MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Katoh, K., Standley, D. M.·2013·Molecular Biology and Evolution

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Items 501–600 of 1,130

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    Bojk A. Berghuis, Feiqiao Brian Yu, Frederik Schulz, Paul C. Blainey, Tanja Woyke, Stephen R. Quake · 2019 · Proceedings of the National Academy of Sciences
  3. Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri
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    Elio Issa, Georgi Merhi, Balig Panossian, Tamara Salloum, Sima T. Tokajian · 2020 · mSystems
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    Dhanushka Udayanga, Lisa A. Castlebury, Amy Y. Rossman, Kevin D. Hyde · 2014 · Persoonia - Molecular Phylogeny and Evolution of Fungi
  10. The effects of soil phosphorus content on plant microbiota are driven by the plant phosphate starvation response
    Omri M. Finkel, Isai Salas-González, Gabriel Castrillo, Stijn Spaepen, Theresa F. Law, Paulo José Pereira Lima Teixeira, Corbin D. Jones, Jeffery L. Dangl · 2019 · PLoS Biology
  11. The SARS-CoV-2 Lambda variant exhibits enhanced infectivity and immune resistance
    Izumi Kimura, Yusuke Kosugi, Jiaqi Wu, Jiří Zahradník, Daichi Yamasoba, Erika P. Butlertanaka, Yuri Tanaka, Keiya Uriu, Yafei Liu, Nanami Morizako et al. · 2021 · Cell Reports
  12. IAA producing fungal endophyte Penicillium roqueforti Thom., enhances stress tolerance and nutrients uptake in wheat plants grown on heavy metal contaminated soils
    Muhammad Ikram, Niaz Ali, Gul Jan, Farzana Gul Jan, Inayat Ur Rahman, Amjad Iqbal, Muhammad Hamayun · 2018 · PLoS ONE
  13. Hiding in plain sight: New virus genomes discovered via a systematic analysis of fungal public transcriptomes
    Kerrigan B. Gilbert, Emily E. Holcomb, Robyn L. Allscheid, James C. Carrington · 2019 · PLoS ONE
  14. Omicron SARS-CoV-2 variant: Unique features and their impact on pre-existing antibodies
    Saathvik R. Kannan, Austin N. Spratt, Kalicharan Sharma, Hitendra Singh Chand, Siddappa N. Byrareddy, Kamal Deep Singh · 2021 · Journal of Autoimmunity
  15. Human symbionts inject and neutralize antibacterial toxins to persist in the gut
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  16. Global genetic diversity and geographical distribution of Bemisia tabaci and its bacterial endosymbionts
    Surapathrudu Kanakala, Murad Ghanim · 2019 · PLoS ONE
  17. Constraining uncertainty in the timescale of angiosperm evolution and the veracity of a Cretaceous Terrestrial Revolution
    Jose Barba‐Montoya, Mario dos Reis, Harald Schneider, Philip C. J. Donoghue, Ziheng Yang · 2018 · New Phytologist
  18. Genome‐based evolutionary history of Pseudomonas spp
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  19. Phylogenomics — principles, opportunities and pitfalls of big‐data phylogenetics
    Andrew Donovan Young, Jéssica P. Gillung · 2019 · Systematic Entomology
  20. FAMSA: Fast and accurate multiple sequence alignment of huge protein families
    Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Adam Gudyś · 2016 · Scientific Reports
  21. Giant lungfish genome elucidates the conquest of land by vertebrates
    Meyer, Axel, Schloissnig, Siegfried, Franchini, Paolo, Du, Kang, Woltering, Joost M., Irisarri, Iker, Wong, Wai Yee, Nowoshilow, Sergej, Kneitz, Susanne, Kawaguchi, Akane et al. · 2021 · Nature
  22. Killing tumor-associated bacteria with a liposomal antibiotic generates neoantigens that induce anti-tumor immune responses
    Menglin Wang, Benoı̂t Rousseau, Kunyu Qiu, Guannan Huang, Yu Zhang, Hang Su, Christine Le Bihan-Benjamin, Inès Khati, Oliver Artz, Michael Bonner Foote et al. · 2023 · Nature Biotechnology
  23. Chemoreceptor Evolution in Hymenoptera and Its Implications for the Evolution of Eusociality
    Xiaofan Zhou, Antonis Rokas, Shelley L. Berger, Jürgen Liebig, Anandasankar Ray, Laurence J. Zwiebel · 2015 · Genome Biology and Evolution
  24. Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution
    Shu‐Miaw Chaw, Yu-Ching Liu, Yu‐Wei Wu, Han-Yu Wang, Chan‐Yi Ivy Lin, Chung‐Shien Wu, Huei‐Mien Ke, Lo‐Yu Chang, Chih-Yao Hsu, Hui-Ting Yang et al. · 2019 · Nature Plants
  25. Proteome-wide signatures of function in highly diverged intrinsically disordered regions
    Taraneh Zarin, Bob Strome, Alex N. Nguyen Ba, Simon Alberti, Julie Deborah Forman-Kay, Alan M Moses · 2019 · eLife
  26. A Y-Encoded Suppressor of Feminization Arose via Lineage-Specific Duplication of a Cytokinin Response Regulator in Kiwifruit
    Takashi Akagi, Isabelle Marie Henry, Haruka Ohtani, Takuya Morimoto, Kenji Beppu, I. Kataoka, Ryutaro Tao · 2018 · The Plant Cell
  27. Curvature induction and membrane remodeling by FAM134B reticulon homology domain assist selective ER-phagy
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  28. An Unbiased Molecular Approach Using 3′-UTRs Resolves the Avian Family-Level Tree of Life
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  34. The divorce of Sporothrix and Ophiostoma : solution to a problematic relationship
    Z. Wilhelm de Beer, Tuan Anh Duong, Michael J. Wingfield · 2016 · Studies in Mycology
