MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Katoh, K., Standley, D. M.·2013·Molecular Biology and Evolution

Cited by (1,121)

Items 301–400 of 1,121

  1. SymPortal: A novel analytical framework and platform for coral algal symbiont next‐generation sequencing ITS2 profiling
    Benjamin C. C. Hume, Edward G. Smith, Maren Ziegler, Hugh J. M. Warrington, John A. Burt, Todd C. LaJeunesse, Joerg Wiedenmann, Christian Robert Voolstra · 2019 · Molecular Ecology Resources
  2. MYB20, MYB42, MYB43, and MYB85 Regulate Phenylalanine and Lignin Biosynthesis during Secondary Cell Wall Formation
    Pan Geng, Su Zhang, Jinyue Liu, Cuihuan Zhao, Jie Wu, Yingping Cao, Chunxiang Fu, Xue Han, Hang He, Qiao Ling Zhao · 2019 · PLANT PHYSIOLOGY
  3. A review of Theileria diagnostics and epidemiology
    Ben J. Mans, Ronel Pienaar, Abdalla A. Latif · 2015 · International Journal for Parasitology Parasites and Wildlife
  4. Culturing of female bladder bacteria reveals an interconnected urogenital microbiota
    Krystal J. Thomas-White, Samuel C. Forster, Nitin Kumar, Michelle Van Kuiken, Catherine Putonti, Mark D. Stares, Evann E. Hilt, Travis K. Price, Alan J. Wolfe, Trevor D. Lawley · 2018 · Nature Communications
  5. The genus Bipolaris
    Dimuthu S. Manamgoda, Amy Y. Rossman, Lisa A. Castlebury, Pedro Willem Crous, Hugo Madrid L., Ekachai Chukeatirote, Kevin D. Hyde · 2014 · Studies in Mycology
  6. Small, Smaller, Smallest: The Origins and Evolution of Ancient Dual Symbioses in a Phloem-Feeding Insect
    Gordon M. Bennett, Nancy A. Moran · 2013 · Genome Biology and Evolution
  7. The episodic resurgence of highly pathogenic avian influenza H5 virus
    Ruopeng Xie, Kimberly M. Edwards, Michelle Wille, Xiaoman Wei, Sook‐San Wong, Mark Zanin, Rabeh El‐Shesheny, Mariette Ducatez, Leo L. M. Poon, Ghazi Kayali et al. · 2023 · Nature
  8. Interrogating Genomic-Scale Data for Squamata (Lizards, Snakes, and Amphisbaenians) Shows no Support for Key Traditional Morphological Relationships
    Frank T. Burbrink, Felipe G. Grazziotin, R. Alexander Pyron, David Cundall, Stephen C. Donnellan, Frances J. Irish, J. Scott Keogh, Fred Kraus, Robert W. Murphy, Brice Patrick Noonan et al. · 2019 · Systematic Biology
  9. Transmission dynamics and evolutionary history of 2019‐nCoV
    Xingguang Li, Wei Wang, Xiaofang Zhao, Junjie Zai, Qiang Zhao, Yi Li, Antoine Chaillon · 2020 · Journal of Medical Virology
  10. Comparative genomics reveals the dynamics of chromosome evolution in Lepidoptera
    Charlotte J Wright, Lewis Stevens, Alexander Mackintosh, Mara Lawniczak, Mark Blaxter · 2024 · Nature Ecology & Evolution
  11. A phylogenomic analysis of turtles
    Nicholas G. Crawford, James Ford Parham, Anna B. Sellas, Brant C. Faircloth, Travis C. Glenn, Theodore J. Papenfuss, James Henderson, Madison H. Hansen, Warren Brian Simison · 2014 · Molecular Phylogenetics and Evolution
  12. Identification and analysis of integrons and cassette arrays in bacterial genomes
    Jean Cury, Thomas Jové, Marie Touchon, Bertrand Néron, Eduardo P. C. Rocha · 2016 · Nucleic Acids Research
  13. No evidence for increased transmissibility from recurrent mutations in SARS-CoV-2
