MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

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Items 201–300 of 1,121

1. Updated unified phylogenetic classification system and revised nomenclature for Newcastle disease virus
   Kiril M. Dimitrov, Célia Abolnik, Claudio L. Afonso, Emmanuel Albina, Justin Bahl, Mikael Berg, François‐Xavier Briand, Ian Hay Brown, Kang-Seuk Choi, I. A. Chvala et al. · 2019 · Infection Genetics and Evolution
2. Phylogenomics and the rise of the angiosperms
   Alexandre Rizzo Zuntini, Tom Carruthers, Olivier Maurin, Paul C. E. Bailey, Kevin Leempoel, Grace E. Brewer, Niroshini Epitawalage, Elaine Françoso, Berta Gallego, Catherine McGinnie et al. · 2024 · Nature
3. Systematic humanization of yeast genes reveals conserved functions and genetic modularity
   Aashiq Hussain Kachroo, Jon M. Laurent, Christopher M. Yellman, Austin G. Meyer, Claus O. Wilke, Edward M. Marcotte · 2015 · Science
4. Evolutionary history, potential intermediate animal host, and cross‐species analyses of SARS‐CoV‐2
   Xingguang Li, Junjie Zai, Qiang Zhao, Qing Hua Nie, Yi Li, Brian Thomas Foley, Antoine Chaillon · 2020 · Journal of Medical Virology
5. SARS-CoV-2 ORF3b Is a Potent Interferon Antagonist Whose Activity Is Increased by a Naturally Occurring Elongation Variant
   Konno, Yoriyuki, Kimura, Izumi, Uriu, Keiya, Fukushi, Masaya, Irie, Takashi, Koyanagi, Yoshio, Sauter, Daniel, Gifford, Robert J., Nakagawa, So, Sato, Kei · 2020 · Cell Reports
6. Using evolutionary data to make sense of macromolecules with a “face‐lifted” ConSurf
   Barak Yariv, E. Yariv, Amit Kessel, G. Masrati, Adi Ben Chorin, E. Martz, I. Mayrose, T. Pupko, N. Ben-Tal · 2023 · Protein Science
7. The widespread IS200/IS605 transposon family encodes diverse programmable RNA-guided endonucleases
   Altae-Tran, Han, Kannan, Soumya, Demircioglu, F. Esra, Oshiro, Rachel, Nety, Suchita P., McKay, Luke J., Dlakić, Mensur, Inskeep, William P., Makarova, Kira S., Macrae, Rhiannon K. et al. · 2021 · Science
8. A Y-chromosome–encoded small RNA acts as a sex determinant in persimmons
   Takashi Akagi, Isabelle Marie Henry, Ryutaro Tao, Luca Comai · 2014 · Science
9. The Papillomavirus Episteme: a major update to the papillomavirus sequence database
   Koenraad Van Doorslaer, Zhiwen Li, Sandhya Xirasagar, Piet Maes, David Kaminsky, David Liou, Qiang Sun, Ramandeep Kaur, Yentram Huyen, Alison A. McBride · 2016 · Nucleic Acids Research
10. Highly pathogenic avian influenza A (H5N1) in marine mammals and seabirds in Peru
    Mariana Leguía, Alejandra Garcia-Glaessner, Breno Muñoz-Saavedra, Diana Juárez, Patricia Barrera, Carlos Calvo-Mac, Javier Jara, Walter Silva, Karl Ploog, Lady Amaro et al. · 2023 · Nature Communications
11. Dissemination of antibiotic resistance genes from antibiotic producers to pathogens
    Xinglin Jiang, Mostafa M. H. Ellabaan, Pep Charusanti, Christian Munck, Kai Blin, Yaojun Tong, Tilmann Weber, Morten Otto Alexander Sommer, Sang Yup Lee · 2017 · Nature Communications
12. Tree diversity and species identity effects on soil fungi, protists and animals are context dependent
    Leho Tedersoo, Mohammad Bahram, Tomáš Cajthaml, Sergei Põlme, Indrek Hiiesalu, Sten Anslan, Helery Harend, Franz Buegger, Karin Pritsch, Julia Koricheva et al. · 2015 · The ISME Journal
13. Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)
    David W. Waite, Inka Vanwonterghem, Christian Rinke, Donovan H. Parks, Ying Zhang, Ken Takai, Stefan M. Sievert, Jörg Simon, Barbara J. Campbell, Thomas E. Hanson et al. · 2017 · Frontiers in Microbiology
14. Deep mitochondrial origin outside the sampled alphaproteobacteria
    Martijn, Joran, Vosseberg, Julian, Guy, Lionel, Offre, Pierre, Ettema, Thijs J. G. · 2018 · Nature
15. A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions
    Wallace, R. John, Sasson, Goor, Garnsworthy, Philip C., Tapio, Ilma, Gregson, Emma, Bani, Paolo, Huhtanen, Pekka, Bayat, Ali R., Strozzi, Francesco, Biscarini, Filippo et al. · 2019 · Science Advances
16. Genomic adaptation to polyphagy and insecticides in a major East Asian noctuid pest
    Tingcai Cheng, Jiaqi Wu, Yuqian Wu, Rajendra V. E. Chilukuri, Lihua Huang, Kohji Yamamoto, Li Feng, Wanshun Li, Zhiwei Chen, Huizhen Guo et al. · 2017 · Nature Ecology & Evolution
17. Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic
    Yatish Turakhia, Bryan P. Thornlow, Angie S. Hinrichs, Nicola De Maio, Landen Gozashti, Robert Lanfear, David H. Haussler, Russell B Corbett-Detig · 2021 · Nature Genetics
18. Are pangolins the intermediate host of the 2019 novel coronavirus (SARS-CoV-2)?
    Ping Liu, Jing‐Zhe Jiang, Xiu‐Feng Wan, Yan Hua, Linmiao Li, Jiabin Zhou, Xiaohu Wang, Fanghui Hou, Jing Chen, Jiejian Zou et al. · 2020 · PLoS Pathogens
19. New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamily
    Christine B. Trame, Yuanyuan Chang, Herbert L. Axelrod, Ruth Y. Eberhardt, Penelope C. Coggill, Marco Punta, Neil David Rawlings · 2014 · BMC Bioinformatics
20. The origins and spread of domestic horses from the Western Eurasian steppes
    Pablo Librado, Naveed Khan, Antoine Fages, Mariya A. Kusliy, Tomasz Suchan, Laure Tonasso‐Calvière, Stéphanie Schiavinato, Duha Alioğlu, Aurore Fromentier, Aude Perdereau et al. · 2021 · Nature
21. Orthology Inference in Nonmodel Organisms Using Transcriptomes and Low-Coverage Genomes: Improving Accuracy and Matrix Occupancy for Phylogenomics
    Ya Jun Yang, Stephen A. Smith · 2014 · Molecular Biology and Evolution
22. Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7
    Bo Meng, Steven A. Kemp, Guido Papa, Rawlings P. Datir, Isabella A.T.M. Ferreira, Sara Marelli, William T. Harvey, Spyros Lytras, Ahmed Mohamed, Giulia Gallo et al. · 2021 · Cell Reports
23. Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution
    Gai Huang, Zhiguo Wu, Richard G. Percy, Mingzhou Bai, Yang Li, James Frelichowski, Jiang Yong Hu, Kun Wang, John Z. Yu, Yuxian Zhu · 2020 · Nature Genetics
24. Clinical and virologic characteristics of the first 12 patients with coronavirus disease 2019 (COVID-19) in the United States
    The COVID-19 Investigation Team · 2020 · Nature Medicine
25. Zika virus evolution and spread in the Americas
    Hayden C. Metsky, Christian B. Matranga, Shirlee Wohl, Stephen F. Schaffner, Catherine A. Freije, Sarah M. Winnicki, Kendra L. West, James Qu, Mary Lynn Baniecki, Adrianne D. Gladden et al. · 2017 · Nature
26. Evolution and Ecology of Actinobacteria and Their Bioenergy Applications
