MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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- The genomic ecosystem of transposable elements in maizeMichelle C. Stitzer, Sarah N. Anderson, Nathan M. Springer, Jeffrey Ross‐Ibarra · 2021 · PLoS Genetics
- Incomplete lineage sorting and phenotypic evolution in marsupialsShaohong Feng, Ming Bai, Iker Rivas-González, Cai Li, Shiping Liu, Yijie Tong, Haidong Yang, Guangji Chen, Duo Xie, Karen E. Sears et al. · 2022 · Cell
- The critically endangered vaquita is not doomed to extinction by inbreeding depressionJacqueline A. Robinson, Christopher C. Kyriazis, Sergio F. Nigenda‐Morales, Annabel C. Beichman, Lorenzo Rojas‐Bracho, Kelly M. Robertson, Michaël C. Fontaine, Robert K. Wayne, Kirk E. Lohmueller, Barbara L. Taylor et al. · 2022 · Science
- Fungal diversity notes 1512–1610: taxonomic and phylogenetic contributions on genera and species of fungal taxaRuvishika S. Jayawardena, Kevin D. Hyde, Song Wang, Ya-Ru Sun, Nakarin Suwannarach, Phongeun Sysouphanthong, Mohamed A. Abdel‐Wahab, Faten Awad Abdel-Aziz, Pranami D. Abeywickrama, Vanessa Pereira de Abreu et al. · 2022 · Fungal Diversity
- Isolation of an archaeon at the prokaryote-eukaryote interfaceHiroyuki Imachi, Masaru Konishi Nobu, Nozomi Nakahara, Yuki Morono, Miyuki Ogawara, Yoshihiro Takaki, Yoshinori Takano, Katsuyuki Uematsu, Tetsuro Ikuta, Motoo Ito et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- RESCRIPt: Reproducible sequence taxonomy reference database management for the massesMichael Scott Robeson, Devon R. O’Rourke, Benjamin D. Kaehler, Michał Ziemski, Matthew R. Dillon, Jeffrey T. Foster, Nicholas A. Bokulich · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Non-photosynthetic predators are sister to red algaeGawryluk, Ryan M. R., Tikhonenkov, Denis V., Hehenberger, Elisabeth, Husnik, Filip, Mylnikov, Alexander P., Keeling, Patrick J. · 2019 · Nature
- A‐to‐I editing on tRNAs: Biochemical, biological and evolutionary implicationsAdrián Gabriel Torres, David Piñeyro, Liudmila Filonava, Travis H. Stracker, Eduard Batlle, Lluı́s Ribas de Pouplana · 2014 · FEBS Letters
- A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70 % ruleChuan Ku, William F. Martin · 2016 · BMC Biology
- Symptomatic Citrus trees reveal a new pathogenic lineage in Fusarium and two new Neocosmospora speciesMarcelo Sandoval‐Denis, Vladimiro Guarnaccia, G. Polizzi, Pedro Willem Crous · 2017 · Persoonia - Molecular Phylogeny and Evolution of Fungi
- A Human Bi-specific Antibody against Zika Virus with High Therapeutic PotentialJiaqi Wang, Marco Bardelli, Diego A. Espinosa, Mattia Pedotti, Thiam‐Seng Ng, Siro Bianchi, Luca Simonelli, Elisa X. Y. Lim, Mathilde Foglierini, Fabrizia Zatta et al. · 2017 · Cell
- Rapid Global Spread of wRi-like Wolbachia across Multiple DrosophilaMichael Turelli, Brandon S. Cooper, Kelly M. Richardson, Paul Ginsberg, Brooke Peckenpaugh, Chenling X. Antelope, Kevin J. Kim, Michael R. May, Antoine Abrieux, Derek A. Wilson et al. · 2018 · Current Biology
- Revisiting habitat and lifestyle transitions in Heteroptera (Insecta: Hemiptera): insights from a combined morphological and molecular phylogenyChristiane Weirauch, Randall T. Schuh, Gerasimos Cassis, Ward C. Wheeler · 2018 · Cladistics
- Synteny-based analyses indicate that sequence divergence is not the main source of orphan genesNikolaos Vakirlis, Anne‐Ruxandra Carvunis, Aoife McLysaght · 2020 · eLife