    Lucy van Dorp, Damien Richard, Cedric C.S. Tan, Liam P. Shaw, Mislav Acman, François Balloux · 2020 · Nature Communications
  14. Core Genome Multilocus Sequence Typing Scheme for High-Resolution Typing of Enterococcus faecium
    Mark de Been, Mette Pinholt, Janetta Top, Stefan Bletz, Alexander Mellmann, Willem van Schaik, Ellen C. Brouwer, Malbert R. C. Rogers, Yvette J. Kraat, Marc J. M. Bonten et al. · 2015 · Journal of Clinical Microbiology
  15. Initial Upper Palaeolithic Homo sapiens from Bacho Kiro Cave, Bulgaria
    Jean‐Jacques Hublin, Nikolay Sirakov, Vera Aldeias, Shara E. Bailey, Édouard Bard, Vincent Delvigne, Elena Endarova, Yoann Fagault, Helen Fewlass, Mateja Hajdinjak et al. · 2020 · Nature
  16. STRIDE: Species Tree Root Inference from Gene Duplication Events
    Emms, David M, Kelly, Steven · 2017 · Molecular Biology and Evolution
  17. Cyanobacteria and the Great Oxidation Event: evidence from genes and fossils
    Schirrmeister, Bettina E., Gugger, Muriel, Donoghue, Philip C. J. · 2015 · Palaeontology
  18. A New Israeli Tobamovirus Isolate Infects Tomato Plants Harboring Tm-22 Resistance Genes
    Neta Luria, Elisheva Smith, Victoria Reingold, Ilana Bekelman, Moshe Lapidot, Ilan Levin, Nadav Elad, Yehudit Tam, Noa Sela, Ahmad Abu-Ras et al. · 2017 · PLoS ONE
  19. Nanopore sequencing: Review of potential applications in functional genomics
    Nobuaki Kono, Kazuharu Arakawa · 2019 · Development Growth & Differentiation
  20. PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives
    Leho Tedersoo, Ave Tooming‐Klunderud, Sten Anslan · 2017 · New Phytologist
  21. Mitochondrial phylogenomics of Hemiptera reveals adaptive innovations driving the diversification of true bugs
    Hu Li, John M. Leavengood, Eric G. Chapman, Daniel Burkhardt, Fan Song, Pei Jiang, Jinpeng Liu, Xuguo Joe Zhou, Wanzhi Cai · 2017 · Proceedings of the Royal Society B Biological Sciences
  22. Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events
    Jacob E. Lemieux, Katherine J. Siddle, Bennett M. Shaw, Christine Loreth, Stephen F. Schaffner, Adrianne D. Gladden, Gordon C. Adams, Timelia Fink, Christopher H. Tomkins-Tinch, Lydia Andreyevna Krasilnikova et al. · 2020 · Science
  23. Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants
    Nicole L. Welch, Meilin Zhu, Catherine Hua, Juliane Weller, Marzieh Ezzaty Mirhashemi, Tien G. Nguyen, Sreekar Mantena, Matthew R. Bauer, Bennett M. Shaw, Cheri M. Ackerman et al. · 2022 · Nature Medicine
  24. Divergent Viruses Discovered in Arthropods and Vertebrates Revise the Evolutionary History of the Flaviviridae and Related Viruses
    Mǎng Shī, Xian-Dan Lin, Nikos Vasilakis, Jun-Hua Tian, Cixiu Li, Liang-Jun Chen, Gillian Eastwood, Xiu-Nian Diao, Ming‐Hui Chen, Xiao Chen et al. · 2015 · Journal of Virology
  25. Possible association of Firmicutes in the gut microbiota of patients with major depressive disorder
    Yichen Huang, Xing Shi, Zhiyong Li, Yang Shen, Xinxin Shi, Liying Wang, Gaofei Li, Ye Yuan, Jixiang Wang, Yongchao Zhang et al. · 2018 · Neuropsychiatric Disease and Treatment
  26. Systematic exploration of Escherichia coli phage–host interactions with the BASEL phage collection