    Gina R. Lewin, Camila Carlos, Marc G. Chevrette, Heidi A. Horn, Bradon R. McDonald, Robert J. Stankey, Brian G. Fox, Cameron R. Currie · 2016 · Annual Review of Microbiology
27. Genomic epidemiology reveals multiple introductions of Zika virus into the United States
    Grubaugh, Nathan D., Ladner, Jason T., Kraemer, Moritz U. G., Dudas, Gytis, Tan, Amanda L., Gangavarapu, Karthik, Wiley, Michael R., White, Stephen, Thézé, Julien, Magnani, Diogo M. et al. · 2017 · Nature
28. Gut microbial diversity in women with polycystic ovary syndrome correlates with hyperandrogenism
    Torres, Pedro J, Siakowska, Martyna, Banaszewska, Beata, Pawelczyk, Leszek, Duleba, Antoni J, Kelley, Scott T, Thackray, Varykina G · 2018 · The Journal of Clinical Endocrinology & Metabolism
29. A multidimensional systems biology analysis of cellular senescence in aging and disease
    Avelar, Roberto A., Ortega, Javier Gómez, Tacutu, Robi, Tyler, Eleanor J., Bennett, Dominic, Binetti, Paolo, Budovsky, Arie, Chatsirisupachai, Kasit, Johnson, Emily, Murray, Alex et al. · 2020 · Genome Biology
30. Interpretations of Environmental Microbial Community Studies Are Biased by the Selected 16S rRNA (Gene) Amplicon Sequencing Pipeline
    Daniel Straub, Nia Blackwell, Adrián Langarica-Fuentes, Alexander Peltzer, Sven Nahnsen, Sara Kleindienst · 2020 · Frontiers in Microbiology
31. Sixteen novel lineages of SARS-CoV-2 in South Africa
    Tegally, Houriiyah, Wilkinson, Eduan, Lessells, Richard J., Giandhari, Jennifer, Pillay, Sureshnee, Msomi, Nokukhanya, Mlisana, Koleka, Bhiman, Jinal N., von Gottberg, Anne, Walaza, Sibongile et al. · 2021 · Nature Medicine
32. Programmable Inhibition and Detection of RNA Viruses Using Cas13
    Catherine A. Freije, Cameron Myhrvold, Chloe K. Boehm, Aaron E. Lin, Nicole L. Welch, Amber Carter, Hayden C. Metsky, Cynthia Y. Luo, Omar O. Abudayyeh, Jonathan S. Gootenberg et al. · 2019 · Molecular Cell
33. Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors
    Shah, Firoz, Nicolás, César, Bentzer, Johan, Ellström, Magnus, Smits, Mark, Rineau, Francois, Canbäck, Björn, Floudas, Dimitrios, Carleer, Robert, Lackner, Gerald et al. · 2016 · New Phytologist
34. Genomic characteristics and clinical effect of the emergent SARS-CoV-2 B.1.1.7 lineage in London, UK: a whole-genome sequencing and hospital-based cohort study
    Dan Frampton, Tommy Rampling, Aidan Cross, Heather Bailey, Judith Heaney, Matthew Byott, Rebecca Scott, Rebecca Sconza, Joseph Price, Marios Margaritis et al. · 2021 · The Lancet Infectious Diseases
35. From People to Panthera : Natural SARS-CoV-2 Infection in Tigers and Lions at the Bronx Zoo
    Denise McAloose, Melissa A. Laverack, Leyi Wang, Mary Lea Killian, Leonardo Cardia Caserta, Fangfeng Yuan, Patrick K. Mitchell, Krista J. Queen, Matthew R. Mauldin, Brittany D. Cronk et al. · 2020 · mBio
36. Viral Metagenomics Revealed Sendai Virus and Coronavirus Infection of Malayan Pangolins (Manis javanica)
    Ping Liu, Wu Chen, Jinping Chen · 2019 · Viruses
37. DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment
    Erik S. Wright · 2015 · BMC Bioinformatics
38. The NORAD lncRNA assembles a topoisomerase complex critical for genome stability
    Mathias Munschauer, Celina T. Nguyen, Klara Sirokman, Christina R. Hartigan, Larson J. Hogstrom, J Engreitz, Jacob C. Ulirsch, Charles P. Fulco, Vidya Subramanian, Jenny Chen et al. · 2018 · Nature