- Towards Large-Scale Integrative Taxonomy (LIT): Resolving the Data Conundrum for Dark TaxaEmily Hartop, Amrita Srivathsan, Fredrik Ronquist, Rudolf Meier · 2022 · Systematic Biology
- AspergillussectionNidulantes(formerlyEmericella): Polyphasic taxonomy, chemistry and biologyA J Chen, Jens C. Frisvad, Bing‐Da Sun, János Varga, Sándor Kocsubé́, Jan Dijksterhuis, D.H. Kim, S-B Hong, J. Houbraken, Robert A. Samson · 2016 · Studies in Mycology
- Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the OceanYosuke Nishimura, Hiroyasu Watai, Takashi Honda, Tomoko Mihara, Kimiho Omae, Simon Roux, Romain Blanc‐Mathieu, Keigo Yamamoto, Pascal Hingamp, Yoshihiko Sako et al. · 2017 · mSphere
- New Ceratocystis species associated with rapid death of Metrosideros polymorpha in Hawai`iIrene Barnes, Arista Fourie, Michael J. Wingfield, T. C. Harrington, Douglas McNew, Lionel S. Sugiyama, Blaine C. Luiz, Wade P. Heller, Lisa M. W. Keith · 2018 · Persoonia - Molecular Phylogeny and Evolution of Fungi
- Epidemiology of tick‐borne pathogens in the semi‐arid and the arid agro‐ecological zones of Punjab province, PakistanAbdul Rehman, Franz J. Conraths, Carola Sauter‐Louis, Jürgen Krücken, Ard Menzo Nijhof · 2018 · Transboundary and Emerging Diseases
- Phylogenomic Analysis of the Gammaproteobacterial Methanotrophs (Order Methylococcales) Calls for the Reclassification of Members at the Genus and Species LevelsFabini D. Orata, Jan P. Meier‐Kolthoff, Dominic Sauvageau, Lisa Y. Stein · 2018 · Frontiers in Microbiology
- Optimal markers for the identification of Colletotrichum speciesWillie Anderson dos Santos Vieira, Priscila Alves Bezerra, Anthony Carlos da Silva, Josiene Silva Veloso, Marcos Paz Saraiva Câmara, Vinson Patrick Doyle · 2019 · Molecular Phylogenetics and Evolution
- Evolution of self-compatibility by a mutant Sm-RNase in citrusMei Liang, Zonghong Cao, Andan Zhu, Yuanlong Liu, Mengqin Tao, Huayan Yang, Qiang Xu, Shaohua Wang, Junjie Liu, Yongping Li et al. · 2020 · Nature Plants
- A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatchSilvia Argimón, Corin Yeats, Richard Goater, Khalil Abudahab, Benjamin Taylor, Anthony P. Underwood, Leonor Sánchez-Busó, Vanessa Wong, Zoe A. Dyson, Satheesh Nair et al. · 2021 · Nature Communications
- Pandemic-scale phylogenomics reveals the SARS-CoV-2 recombination landscapeYatish Turakhia, Bryan P. Thornlow, Angie S. Hinrichs, Jakob McBroome, Nicolás Ayala, Cheng Ye, Kyle Smith, Nicola De Maio, David H. Haussler, Robert Lanfear et al. · 2022 · Nature
- What are the common anthracnose pathogens of tropical fruits?Udayanga, Dhanushka, Manamgoda, Dimuthu S., Liu, Xingzhong, Chukeatirote, Ekachai, Hyde, Kevin D. · 2013 · Fungal Diversity
- Evolutionary Analyses of GRAS Transcription Factors in AngiospermsAlberto Cenci, Mathieu Rouard · 2017 · Frontiers in Plant Science
- Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomesMichelle M. Leger, Martin Kolísko, Ryoma Kamikawa, Courtney W. Stairs, Keitaro Kume, Ivan Čepička, Jeffrey D. Silberman, Jan O. Andersson, Feifei Xu, Akinori Yabuki et al. · 2017 · Nature Ecology & Evolution
- Global patterns of Rhododendron diversity: The role of evolutionary time and diversification ratesNawal Shrestha, Zhiheng Wang, Xiangyan Su, Xiaoting Xu, Lisha Lyu, Yunpeng Liu, Dimitar Dimitrov, Jonathan D. Kennedy, Qinggang Wang, Zhiyao Tang et al. · 2018 · Global Ecology and Biogeography