    Enea Maffei, Aisylu Shaidullina, Marco Burkolter, Yannik Heyer, Fabienne Estermann, Valentin Druelle, Patrick Sauer, Luc Willi, Sarah Michaelis, Hubert Hilbi et al. · 2021 · PLoS Biology
  27. Phylogeny and genetic diversity of the banana Fusarium wilt pathogen Fusarium oxysporum f. sp. cubense in the Indonesian centre of origin
    Nani Maryani, L. Lombard, Yuyu Suryasari Poerba, Siti Subandiyah, Pedro Willem Crous, Gert H. J. Kema · 2018 · Studies in Mycology
  28. NODULE INCEPTION Recruits the Lateral Root Developmental Program for Symbiotic Nodule Organogenesis in Medicago truncatula
    Katharina Schiessl, Jodi L. Stewart Lilley, Tak H. Lee, Ioannis Tamvakis, Wouter Kohlen, Paul C. E. Bailey, Aaron Thomas, Jakub Lupták, Ramakrishnan Karunakaran, Matthew D. Carpenter et al. · 2019 · Current Biology
  29. Microbiology, Genomics, and Clinical Significance of the Pseudomonas fluorescens Species Complex, an Unappreciated Colonizer of Humans
    Brittan S. Scales, Robert P. Dickson, John J. LiPuma, Gary B. Huffnagle · 2014 · Clinical Microbiology Reviews
  30. A Coevolved EDS1-SAG101-NRG1 Module Mediates Cell Death Signaling by TIR-Domain Immune Receptors
    Dmitry Lapin, Viera Kováčová, Xinhua Sun, Joram A. Dongus, Deepak D. Bhandari, Patrick von Born, Jaqueline Bautor, Nina Guarneri, Jakub Rzemieniewski, Johannes Stuttmann et al. · 2019 · The Plant Cell
  31. Whitefly hijacks a plant detoxification gene that neutralizes plant toxins
    Jixing Xia, Zhaojiang Guo, Zezhong Yang, Haolin Han, Shaoli Wang, Haifeng Xu, Xin Yang, Fengshan Yang, Qingjun Wu, Wen Xie et al. · 2021 · Cell
  32. A revised family-level classification of the Polyporales (Basidiomycota)
    Alfredo Justo, Otto Miettinen, Dimitrios Floudas, Beatriz Ortiz-Santana, Elisabet Sjökvist, Daniel L. Lindner, Karen K. Nakasone, Tuomo Niemelä, Karl-Henrik Larsson, Leif Ryvarden et al. · 2017 · Fungal Biology
  33. Evolution and comparative genomics of the most common Trichoderma species
    Christian Peter Kubicek, Andrei Stecca Steindorff, Komal Chenthamara, Gelsomina Manganiello, Bernard Henrissat, Jian Zhang, Feng M. Cai, Alexey G. Kopchinskiy, Eva M. Kubicek, Alan Kuo et al. · 2019 · BMC Genomics
  34. Using Machine Learning To Predict Antimicrobial MICs and Associated Genomic Features for Nontyphoidal Salmonella
    Marcus Nguyen, Scott Wesley Long, Patrick F. McDermott, Randall J. Olsen, Robert Olson, Rick L. Stevens, Gregory H. Tyson, Shaohua Zhao, James J. Davis · 2018 · Journal of Clinical Microbiology
  35. Ctenophore relationships and their placement as the sister group to all other animals
    Whelan, Nathan V., Kocot, Kevin M., Moroz, Tatiana P., Mukherjee, Krishanu, Williams, Peter, Paulay, Gustav, Moroz, Leonid L., Halanych, Kenneth M. · 2017 · Nature Ecology & Evolution
  36. Metabolism of Toxic Sugars by Strains of the Bee Gut Symbiont Gilliamella apicola
    Hao Zheng, Alex H. Nishida, Waldan K. Kwong, Hauke Koch, Philipp Engel, Margaret I. Steele, Nancy A. Moran · 2016 · mBio
  37. Genome‐wide analysis of MIKC ‐type MADS ‐box genes in wheat: pervasive duplications, functional conservation and putative neofunctionalization
    Susanne Schilling, Alice Kennedy, Sirui Pan, Lars Sommer Jermiin, Rainer Melzer · 2019 · New Phytologist
  38. Epigenetic patterns in a complete human genome
