MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Katoh, K., Standley, D. M.·2013·Molecular Biology and Evolution
Cited by (1,121)
Items 301–400 of 1,121
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- Nanopore sequencing: Review of potential applications in functional genomicsNobuaki Kono, Kazuharu Arakawa · 2019 · Development Growth & Differentiation
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- A revised family-level classification of the Polyporales (Basidiomycota)Alfredo Justo, Otto Miettinen, Dimitrios Floudas, Beatriz Ortiz-Santana, Elisabet Sjökvist, Daniel L. Lindner, Karen K. Nakasone, Tuomo Niemelä, Karl-Henrik Larsson, Leif Ryvarden et al. · 2017 · Fungal Biology
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- Genome‐wide analysis of MIKC ‐type MADS ‐box genes in wheat: pervasive duplications, functional conservation and putative neofunctionalizationSusanne Schilling, Alice Kennedy, Sirui Pan, Lars Sommer Jermiin, Rainer Melzer · 2019 · New Phytologist
- Epigenetic patterns in a complete human genomeGershman, Ariel, Sauria, Michael E. G., Guitart, Xavi, Vollger, Mitchell R., Hook, Paul W., Hoyt, Savannah J., Jain, Miten, Shumate, Alaina, Razaghi, Roham, Koren, Sergey et al. · 2022 · Science
- MitoFish and MiFish Pipeline: A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA MetabarcodingYukuto Sato, Masaki U. Miya, Tsukasa Fukunaga, Tetsuya Sado, Wataru Iwasaki · 2018 · Molecular Biology and Evolution
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- Programmatic access to bioinformatics tools from EMBL-EBI update: 2017Szymon Chojnacki, Andrew Cowley, Joon Lee, Anna Foix, Rodrigo López · 2017 · Nucleic Acids Research
- Hemimetabolous genomes reveal molecular basis of termite eusocialityMark C. Harrison, Evelien Jongepier, Hugh M. Robertson, Nicolas Arning, Tristan Bitard‐Feildel, Hsu Chao, Christopher P. Childers, Huyen Dinh, HarshaVardhan Doddapaneni, Shannon Dugan et al. · 2018 · Nature Ecology & Evolution
- UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysisJihyeon Kim, Seong-In Na, Dongwook Kim, Jongsik Chun · 2021 · The Journal of Microbiology
- Recruitment of CRISPR-Cas systems by Tn7-like transposonsJoseph E. Peters, Kira S. Makarova, Sergey Shmakov, Eugene V. Koonin · 2017 · Proceedings of the National Academy of Sciences
- Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environmentJeffrey G. Scott, Wesley C. Warren, Leo W. Beukeboom, Daniel Bopp, Andrew G. Clark, Sarah D. Giers, Monika Hediger, Andrew K. Jones, Shinji Kasai, Cheryl A. Leichter et al. · 2014 · Genome biology
- Evolution and ecology of plant virusesPierre Lefeuvre, Darren Patrick Martin, Santiago F. Elena, Dionne N. Shepherd, Philippe Roumagnac, Arvind Varsani · 2019 · Nature Reviews Microbiology
- Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomesS. Roux, M. Krupovic, R. Daly, Adair L. Borges, Stephen Nayfach, F. Schulz, A. Sharrar, Paula B. Matheus Carnevali, Jan-Fang Cheng, N. Ivanova et al. · 2019 · Nature Microbiology
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- Improving the Yield and Nutritional Quality of Forage CropsNicola M. Capstaff, Tony Miller · 2018 · Frontiers in Plant Science
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- Didymellaceae revisitedQ Chen, Lingwei Hou, Weijun Duan, Pedro Willem Crous, L. Cai · 2017 · Studies in Mycology
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- stratag : An r package for manipulating, summarizing and analysing population genetic dataFrederick I. Archer, Paula E. Adams, Brita B. Schneiders · 2016 · Molecular Ecology Resources
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- Redefining Ceratocystis and allied generaZ. Wilhelm de Beer, Tuan Anh Duong, Irene Barnes, Brenda Diana Wingfield, Michael J. Wingfield · 2014 · Studies in Mycology
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