- Transcriptome, proteome and draft genome of Euglena gracilisThankGod E. Ebenezer, Martin Zoltner, Alana Burrell, Anna Nenarokova, Anna M. G. Novák Vanclová, Binod Prasad, Petr Soukal, Carlos Santana‐Molina, Ellis C. O’Neill, Nerissa N. Nankissoor et al. · 2019 · BMC Biology
- Eighteen Coral Genomes Reveal the Evolutionary Origin of Acropora Strategies to Accommodate Environmental ChangesChuya Shinzato, Konstantin Khalturin, Jun G. Inoue, Yuna Zayasu, Miyuki Kanda, Mayumi Kawamitsu, Yuki Yoshioka, Hiroshi Yamashita, Go Suzuki, Noriyuki Satoh · 2020 · Molecular Biology and Evolution
- Global Brassicaceae phylogeny based on filtering of 1,000-gene datasetKasper P. Hendriks, Christiane Kiefer, Ihsan Ali Al-Shehbaz, C. Donovan Bailey, Alexander Hooft van Huysduynen, Lachezar A. Nikolov, Lars Nauheimer, Alexandre Rizzo Zuntini, Dmitry A. German, Andreas Franzke et al. · 2023 · Current Biology
- Myelin as a regulator of development of the microbiota-gut-brain axisKeogh, Ciara E., Kim, Danielle H.J., Pusceddu, Matteo M., Knotts, Trina A., Rabasa, Gonzalo, Sladek, Jessica A., Hsieh, Michael T., Honeycutt, Mackenzie, Brust-Mascher, Ingrid, Barboza, Mariana et al. · 2021 · Brain, Behavior, and Immunity
- The electrically conductive pili of Geobacter species are a recently evolved feature for extracellular electron transferDawn E. Holmes, Yan Dang, David J. F. Walker, Derek R. Lovley · 2016 · Microbial Genomics
- Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivoryKenji Fukushima, Xiaodong Fang, David Alvarez‐Ponce, Huimin Cai, Lorenzo Carretero‐Paulet, Cui Chen, Tien-Hao Chang, Kimberly M. Farr, Tomomichi Fujita, Yuji Hiwatashi et al. · 2017 · Nature Ecology & Evolution
- Dispersal assembly of rain forest tree communities across the Amazon basinKyle Graham Dexter, Matt Lavin, BENJAMIN MARLAND TORKE, Alex D. Twyford, Thomas A. Kursar, Phyllis D. Coley, Camilla Drake, Ruth Hollands, R. Toby Pennington · 2017 · Proceedings of the National Academy of Sciences
- Integrative and conjugative elements and their hosts: composition, distribution and organizationJean Cury, Marie Touchon, Eduardo P. C. Rocha · 2017 · Nucleic Acids Research
- New and Preliminary Evidence on Altered Oral and Gut Microbiota in Individuals with Autism Spectrum Disorder (ASD): Implications for ASD Diagnosis and Subtyping Based on Microbial BiomarkersXuejun Kong, Jun Liu, Murat Çetinbaş, Ruslan I. Sadreyev, Madelyn Koh, Hui Yu Huang, Adetaye Adeseye, Puhan He, Junli Zhu, H. Russell et al. · 2019 · Nutrients
- A serine/threonine protein kinase encoding gene KERNEL NUMBER PER ROW6 regulates maize grain yieldHaitao Jia, Manfei Li, Weiya Li, Lei Liu, Yinan Jian, Zhixing Yang, Xiaomeng Shen, Qiang Ning, Yanfang Du, Ran Zhao et al. · 2020 · Nature Communications
- Molecular Architecture of Early Dissemination and Massive Second Wave of the SARS-CoV-2 Virus in a Major Metropolitan AreaScott Wesley Long, Randall J. Olsen, Paul A. Christensen, David W. Bernard, James J. Davis, Maulik P. Shukla, Marcus Nguyen, Matthew Ojeda Saavedra, Prasanti Yerramilli, Layne Pruitt et al. · 2020 · mBio
- Cenote-Taker 2 democratizes virus discovery and sequence annotationMichael J. Tisza, Anna K. Belford, Guillermo Domínguez‐Huerta, Benjamin Bolduc, Matthew B. Sullivan, Christopher B. Buck · 2020 · Virus Evolution
- Mercury methylation by metabolically versatile and cosmopolitan marine bacteriaHeyu Lin, David Benjamin Ascher, Yoochan Myung, Carl H. Lamborg, Steven Hallam, Caitlin M. Gionfriddo, Kathryn E. Holt, John W. Moreau · 2021 · The ISME Journal