  35. Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data
    Xing‐Xing Shen, Xiaofan Zhou, Jacek Kominek, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas · 2016 · G3 Genes Genomes Genetics
  36. Filamentous phages: masters of a microbial sharing economy
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  38. A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria
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  42. ACE2 binding is an ancestral and evolvable trait of sarbecoviruses
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  44. Genetic variation across the human olfactory receptor repertoire alters odor perception
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  45. Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names
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  46. Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans
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  47. Identifying conserved genomic elements and designing universal bait sets to enrich them
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  48. The Bioinorganic Chemistry of Mammalian Metallothioneins
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  49. Comprehensive mapping of mutations to the SARS-CoV-2 receptor-binding domain that affect recognition by polyclonal human serum antibodies
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  50. RNA ‐ S eq bulked segregant analysis enables the identification of high‐resolution genetic markers for breeding in hexaploid wheat
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  51. Origin and adaptation to high altitude of Tibetan semi-wild wheat
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  52. Phylogenomics provides strong evidence for relationships of butterflies and moths
    Akito Y. Kawahara, Jesse W. Breinholt · 2014 · Proceedings of the Royal Society B Biological Sciences
  53. The Diaporthe sojae species complex: Phylogenetic re-assessment of pathogens associated with soybean, cucurbits and other field crops
    Dhanushka Udayanga, Lisa A. Castlebury, Amy Y. Rossman, Ekachai Chukeatirote, Kevin D. Hyde · 2014 · Fungal Biology
  54. Evolutionary History of Chemosensory-Related Gene Families across the Arthropoda
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  55. Insights into the Diversification and Evolution of R2R3-MYB Transcription Factors in Plants
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  56. The architecture of the SARS-CoV-2 RNA genome inside virion
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  57. The complex polyploid genome architecture of sugarcane
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  59. A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses
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  61. Widespread Fosfomycin Resistance in Gram-Negative Bacteria Attributable to the Chromosomal fosA Gene
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  63. Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning‐enabled molecular diagnostics
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  64. Physiological Functions of Bacterial “Multidrug” Efflux Pumps
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  65. Genomic legacy of the African cheetah, Acinonyx jubatus
    Dobrynin, Pavel, Liu, Shiping, Tamazian, Gaik, Xiong, Zijun, Yurchenko, Andrey A., Krasheninnikova, Ksenia, Kliver, Sergey, Schmidt-Küntzel, Anne, Koepfli, Klaus-Peter, Johnson, Warren et al. · 2015 · Genome Biology
  66. The crown-of-thorns starfish genome as a guide for biocontrol of this coral reef pest
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  67. A Robust Framework for Microbial Archaeology
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  68. A subfamily roadmap of the evolutionarily diverse glycoside hydrolase family 16 (GH16)
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  69. Type IV CRISPR–Cas systems are highly diverse and involved in competition between plasmids
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  71. Disease-associated mutations identify a novel region in human STING necessary for the control of type I interferon signaling
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  74. Phylotranscriptomics in Cucurbitaceae Reveal Multiple Whole-Genome Duplications and Key Morphological and Molecular Innovations
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  76. Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants
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  77. Evidence of recombination in coronaviruses implicating pangolin origins of nCoV-2019
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  78. Macroevolutionary dynamics in the early diversification of Asteraceae
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  82. A Reverse Ecology Approach Based on a Biological Definition of Microbial Populations
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  83. A SARS-CoV-2 vaccine candidate would likely match all currently circulating variants
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  89. Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
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