    Gershman, Ariel, Sauria, Michael E. G., Guitart, Xavi, Vollger, Mitchell R., Hook, Paul W., Hoyt, Savannah J., Jain, Miten, Shumate, Alaina, Razaghi, Roham, Koren, Sergey et al. · 2022 · Science
  39. MitoFish and MiFish Pipeline: A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA Metabarcoding
    Yukuto Sato, Masaki U. Miya, Tsukasa Fukunaga, Tetsuya Sado, Wataru Iwasaki · 2018 · Molecular Biology and Evolution
  40. Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites
    Yong Woo, Hifzur Rahman Ansari, Thomas D. Otto, Christen M. Klinger, Martin Kolísko, Jan Michálek, Alka Saxena, Dhanasekaran Shanmugam, Annageldi Tayyrov, Alaguraj Veluchamy et al. · 2015 · eLife
  41. Programmatic access to bioinformatics tools from EMBL-EBI update: 2017
    Szymon Chojnacki, Andrew Cowley, Joon Lee, Anna Foix, Rodrigo López · 2017 · Nucleic Acids Research
  42. Hemimetabolous genomes reveal molecular basis of termite eusociality
    Mark C. Harrison, Evelien Jongepier, Hugh M. Robertson, Nicolas Arning, Tristan Bitard‐Feildel, Hsu Chao, Christopher P. Childers, Huyen Dinh, HarshaVardhan Doddapaneni, Shannon Dugan et al. · 2018 · Nature Ecology & Evolution
  43. UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis
    Jihyeon Kim, Seong-In Na, Dongwook Kim, Jongsik Chun · 2021 · The Journal of Microbiology
  44. Recruitment of CRISPR-Cas systems by Tn7-like transposons
    Joseph E. Peters, Kira S. Makarova, Sergey Shmakov, Eugene V. Koonin · 2017 · Proceedings of the National Academy of Sciences
  45. Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment
    Jeffrey G. Scott, Wesley C. Warren, Leo W. Beukeboom, Daniel Bopp, Andrew G. Clark, Sarah D. Giers, Monika Hediger, Andrew K. Jones, Shinji Kasai, Cheryl A. Leichter et al. · 2014 · Genome biology
  46. Evolution and ecology of plant viruses
    Pierre Lefeuvre, Darren Patrick Martin, Santiago F. Elena, Dionne N. Shepherd, Philippe Roumagnac, Arvind Varsani · 2019 · Nature Reviews Microbiology
  47. Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes
    S. Roux, M. Krupovic, R. Daly, Adair L. Borges, Stephen Nayfach, F. Schulz, A. Sharrar, Paula B. Matheus Carnevali, Jan-Fang Cheng, N. Ivanova et al. · 2019 · Nature Microbiology
  48. Analysis of the B cell receptor repertoire in six immune-mediated diseases
    Rachael J. M. Bashford-Rogers, Laura Bergamaschi, Eoin F. McKinney, D. C. Pombal, Federica Mescia, James Christopher Lee, David Thomas, S. M. Flint, Paul Kellam, David R.W. Jayne et al. · 2019 · Nature
  49. A Collinearity-Incorporating Homology Inference Strategy for Connecting Emerging Assemblies in the Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era
    Yongming Chen, Wanjun Song, Xiaoming Xie, Zihao Wang, Panfeng Guan, Huiru Peng, Yuannian Jiao, Zhongfu Ni, Qixin Sun, Weilong Guo · 2020 · Molecular Plant
  50. Retrospective detection of asymptomatic monkeypox virus infections among male sexual health clinic attendees in Belgium
    Irith De Baetselier, Christophe Van Dijck, Chris Richard Kenyon, Jasmine Coppens, Johan Míchiels, Tessa de Block, Hilde Smet, Sandra Coppens, Fien Vanroye, Joachim J. Bugert et al. · 2022 · Nature Medicine
  51. Agriculturally dominated landscapes reduce bee phylogenetic diversity and pollination services