- Keeping up with the Bacillus cereus group: taxonomy through the genomics era and beyondLaura M. Carroll, Rachel A. Cheng, Martin Wiedmann, Jasna Kovač · 2021 · Critical Reviews in Food Science and Nutrition
- Fungal Planet description sheets: 1182–1283Pedro Willem Crous, Don Arthur Cowan, Gillian Maggs‐Kölling, Neriman Yılmaz, R. Thangavel, Michael J. Wingfield, Machiel Evert Noordeloos, Bálint Dima, Tor Erik Brandrud, Gerrit Maarten Jansen et al. · 2021 · Persoonia - Molecular Phylogeny and Evolution of Fungi
- Timing the evolution of antioxidant enzymes in cyanobacteriaJoanne Sarah Boden, Kurt O. Konhauser, Leslie J. Robbins, Patricia Sánchez‐Baracaldo · 2021 · Nature Communications
- Major episodes of horizontal gene transfer drove the evolution of land plantsJianchao Ma, Shuanghua Wang, Xiaojing Zhu, Guiling Sun, Guanxiao Chang, Linhong Li, Xiangyang Hu, Shouzhou Zhang, Yun Zhou, Chun‐Peng Song et al. · 2022 · Molecular Plant
- Convergent evolution of SARS-CoV-2 Omicron subvariants leading to the emergence of BQ.1.1 variantJumpei Ito, Rigel Suzuki, Keiya Uriu, Yukari Itakura, Jiří Zahradník, Kanako Kimura, Sayaka Deguchi, Lei Wang, Spyros Lytras, Tomokazu Tamura et al. · 2023 · Nature Communications
- Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequencesDaqi Yu, Yandong Ren, Masahiro Uesaka, Alan J. S. Beavan, Matthieu Muffato, Jieyu Shen, Yongxin Li, Iori Sato, Wenting Wan, James Clark et al. · 2024 · Nature Ecology & Evolution
- A specialized histone H1 variant is required for adaptive responses to complex abiotic stress and related DNA methylation in ArabidopsisKinga Rutowicz, Marcin Puzio, Joanna Halibart-Puzio, Maciej Lirski, Magdalena A. Kroteń, Maciej Kotliński, Łukasz Kniżewski, Bartosz Lange, Anna Muszewska, Katarzyna Śniegowska-Świerk et al. · 2015 · PLANT PHYSIOLOGY
- Carbonate-sensitive phytotransferrin controls high-affinity iron uptake in diatomsJeffrey B. McQuaid, Adam B. Kustka, Miroslav Obornı́k, Aleš Horák, John P. McCrow, Bogumil Jacek Karas, Hong Zheng, Theodor Kindeberg, Andreas J. Andersson, Katherine A. Barbeau et al. · 2018 · Nature
- Strong succession in arbuscular mycorrhizal fungal communitiesCheng Da Gao, Liliam Montoya, Ling Xu, Mary A. Madera, Joy Hollingsworth, Elizabeth A. Purdom, Robert B. Hutmacher, Jeffery A. Dahlberg, Devin Coleman‐Derr, Peggy G. Lemaux et al. · 2018 · The ISME Journal
- Adaptation and coordinated evolution of plant hydraulic traitsPablo Sanchez‐Martinez, Jordi Martínez‐Vilalta, Kyle Graham Dexter, Ricardo A. Segovia, Maurizio Mencuccini · 2020 · Ecology Letters
- Desulfovibrio feeding Methanobacterium with electrons in conductive methanogenic aggregates from coastal zonesShiling Zheng, Meng Li, Yang Liu, Fanghua Liu · 2021 · Water Research
- Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted ProteinsClément Pellegrin, Emmanuelle Morin, Francis M Martin, Claire Veneault‐Fourrey · 2015 · Frontiers in Microbiology
- Consistent trade-offs in fungal trait expression across broad spatial scalesDaniel S. Maynard, Mark A. Bradford, Kristofer Covey, Daniel L. Lindner, Jessie A. Glaeser, Douglas A. Talbert, Paul Tinker, Donald M. Walker, Thomas Ward Crowther · 2019 · Nature Microbiology
- Massive Changes of Genome Size Driven by Expansions of Non-autonomous Transposable ElementsMagali Naville, Simon Henriet, Ian A. Warren, Sara Sumić, Magnus Reeve, Jean‐Nicolas Volff, Daniel Chourrout · 2019 · Current Biology
- An r package and online resource for macroevolutionary studies using the ray‐finned fish tree of lifeJonathan Chang, Daniel L. Rabosky, Stephen A. Smith, Michael E. Alfaro · 2019 · Methods in Ecology and Evolution
