Storia, A., Stellato, G., Gatti, M., & Ercolini, D. (2014) · PLoS ONE

Probiotics and Fermented FoodsGut microbiota and health

Cited by 1,398

Prevotella Diversity, Niches and Interactions with the Human Host

Tett, A., Pasolli, E., Masetti, G., Ercolini, D., & Segata, N. (2021) · Nature Reviews Microbiology

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 748

Membrane toxicity of antimicrobial compounds from essential oils

Di Pasqua, R., Betts, G., Hoskins, N., Edwards, M., Ercolini, D., & Mauriello, G. (2007) · Journal of Agricultural and Food Chemistry

Essential Oils and Antimicrobial ActivityAntimicrobial agents and applications

Cited by 648

PCR-DGGE fingerprinting: novel strategies for detection of microbes in food

Ercolini, D. (2004) · Journal of Microbiological Methods

Probiotics and Fermented FoodsBacterial Identification and Susceptibility Testing

Cited by 624

Mediterranean diet intervention in overweight and obese subjects lowers plasma cholesterol and causes changes in the gut microbiome and metabolome independently of energy intake

Meslier, V., Laiola, M., Roager, H. M., De Filippis, F., Roume, H., Quinquis, B., Giacco, R., Mennella, I., Ferracane, R., Pons, N., et al. (2020) · Gut

Gut microbiota and healthNutritional Studies and Diet

Cited by 583

High-Throughput Sequencing and Metagenomics: Moving Forward in the Culture-Independent Analysis of Food Microbial Ecology

Ercolini, D. (2013) · Applied and Environmental Microbiology

Genomics and Phylogenetic StudiesProbiotics and Fermented Foods

Cited by 479

The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

Tett, A., Huang, K. D., Asnicar, F., Fehlner-Peach, H., Pasolli, E., Karcher, N., Armanini, F., Manghi, P., Bonham, K., Zolfo, M., et al. (2019) · Cell Host & Microbe

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 476

Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome

Pasolli, E., De Filippis, F., Mauriello, I. E., Cumbo, F., Walsh, A. M., Leech, J., Cotter, P. D., Segata, N., & Ercolini, D. (2020) · Nature Communications

Probiotics and Fermented FoodsGut microbiota and health

Cited by 367

Antibiotic-induced microbiota perturbation causes gut endocannabinoidome changes, hippocampal neuroglial reorganization and depression in mice

Guida, F., Turco, F., Iannotta, M., De Gregorio, D., Palumbo, I., Sarnelli, G., Furiano, A., Napolitano, F., Boccella, S., Luongo, L., et al. (2018) · Brain Behavior and Immunity

Gut microbiota and healthTryptophan and brain disorders

Cited by 367

The food-gut axis: lactic acid bacteria and their link to food, the gut microbiome and human health

De Filippis, F., Pasolli, E., & Ercolini, D. (2020) · FEMS Microbiology Reviews

Probiotics and Fermented FoodsGut microbiota and health

Cited by 303

Metatranscriptomics reveals temperature-driven functional changes in microbiome impacting cheese maturation rate.

De Filippis, F., Genovese, A., Ferranti, P., Gilbert, J. A., & Ercolini, D. (2016) · Scientific Reports

Probiotics and Fermented FoodsFermentation and Sensory Analysis

Cited by 196

“Remake” by high-throughput sequencing of the microbiota involved in the production of water buffalo mozzarella cheese

Ercolini, D., De Filippis, F., La Storia, A., & Iacono, M. (2012) · Applied and Environmental Microbiology

Probiotics and Fermented FoodsFermentation and Sensory Analysis

Cited by 175

Changes in the proteome of Salmonella enterica serovar Thompson as stress adaptation to sublethal concentrations of thymol

Di Pasqua, R., Mamone, G., Ferranti, P., Ercolini, D., & Mauriello, G. (2010) · PROTEOMICS

Bacterial Genetics and BiotechnologyEssential Oils and Antimicrobial Activity

Cited by 171

Recent Past, Present, and Future of the Food Microbiome

De Filippis, F., Parente, E., & Ercolini, D. (2018) · Annual Review of Food Science and Technology

Probiotics and Fermented FoodsGut microbiota and health

Cited by 163

Newly Explored Faecalibacterium Diversity Is Connected to Age, Lifestyle, Geography, and Disease

De Filippis, F., Pasolli, E., & Ercolini, D. (2020) · Current Biology

Gut microbiota and healthGenomics and Phylogenetic Studies

Cited by 161

Atomic force microscopy analysis shows surface structure changes in carvacrol-treated bacterial cells

La Storia, A., Ercolini, D., Marinello, F., Di Pasqua, R., Villani, F., & Mauriello, G. (2011) · Research in Microbiology

Essential Oils and Antimicrobial ActivityAntimicrobial agents and applications

Cited by 156

Food Design To Feed the Human Gut Microbiota

Ercolini, D., & Fogliano, V. (2018) · Journal of Agricultural and Food Chemistry

Gut microbiota and healthMicrobial Metabolites in Food Biotechnology

Cited by 146

The Same Microbiota and a Potentially Discriminant Metabolome in the Saliva of Omnivore, Ovo-Lacto-Vegetarian and Vegan Individuals

De Filippis, F., Vannini, L., La Storia, A., Laghi, L., Piombino, P., Stellato, G., Serrazanetti, D. I., Gozzi, G., Turroni, S., Ferrocino, I., et al. (2014) · PLoS ONE

Oral microbiology and periodontitis researchGut microbiota and health

Cited by 146

Salivary Microbiota and Metabolome Associated with Celiac Disease

Francavilla, R., Ercolini, D., Piccolo, M., Vannini, L., Siragusa, S., De Filippis, F., De Pasquale, I., Di Cagno, R., Di Toma, M., Gozzi, G., et al. (2014) · Applied and Environmental Microbiology

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 111

Zooming into food-associated microbial consortia: a “cultural” evolution

Cocolin, L., & Ercolini, D. (2015) · Current Opinion in Food Science

Probiotics and Fermented FoodsGut microbiota and health

Cited by 93

FoodMicrobionet: A Database for the Visualisation and Exploration of Food Bacterial Communities Based on Network Analysis

Parente, E., Cocolin, L., De Filippis, F., Zotta, T., Ferrocino, I., O'Sullivan, O., Neviani, E., De Angelis, M., Cotter, P. D., & Ercolini, D. (2016) · International Journal of Food Microbiology

Probiotics and Fermented FoodsGut microbiota and health

Cited by 82

Strain-Level Diversity Analysis of Pseudomonas fragi after In Situ Pangenome Reconstruction Shows Distinctive Spoilage-Associated Metabolic Traits Clearly Selected by Different Storage Conditions

De Filippis, F., La Storia, A., Villani, F., & Ercolini, D. (2019) · Applied and Environmental Microbiology

Meat and Animal Product QualityGenomics and Phylogenetic Studies

Cited by 47