    Heather L. Grab, Michael G. Branstetter, Nolan D. Amon, Katherine R. Urban‐Mead, Mia G. Park, Jason Gibbs, Eleanor J. Blitzer, Katja Poveda, Gregory M. Loeb, Bryan N. Danforth · 2019 · Science
  52. Integrated phylogenomics and fossil data illuminate the evolution of beetles
    Chenyang Cai, Erik Tihelka, Mattia Giacomelli, John Francis Lawrence, Adam Ślipiński, Robin Kundrata, Shûhei Yamamoto, Margaret K. Thayer, Alfred F. Newton, Richard A. B. Leschen et al. · 2022 · Royal Society Open Science
  53. orco Mutagenesis Causes Loss of Antennal Lobe Glomeruli and Impaired Social Behavior in Ants
    Waring Trible, Leonora Olivos-Cisneros, Sean K. McKenzie, Jonathan Saragosti, Ni‐Chen Chang, Benjamin John Matthews, Peter R. Oxley, Daniel J. C. Kronauer · 2017 · Cell
  54. Discovery and Genomic Characterization of a 382-Nucleotide Deletion in ORF7b and ORF8 during the Early Evolution of SARS-CoV-2
    Yvonne C. F. Su, Danielle E. Anderson, Barnaby Edward Young, Martin Linster, Feng Zhu, Jayanthi Jayakumar, Yan Zhuang, Shirin Kalimuddin, Jenny Guek Hong Low, Chee Wah Tan et al. · 2020 · mBio
  55. Expansion of the global RNA virome reveals diverse clades of bacteriophages
    Uri Neri, Yuri I. Wolf, Simon Roux, Antônio Pedro Camargo, Benjamin Lee, Darius Kazlauskas, I. Min Chen, Natalia Ivanova, Lisa Zeigler Allen, David Páez-Espino et al. · 2022 · Cell
  56. RNA Targeting by Functionally Orthogonal Type VI-A CRISPR-Cas Enzymes
    Alexandra East-Seletsky, Mitchell R. O’Connell, David E Burstein, Gavin J. Knott, Jennifer A. Doudna · 2017 · Molecular Cell
  57. Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics
    Janouškovec, Jan, Gavelis, Gregory S., Burki, Fabien, Dinh, Donna, Bachvaroff, Tsvetan R., Gornik, Sebastian G., Bright, Kelley J., Imanian, Behzad, Strom, Suzanne L., Delwiche, Charles F. et al. · 2017 · Proceedings of the National Academy of Sciences
  58. Fungal Planet description sheets: 785– 867
    Pedro Willem Crous, Janet Jennifer Luangsa-ard, Michael J. Wingfield, Angus J. Carnegie, Margarita Hernández‐Restrepo, L. Lombard, Jolanda Roux, Robert W. Barreto, I.G. Baseia, J. Cano et al. · 2018 · Persoonia - Molecular Phylogeny and Evolution of Fungi
  59. A chromosome-level genome of the spider Trichonephila antipodiana reveals the genetic basis of its polyphagy and evidence of an ancient whole-genome duplication event
    Zheng Fan, Yuan Tao, Piao Liu, Lu-Yu Wang, Jian-Feng Jin, Feng Zhang, Zhi‐Sheng Zhang · 2021 · GigaScience
  60. A rooted phylogeny resolves early bacterial evolution
    Coleman, Gareth A., Davín, Adrián A., Mahendrarajah, Tara A., Szánthó, Lénárd L., Spang, Anja, Hugenholtz, Philip, Szöllősi, Gergely J., Williams, Tom A. · 2021 · Science
  61. Convergent regulatory evolution and loss of flight in paleognathous birds
    Timothy B. Sackton, Phil Grayson, Alison Cloutier, Zhirui Hu, Jun S. Liu, Nicole E. Wheeler, Paul P. Gardner, Julia A. Clarke, Allan J. Baker, Michele E. Clamp et al. · 2019 · Science
  62. An ancient family of lytic polysaccharide monooxygenases with roles in arthropod development and biomass digestion