- Sequence capture phylogenomics of historical ethanol‐preserved museum specimens: Unlocking the rest of the vaultShahan Derkarabetian, Ligia R. Benavides, Gonzalo Giribet · 2019 · Molecular Ecology Resources
- Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake TanganyikaPatricia Q. Tran, Samantha C. Bachand, Peter B. McIntyre, Benjamin Michael Kraemer, Yvonne M. Vadeboncoeur, Ismael Aaron Kimirei, Rashid Adam Tamatamah, Katherine D. McMahon, Karthik Anantharaman · 2021 · The ISME Journal
- Recent African strains of Zika virus display higher transmissibility and fetal pathogenicity than Asian strainsFabien Aubry, Sofie Jacobs, Maïlis Darmuzey, Sébastian Lequime, Leen Delang, Albin Fontaine, Natapong Jupatanakul, Elliott F. Miot, Stéphanie Dabo, Caroline Manet et al. · 2021 · Nature Communications
- Grasses through space and time: An overview of the biogeographical and macroevolutionary history of PoaceaeTimothy J. Gallaher, Paul M. Peterson, Robert John SORENG, FERNANDO OMAR ZULOAGA, De-Zhu Li, Lynn G. Clark, Christopher Dean Tyrrell, Cassiano Aimberê Dorneles Welker, Elizabeth Anne Kellogg, Jordan K. Teisher · 2022 · Journal of Systematics and Evolution
- Accurate prediction of protein structures and interactions using a three-track neural networkBaek M, Frank DiMaio, Ivan V. Anishchenko, Justas Dauparas, Sergey Ovchinnikov, Lee GR, Wang J, Qian Cong, Lisa N. Kinch, Richard Dustin Schaeffer et al. · 2022 · Yearbook of pediatric endocrinology
- Phages overcome bacterial immunity via diverse anti-defence proteins2023
- Type III Polyketide Synthases: Functional Classification and PhylogenomicsYugo Shimizu, Hiroyuki Ogata, Susumu Goto · 2016 · ChemBioChem
- Disguised as a Sulfate Reducer: Growth of the Deltaproteobacterium Desulfurivibrio alkaliphilus by Sulfide Oxidation with NitrateCasper Thorup, Andreas Schramm, Alyssa Findlay, Kai Waldemar Finster, Lars Schreiber · 2017 · mBio
- Bacterial Communities of Diatoms Display Strong Conservation Across Strains and TimeGregory Behringer, Michael A. Ochsenkühn, Cong Fei, Jhamal Fanning, Julie A. Koester, Shady A. Amin · 2018 · Frontiers in Microbiology
- Toll-Like Receptor Evolution in Birds: Gene Duplication, Pseudogenization, and Diversifying SelectionHana Velová, Maria Weronika Gutowska-Ding, David W. Burt, Michal Vinkler · 2018 · Molecular Biology and Evolution
- De novo emergence of adaptive membrane proteins from thymine-rich genomic sequencesNikolaos Vakirlis, Omer Acar, Brian E. Hsu, Nelson Castilho Coelho, S. Branden Van Oss, Aaron C. Wacholder, Kate Medetgul-Ernar, Ray Wesley Bowman, Cameron P. Hines, John Iannotta et al. · 2020 · Nature Communications
- Easy phylotyping of Escherichia coli via the EzClermont web app and command-line toolNicholas R. Waters, Florence Abram, Fiona Brennan, Ashleigh Holmes, Leighton Pritchard · 2020 · Access Microbiology
- SARS-CoV-2 ORF6 Disrupts Bidirectional Nucleocytoplasmic Transport through Interactions with Rae1 and Nup98Amin Addetia, Nicole A. P. Lieberman, Quynh Phung, Tien-Ying Hsiang, Hong Jian Xie, Pavitra Roychoudhury, Lasata Shrestha, Michelle A. Loprieno, Meei-Li W. Huang, Michael Gale et al. · 2021 · mBio
- Phylogenomic analysis of the Candida auris- Candida haemuli clade and related taxa in the Metschnikowiaceae, and proposal of thirteen new genera, fifty-five new combinations and nine new speciesLiu, F., Hu, Z.-D., Zhao, X.-M., Zhao, W.-N., Feng, Z.-X., Yurkov, A., Alwasel, S., Boekhout, T., Bensch, K., Hui, F.-L. et al. · 2024 · Persoonia - Molecular Phylogeny and Evolution of Fungi
- TreeFam v9: a new website, more species and orthology-on-the-flyFabian Schreiber, Mateus Patrício, Matthieu Muffato, Miguel Pignatelli, Alex G. Bateman · 2013 · Nucleic Acids Research
- Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springsE. Eloe-Fadrosh, D. Páez-Espino, J. Jarett, P. Dunfield, B. Hedlund, A. Dekas, S. Grasby, A. Brady, Hai-Liang Dong, B. Briggs et al. · 2016 · Nature Communications
- Fungal Sex: The BasidiomycotaMarco A. Coelho, Guus Bakkeren, Sheng Sun, Michael E. Hood, Tatiana Giraud · 2017 · Microbiology Spectrum
- Frequency-dependent selection in vaccine-associated pneumococcal population dynamicsJukka Corander, Christophe Fraser, Michael U. Gutmann, Brian Arnold, William Paul Hanage, Stephen D. Bentley, Marc Lipsitch, Nicholas J. Croucher · 2017 · Nature Ecology & Evolution
- Pervasive population genomic consequences of genome duplication in Arabidopsis arenosaPatrick J. Monnahan, Filip Kolář, Pierre Baduel, Christian Sailer, Jordan Koch, Robert A. Horváth, Benjamin Laenen, Roswitha Schmickl, Pirita Paajanen, Gabriela Šrámková et al. · 2019 · Nature Ecology & Evolution
- Phylogenomics of Orchidaceae based on plastid and mitochondrial genomesYunxia Li, LI Zhang-hai, André Schuiteman, Mark W. Chase, Jianwu Li, Wei‐Chang Huang, Arief Hidayat, Shasha Wu, Xiaohua Jin · 2019 · Molecular Phylogenetics and Evolution
- Interferon lambda 4 impacts the genetic diversity of hepatitis C virusM. Azim Ansari, Elihú Aranday-Cortés, Camilla L. C. Ip, Ana da Silva Filipe, Siu‐Hin Lau, Connor Bamford, David Bonsall, Amy Trebes, Paolo Piazza, Vattipally B. Sreenu et al. · 2019 · eLife
- Stress-Driven Transposable Element De-repression Dynamics and Virulence Evolution in a Fungal PathogenSimone Fouché, Thomas Badet, Ursula Oggenfuss, Clémence Plissonneau, Carolina Sardinha Francisco, Daniel Croll · 2019 · Molecular Biology and Evolution
- Genome-Wide Variation in PotyvirusesDeepti Nigam, Katherine LaTourrette, Pedro Filho Noronha Souza, Hernán García-Ruíz · 2019 · Frontiers in Plant Science
- Nuclear phylogenomic analyses of asterids conflict with plastome trees and support novel relationships among major lineagesGregory W. Stull, Pamela S. Soltis, Pamela S. Soltis, Matthew A. Gitzendanner, Stephen A. Smith · 2020 · American Journal of Botany
- An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their ChoiceTanguy Lallemand, Martin Leduc, Claudine Landès, Carène Rizzon, Emmanuelle Lerat · 2020 · Genes
- The intestinal microbiota and metabolites in patients with anorexia nervosaPetra Procházková, Radka Roubalová, Jiří Dvořák, Jakub Kreisinger, Martin Hill, Helena Tlaskalová‐Hogenová, Petra Tomášová, Helena Pelantová, Martina Cermakova, Marek Kuzma et al. · 2021 · Gut Microbes
- Informative RNA base embedding for RNA structural alignment and clustering by deep representation learningManato Akiyama, Yasubumi Sakakibara · 2022 · NAR Genomics and Bioinformatics
- Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host moleculesJonathon L. Baker, James T. Morton, Márcia Dinis, Ruth Álvarez, Nini Chaichanasakul Tran, Rob D. Knight, Anna Edlund · 2020 · Genome Research
- Discovery, diversity and evolution of novel coronaviruses sampled from rodents in ChinaWen Wang, Xian-Dan Lin, Wen-Ping Guo, Runhong Zhou, Miao-Ruo Wang, Cai-Qiao Wang, Shuang Ge, Sheng-Hua Mei, Minghui Li, Mǎng Shī et al. · 2014 · Virology