    Federico Sabbadin, Glyn R. Hemsworth, Luisa Ciano, Bernard Henrissat, Paul Dupree, Theodora Tryfona, Rita Delgado Marques, Sean T. Sweeney, Katrin Beßer, Luisa Elias et al. · 2018 · Nature Communications
  63. Phylogenomic Resolution of the Cetacean Tree of Life Using Target Sequence Capture
    Michael R. McGowen, Georgia Tsagkogeorga, Sandra Álvarez-Carretero, Mario dos Reis, Monika Struebig, Robert C. Deaville, Paul D. Jepson, Simon Jarman, Andrea Maree Polanowski, Phillip A. Morin et al. · 2019 · Systematic Biology
  64. Colletotrichum species and complexes: geographic distribution, host range and conservation status
    Pedro Talhinhas, Riccardo Baroncelli · 2021 · Fungal Diversity
  65. Improving the Yield and Nutritional Quality of Forage Crops
    Nicola M. Capstaff, Tony Miller · 2018 · Frontiers in Plant Science
  66. Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements
    Ilaria Manfredonia, Chandran Nithin, Almudena Ponce-Salvatierra, Pritha Ghosh, Tomasz K. Wirecki, Tycho Marinus, Natacha S. Ogando, Eric J. Snijder, Martijn J. van Hemert, Janusz Marek Bujnicki et al. · 2020 · Nucleic Acids Research
  67. Insights into the genus Diaporthe: phylogenetic species delimitation in the D. eres species complex
    Dhanushka Udayanga, Lisa A. Castlebury, Amy Y. Rossman, Ekachai Chukeatirote, Kevin D. Hyde · 2014 · Fungal Diversity
  68. Contribution of NAC Transcription Factors to Plant Adaptation to Land
    Bo Xu, Misato Ohtani, Masatoshi Yamaguchi, Kiminori Toyooka, Mayumi Wakazaki, Mayuko Sato, Minoru Kubo, Yoshimi Nakano, Ryosuke Sano, Yuji Hiwatashi et al. · 2014 · Science
  69. An updated tribal classification of Lamiaceae based on plastome phylogenomics
    Fei Zhao, Yaping Chen, Yasaman Salmaki, Bryan Thomas Drew, Trevor Craig Wilson, Anne‐Cathrine Scheen, Ferhat Celep, Christian Bräuchler, Mika Bendiksby, Qiang Wang et al. · 2021 · BMC Biology
  70. Phylogenetic evaluation of Geomyces and allies reveals no close relatives of Pseudogymnoascus destructans, comb. nov., in bat hibernacula of eastern North America
    Andrew M. Minnis, Daniel L. Lindner · 2013 · Fungal Biology
  71. The Egyptian Rousette Genome Reveals Unexpected Features of Bat Antiviral Immunity
    Stephanie S. Pavlovich, Sean P. Lovett, Galina Koroleva, Jonathan C. Guito, Catherine E. Arnold, Elyse R. Nagle, Kirsten A. Kulcsar, Albert Lee, Françoise Thibaud‐Nissen, Adam J. Hume et al. · 2018 · Cell
  72. Transmission networks and risk of HIV infection in KwaZulu-Natal, South Africa: a community-wide phylogenetic study
    Túlio de Oliveira, Ayesha B. M. Kharsany, Tiago Gräf, Cherie Cawood, David Khanyile, Anneke C Grobler, Adrian J. Puren, Savathree Madurai, Cheryl Baxter, Quarraisha Abdool Karim et al. · 2016 · The Lancet HIV
  73. Shotgun Mitogenomics Provides a Reference Phylogenetic Framework and Timescale for Living Xenarthrans
    Gillian C. Gibb, Fabien L. Condamine, Melanie Kuch, Jacob M. Enk, Nadia Moraes‐Barros, Mariella Superina, Hendrik N. Poinar, Frédéric Delsuc · 2015 · Molecular Biology and Evolution
  74. Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species
    Jens C. Frisvad, Sietske Grijseels, Sylvain Prigent, Boyang Ji, Jacques Dainat, Kristian Fog Nielsen, Jens C. Frisvad, Mhairi Workman, Jens Nielsen · 2017 · Nature Microbiology