- Global Analysis of WRKY Genes and Their Response to Dehydration and Salt Stress in SoybeanHui Song, Pengfei Wang, Lei Hou, Shuzhen Zhao, Chuanzhi Zhao, Han Xia, Pengcheng Li, Ye Zhang, Xiaotong Bian, Xingjun Wang · 2016 · Frontiers in Plant Science
- Next-generation freshwater bioassessment: eDNA metabarcoding with a conserved metazoan primer reveals species-rich and reservoir-specific communitiesNicholas K. M. Lim, Ywee Chieh Tay, Amrita Srivathsan, Jonathan W. T. Tan, Jeffrey T. B. Kwik, Bilgenur Baloğlu, Rudolf Meier, Darren C. J. Yeo · 2016 · Royal Society Open Science
- Sequencing of FIC1, BSEP and MDR3 in a large cohort of patients with cholestasis revealed a high number of different genetic variantsCarola Dröge, Michele Bonus, Ulrich Baumann, Caroline Klindt, Elke Lainka, Simone Kathemann, Florian Brinkert, Enke Freya Grabhorn, Eva‐Doreen Pfister, Daniel Wenning et al. · 2017 · Journal of Hepatology
- Relaxed Selection Limits Lifespan by Increasing Mutation LoadRongfeng Cui, Tania Medeiros, David Willemsen, Leonardo Nicola Martin Iasi, Glen E. Collier, Martin Graef, Martin Reichard, Dario Riccardo Valenzano · 2019 · Cell
- Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus researchFranziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex G. Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue et al. · 2020 · Briefings in Bioinformatics
- Identification of a new orthonairovirus associated with human febrile illness in ChinaJun Ma, Xiao-Long Lv, Xu Zhang, Shuzheng Han, Zedong Wang, Liang Li, Heting Sun, Lixin Ma, Zheng-Lei Cheng, Jian‐Wei Shao et al. · 2021 · Nature Medicine
- Evolution of the AKH/corazonin/ACP/GnRH receptor superfamily and their ligands in the ProtostomiaFrank Hauser, Cornelis J.P. Grimmelikhuijzen · 2014 · General and Comparative Endocrinology
- Rapid diversification associated with a macroevolutionary pulse of developmental plasticityVladislav Susoy, Erik J. Ragsdale, Natsumi Kanzaki, Ralf J. Sommer · 2015 · eLife
- Incomplete lineage sorting rather than hybridization explains the inconsistent phylogeny of the wisentKun Wang, Johannes Arjen Lenstra, Liang Liu, Quanjun Hu, Tao Ma, Qiang Qiu, Jianquan Liu · 2018 · Communications Biology
- Phylogenomics from low‐coverage whole‐genome sequencingFeng Zhang, Yinhuan Ding, Chao‐Dong Zhu, Xin Yu Zhou, Michael C. Orr, Stefan Scheu, Yun‐Xia Luan · 2019 · Methods in Ecology and Evolution
- A SNP in a Steroidogenic Enzyme Is Associated with Phenotypic Sex in Seriola FishesTakashi Koyama, Masatoshi Nakamoto, Kagayaki Morishima, Ryohei Yamashita, Takefumi Yamashita, Kohei Sasaki, Yosuke Kuruma, Naoki Mizuno, Moe Suzuki, yoshiharu okada et al. · 2019 · Current Biology
- Fungal Planet description sheets: 1112–1181Pedro Willem Crous, Don Arthur Cowan, Gillian Maggs‐Kölling, Neriman Yılmaz, Ellen Larsson, Claudio Angelini, Tor Erik Brandrud, John Dearnaley, Bálint Dima, Francesco Dovana et al. · 2020 · Persoonia - Molecular Phylogeny and Evolution of Fungi
- Gotree/Goalign: toolkit and Go API to facilitate the development of phylogenetic workflowsFrédéric Lemoine, Olivier Gascuel · 2021 · NAR Genomics and Bioinformatics
- Conversion of oxybenzone sunscreen to phototoxic glucoside conjugates by sea anemones and coralsDjordje Vuckovic, Amanda I. Tinoco, Lorraine Ling, Christian CR Renicke, John R. Pringle, William A. Mitch · 2022 · Science
- nextflu: real-time tracking of seasonal influenza virus evolution in humansRichard A. Neher, Trevor Bedford · 2015 · Bioinformatics