  75. A neurotransmitter produced by gut bacteria modulates host sensory behaviour
    Michael P. O’Donnell, Bennett William Fox, Pin-Hao Chao, Frank C. Schroeder, Piali Sengupta · 2020 · Nature
  76. An updated classification of cyanobacterial orders and families based on phylogenomic and polyphasic analysis
    Otakar Strunecký, Anna Pavlovna Ivanova, Jan Mareš · 2022 · Journal of Phycology
  77. Exploration of Plastid Phylogenomic Conflict Yields New Insights into the Deep Relationships of Leguminosae
    Rong Zhang, Yinhuan Wang, Jian‐Jun Jin, Gregory W. Stull, Anne Bruneau, Domingos Cardoso, Luciano Paganucci de Queiroz, Michael J. Moore, Shudong Zhang, Siyun Chen et al. · 2020 · Systematic Biology
  78. Phylogenomics provides robust support for a two-domains tree of life
    Williams, Tom A., Cox, Cymon J., Foster, Peter G., Szöllősi, Gergely J., Embley, T. Martin · 2019 · Nature Ecology & Evolution
  79. Didymellaceae revisited
    Q Chen, Lingwei Hou, Weijun Duan, Pedro Willem Crous, L. Cai · 2017 · Studies in Mycology
  80. Origin and evolution of the nuclear auxin response system
    Sumanth Kumar Mutte, Hirotaka Kato, Carl J. Rothfels, Michael Melkonian, Gane Ka‐Shu Wong, Dolf Weijers · 2018 · eLife
  81. Genotype I African swine fever viruses emerged in domestic pigs in China and caused chronic infection
    Encheng Sun, Lianyu Huang, Xianfeng Zhang, Jiwen Zhang, Dongdong Shen, Zhenjiang Zhang, Zilong Wang, Hong Huo, Wenqing Wang, Haoyue Huangfu et al. · 2021 · Emerging Microbes & Infections
  82. Cryptic transmission of SARS-CoV-2 in Washington state
    Trevor Bedford, Alexander L. Greninger, Pavitra Roychoudhury, Lea M. Starita, Michael Famulare, Meei-Li W. Huang, Arun Kumar Nalla, Gregory Pepper, Adam Reinhardt, Hong Jian Xie et al. · 2020 · Science
  83. Phylogenetic classification of yeasts and related taxa within Pucciniomycotina
    Q.-M. Wang, Andrey M. Yurkov, Markus Göker, Helge Thorsten Lumbsch, Steven Don Leavitt, Marizeth Groenewald, Bart Theelen, X.-Z. Liu, Teun Boekhout, F-Y Bai · 2015 · Studies in Mycology
  84. Genomic analysis of 38 Legionella species identifies large and diverse effector repertoires
    David E Burstein, Francisco Amaro, Tal Zusman, Ziv Lifshitz, Ofir Cohen, Jack A. Gilbert, Tal Pupko, Howard A. Shuman, Gil Segal · 2016 · Nature Genetics
  85. ConSurf‐DB: An accessible repository for the evolutionary conservation patterns of the majority of PDB proteins
    Adi Ben Chorin, Gal Masrati, Amit Kessel, Aya Narunsky, Josef Sprinzak, Shlomtzion Lahav, Haim Ashkenazy, Nir Ben‐Tal · 2019 · Protein Science
  86. stratag : An r package for manipulating, summarizing and analysing population genetic data
    Frederick I. Archer, Paula E. Adams, Brita B. Schneiders · 2016 · Molecular Ecology Resources
  87. Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.l
    Diego F. Morales‐Briones, Gudrun Kadereit, Delphine T. Tefarikis, Michael J. Moore, Stephen A. Smith, Samuel F. Brockington, Alfonso Timoneda, Won Cheol Yim, John C. Cushman, Ya Jun Yang · 2020 · Systematic Biology
  88. The Penium margaritaceum Genome: Hallmarks of the Origins of Land Plants
    Chen Jiao, Iben Sørensen, Xuepeng Sun, Honghe Sun, Hila Behar, Saleh Alseekh, Glenn Philippe, Kattia Palacio‐López, Li Sun, Reagan Reed et al. · 2020 · Cell
  89. Broad sarbecovirus neutralization by a human monoclonal antibody
    M. Alejandra Tortorici, Nadine Czudnochowski, Tyler N. Starr, Roberta Marzi, Alexandra C. Walls, Fabrizia Zatta, John E. Bowen, Stefano Jaconi, Julia di Iulio, Zhaoqian Wang et al. · 2021 · Nature
  90. Surveillance of Bat Coronaviruses in Kenya Identifies Relatives of Human Coronaviruses NL63 and 229E and Their Recombination History
    Ying Tao, Mǎng Shī, Christina Chommanard, Krista J. Queen, Jing Zhang, Wanda Markotter, Ivan V. Kuzmin, Edward Charles Holmes, Suxiang Tong · 2017 · Journal of Virology
  91. Divergent SARS-CoV-2 variant emerges in white-tailed deer with deer-to-human transmission
    Bradley Pickering, Oliver Lung, Finlay Maguire, Peter Kruczkiewicz, Jonathon D. Kotwa, Tore Buchanan, Marianne Gagnier, Jennifer L. Guthrie, Claire M. Jardine, Alex Marchand‐Austin et al. · 2022 · Nature Microbiology
  92. Fungal Planet description sheets: 625–715
    Pedro Willem Crous, Michael J. Wingfield, Treena Isobel Burgess, Angus J. Carnegie, Giles E. St. J. Hardy, David Ingle Smith, Brett Anthony Summerell, J. Cano, Josep Guarro, Jos A. M. P. Houbraken et al. · 2017 · Persoonia - Molecular Phylogeny and Evolution of Fungi
  93. Reconstructing the genetic history of late Neanderthals
    Mateja Hajdinjak, Qiaomei Fu, Alexander Hübner, Martin Petr, Fabrizio Mafessoni, Steffi Grote, Pontus Skoglund, Vagheesh Narasimham, Hélène Rougier, Isabelle Crèvecoeur et al. · 2018 · Nature
  94. The Resistome of Pseudomonas aeruginosa in Relationship to Phenotypic Susceptibility
    Veronica N. Kos, Maxime Déraspe, Robert E. McLaughlin, James D. Whiteaker, Paul H. Roy, Richard A. Alm, Jacques Corbeil, Humphrey Gardner · 2014 · Antimicrobial Agents and Chemotherapy
  95. A high-quality genome assembly of quinoa provides insights into the molecular basis of salt bladder-based salinity tolerance and the exceptional nutritional value
    Changsong Zou, Aojun Chen, Lihong Xiao, Heike M. Müller, Peter Ache, Georg Haberer, Meiling Zhang, Jia Wei, Ping Deng, Ru Huang et al. · 2017 · Cell Research
  96. Plastid phylogenomic insights into relationships of all flowering plant families
    Hongtao Li, Yang Luo, Lu Gan, Pengfei Ma, Lian‐Ming Gao, Junbo Yang, Jie Cai, Matthew A. Gitzendanner, Peter W. Fritsch, Ting Zhang et al. · 2021 · BMC Biology
  97. Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales
    Kira S. Makarova, Yuri I. Wolf, Eugene K. Koonin · 2015 · Life
  98. Redefining Ceratocystis and allied genera
    Z. Wilhelm de Beer, Tuan Anh Duong, Irene Barnes, Brenda Diana Wingfield, Michael J. Wingfield · 2014 · Studies in Mycology
  99. Nitrogen and phosphorus additions impact arbuscular mycorrhizal abundance and molecular diversity in a tropical montane forest
    Tessa Camenzind, Stefan Hempel, Jürgen Homeier, Sebastian Horn, Andre Velescu, Wolfgang Wilcke, Matthias C. Rillig · 2014 · Global Change Biology
  100. Adaptation and conservation insights from the koala genome
    Rebecca N. Johnson, Denis O’Meally, Zhiliang Chen, Graham Etherington, Simon Y. W. Ho, Will J. Nash, Catherine E. Grueber, Yuanyuan Cheng, Camilla M. Whittington, Siobhan Dennison et al. · 2018 · Nature Genetics