39. Biosynthetic potential of the global ocean microbiome
    Lucas Paoli, Hans‐Joachim Ruscheweyh, Clarissa C. Forneris, Florian Hubrich, Satria Ardhe Kautsar, Agneya Bhushan, Alessandro Lotti, Quentin Clayssen, Guillem Salazar, Alessio Milanese et al. · 2022 · Nature
40. Structure of Human cGAS Reveals a Conserved Family of Second-Messenger Enzymes in Innate Immunity
    Philip J. Kranzusch, Amy Si-Ying Lee, James M. Berger, Jennifer A. Doudna · 2013 · Cell Reports
41. Rapid implementation of SARS-CoV-2 sequencing to investigate cases of health-care associated COVID-19: a prospective genomic surveillance study
    Luke W. Meredith, William L Hamilton, Ben Warne, Charlotte J. Houldcroft, Myra D.T. Hosmillo, Aminu S. Jahun, Martin D. Curran, Surendra Parmar, Laura Caller, Sarah Caddy et al. · 2020 · The Lancet Infectious Diseases
42. On the origins of oxygenic photosynthesis and aerobic respiration in Cyanobacteria
    Rochelle M. Soo, James Hemp, Donovan H. Parks, Woodward W. Fischer, Philip Hugenholtz · 2017 · Science
43. Introductions and early spread of SARS-CoV-2 in the New York City area
    Ana Silvia Gonzalez-Reiche, Matthew M. Hernandez, Mitchell J. Sullivan, Brianne Ciferri, Hala Alshammary, Ajay Obla, Shelcie Fabre, Giulio Kleiner, José Polanco, Zenab Khan et al. · 2020 · Science
44. Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny
    F. Pollock, R. McMinds, Styles Smith, D. Bourne, B. Willis, Mónica Medina, R. Thurber, Jesse R. Zaneveld · 2018 · Nature Communications
45. The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts
    Oliveira, Pedro H., Touchon, Marie, Rocha, Eduardo P.C. · 2014 · Nucleic Acids Research
46. RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor
    Wang, Hao, Marcišauskas, Simonas, Sánchez, Benjamín J., Domenzain, Iván, Hermansson, Daniel, Agren, Rasmus, Nielsen, Jens, Kerkhoven, Eduard J. · 2018 · PLOS Computational Biology
47. Resolving the Phoma enigma
    Q Chen, Jiarui Jiang, G.Z. Zhang, L. Cai, Pedro Willem Crous · 2015 · Studies in Mycology
48. CATH: an expanded resource to predict protein function through structure and sequence
    Natalie L. Dawson, Tony E. Lewis, Sayoni Das, Jonathan Gill Lees, David Lee, Paul Ashford, Christine Anne Orengo, Ian Sillitoe · 2016 · Nucleic Acids Research
49. CottonFGD: an integrated functional genomics database for cotton
    Τao Zhu, Chengzhen Liang, Zhigang Meng, Guoqing Sun, Zhaoghong Meng, Sandui Guo, Rui Zhang · 2017 · BMC Plant Biology
50. Structure of paused transcription complex Pol II–DSIF–NELF
    Seychelle M. Vos, Lucas Farnung, Henning Urlaub, Patrick Cramer · 2018 · Nature
51. Emergence Shapes the Structure of the Seed Microbiota
    Matthieu Barret, Martial Briand, Sophie Bonneau, Anne Préveaux, Sophie Valière, Olivier Bouchez, Gilles Hunault, Philippe Simoneau, Marie‐Agnès Jacques · 2014 · Applied and Environmental Microbiology
52. Nanopore DNA Sequencing and Genome Assembly on the International Space Station
    Sarah L. Castro-Wallace, Charles Y. Chiu, Kristen K. John, Sarah E. Stahl, Kathleen Rubins, Alexa B. R. McIntyre, Jason P. Dworkin, Mark L. Lupisella, David J. Smith, Douglas J. Botkin et al. · 2017 · Scientific Reports
53. Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira
    Alejandro Palomo, Anders Gorm Pedersen, Jane Fowler, Arnaud Dechesne, Thomas Sicheritz‐Pontén, Barth F. Smets · 2018 · The ISME Journal
54. A genome-scale phylogeny of the kingdom Fungi
    Yuanning Li, Jacob Lucas Steenwyk, Ying Chang, Yan Wang, Timothy Yong James, Jason Stajich, Joseph W. Spatafora, Marizeth Groenewald, Casey W. Dunn, Chris Todd Hittinger et al. · 2021 · Current Biology
55. Dynamic Transcription of Distinct Classes of Endogenous Retroviral Elements Marks Specific Populations of Early Human Embryonic Cells
    Jonathan Göke, Xinyi Lu, Yun-Shen Chan, Huck‐Hui Ng, Lam-Ha Ly, Friedrich Sachs, Iwona Szczerbinska · 2015 · Cell stem cell
56. Inducing the rhizosphere microbiome by biofertilizer application to suppress banana Fusarium wilt disease
    Lin Fu, C. Ryan Penton, Yunze Ruan, Zongzhuan Shen, Chao Xue, Rong Li, Qirong Shen · 2016 · Soil Biology and Biochemistry
57. A global ocean atlas of eukaryotic genes
    Quentin Carradec, Éric Pelletier, Corinne Da Silva, Adriana Alberti, Yoann Seeleuthner, Romain Blanc‐Mathieu, Gipsi Lima‐Mendez, Fabio Rocha Jimenez Vieira, Leı̈la Tirichine, Karine Labadie et al. · 2018 · Nature Communications
58. Structural Biology and Evolution of the TGF-β Family
    Andrew P. Hinck, Thomas D. Mueller, Timothy A. Springer · 2016 · Cold Spring Harbor Perspectives in Biology
59. phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes
    Harald R. Gruber‐Vodicka, Brandon Kwee Boon Seah, Elmar Pruesse · 2020 · mSystems
60. Genome evolution and diversity of wild and cultivated potatoes
    Dié Tang, Yuxin Jia, Jinzhe Zhang, Hongbo Li, Lin Zhang Cheng, Pei Wang, Zhigui Bao, Zhihong Liu, Shuangshuang Feng, Xijian Zhu et al. · 2022 · Nature
61. Ancient proteins resolve the evolutionary history of Darwin’s South American ungulates
    Frido Welker, Matthew J. Collins, Jessica A. Thomas, Marc K. Wadsley, Selina Brace, Enrico Cappellini, Samuel T. Turvey, Marcelo Alfredo Reguero, Javier N. Gelfo, Alejandro Kramarz et al. · 2015 · Nature
62. Bacterial cGAS-like enzymes synthesize diverse nucleotide signals
    Aaron T. Whiteley, James B. Eaglesham, Carina C. de Oliveira Mann, Benjamin R. Morehouse, B. Lowey, Eric A. Nieminen, Olga Danilchanka, David King, Amy S. Y. Lee, John J. Mekalanos et al. · 2019 · Nature
63. Neutralization of SARS-CoV-2 Omicron by BNT162b2 mRNA vaccine–elicited human sera
    Muik, Alexander, Lui, Bonny Gaby, Wallisch, Ann-Kathrin, Bacher, Maren, Mühl, Julia, Reinholz, Jonas, Ozhelvaci, Orkun, Beckmann, Nina, Güimil Garcia, Ramón de la Caridad, Poran, Asaf et al. · 2022 · Science
64. Breast milk-derived human milk oligosaccharides promote Bifidobacterium interactions within a single ecosystem
    Melissa A. Lawson, Ian J. O’Neill, Magdalena Kujawska, Sree Gowrinadh Javvadi, Anisha Wijeyesekera, Zak Flegg, Lisa Chalklen, Lindsay J. Hall · 2019 · The ISME Journal
65. Learning the language of viral evolution and escape
    Hie, Brian, Zhong, Ellen D., Berger, Bonnie, Bryson, Bryan · 2021 · Science
66. NetSurfP-3.0: accurate and fast prediction of protein structural features by protein language models and deep learning
    M. H. Høie, Erik Nicolas Kiehl, Bent Petersen, Morten Nielsen, O. Winther, Henrik Nielsen, Jeppe Hallgren, P. Marcatili · 2022 · Nucleic Acids Res.
67. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome
    Pasolli, Edoardo, De Filippis, Francesca, Mauriello, Italia E., Cumbo, Fabio, Walsh, Aaron M., Leech, John, Cotter, Paul D., Segata, Nicola, Ercolini, Danilo · 2020 · Nature Communications
68. Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species
    Stephen L. Pearce, David F. Clarke, P. D. East, Samia Elfékih, Karl H. J. Gordon, Lars Sommer Jermiin, Angela McGaughran, John Graham Oakeshott, A. Papanikolaou, Omaththage P. Perera et al. · 2017 · BMC Biology
69. The Epigenomic Landscape of Prokaryotes
    Matthew J. Blow, Tyson A. Clark, Chris G. Daum, Adam M. Deutschbauer, Alexey I. Fomenkov, Roxanne A. Fries, Jeff L. Froula, Dongwan Kang, Rex R. Malmstrom, Richard Morgan et al. · 2016 · PLoS Genetics
70. Genomic and epidemiological monitoring of yellow fever virus transmission potential
    Nuno Rodrigues Faria, Moritz U. G. Kraemer, Sarah Catherine Hill, Jaqueline Góes de Jesus, Renato Santana Aguiar, Felipe Campos de Melo Iani, Joilson Xavier, Josh Quick, Louis du Plessis, Simon Dellicour et al. · 2018 · Science
71. Non‐specific amplification compromises environmental DNA metabarcoding with COI
    Rupert A. Collins, Judith Bakker, Owen Simon Wangensteen, Ana Z. Soto, Laura Corrigan, DAVID W. SIMS, Martin J. Genner, Stefano Mariani · 2019 · Methods in Ecology and Evolution
72. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
    Green, Richard E., Braun, Edward L., Armstrong, Joel, Earl, Dent, Nguyen, Ngan, Hickey, Glenn, Vandewege, Michael W., St. John, John A., Capella-Gutiérrez, Salvador, Castoe, Todd A. et al. · 2014 · Science
73. Fungal diversity notes 929–1035: taxonomic and phylogenetic contributions on genera and species of fungi
    Rungtiwa Phookamsak, Kevin D. Hyde, Rajesh Jeewon, Darbhe Jayarama Bhat, E. B. Gareth Jones, Sajeewa S. N. Maharachchikumbura, Olivier Raspé, Samantha C. Karunarathna, Dhanushka N. Wanasinghe, Sinang Hongsanan et al. · 2019 · Fungal Diversity
74. The emergence of SARS-CoV-2 in Europe and North America
    Michael Worobey, Jonathan E. Pekar, Brendan B. Larsen, Martha I. Nelson, Verity Hill, Jeffrey B. Joy, Andrew Rambaut, Marc A. Suchard, Joel O. Wertheim, Philippe Lemey · 2020 · Science
75. Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
    Qi-Yun Zhu, U. Mai, W. Pfeiffer, S. Janssen, F. Asnicar, Jon G. Sanders, P. Belda-Ferre, G. Al-Ghalith, E. Kopylova, Daniel McDonald et al. · 2019 · Nature Communications
76. Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts
    Fay‐Wei Li, Tomoaki Nishiyama, Manuel Waller, Eftychios Frangedakis, Jean Keller, Zheng Li, Noé Fernández‐Pozo, Michael S. Barker, Tom Bennett, Miguel Angel Blázquez et al. · 2020 · Nature Plants
77. Programmable RNA editing with compact CRISPR–Cas13 systems from uncultivated microbes
    Xu, Chunlong, Zhou, Yingsi, Xiao, Qingquan, He, Bingbing, Geng, Guannan, Wang, Zikang, Cao, Birong, Dong, Xue, Bai, Weiya, Wang, Yifan et al. · 2021 · Nature Methods
78. Progressive Loss of Function in a Limb Enhancer during Snake Evolution
    Evgeny Z. Kvon, Olga K. Kamneva, Uirá Souto Melo, Iros Barozzi, Marco Osterwalder, Brandon J. Mannion, Virginie Tissières, Catherine S. Pickle, Ingrid Plajzer-Frick, Elizabeth A. Lee et al. · 2016 · Cell
79. Off-season RSV epidemics in Australia after easing of COVID-19 restrictions
    Eden, John-Sebastian, Sikazwe, Chisha, Xie, Ruopeng, Deng, Yi-Mo, Sullivan, Sheena G., Michie, Alice, Levy, Avram, Cutmore, Elena, Blyth, Christopher C., Britton, Philip N. et al. · 2022 · Nature Communications
80. Endosymbiotic origin and differential loss of eukaryotic genes
    Chuan Ku, Shijulal Nelson Sathi, Mayo Roettger, Filipa L. Sousa, Peter J. Lockhart, David Bryant, Einat Hazkani‐Covo, James O. McInerney, Giddy Landan, William F. Martin · 2015 · Nature
81. A simple and effective F0 knockout method for rapid screening of behaviour and other complex phenotypes
    François Kroll, Gareth T. Powell, Marcus Ghosh, Gaia Gestri, Paride Antinucci, Timothy J. Hearn, Hande Tunbak, Sumi Lim, Harvey W Dennis, Joseph M. Fernandez et al. · 2021 · eLife
82. Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes
    Ricardo Eloy Alves, Bùi Quang Minh, Tim Urich, Arndt von Haeseler, Christa Schleper · 2018 · Nature Communications
83. Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing
    Caitlin M. Singleton, Francesca Petriglieri, Jannie Munk Kristensen, Rasmus Hansen Kirkegaard, Thomas Yssing Michaelsen, Martin Hjorth Andersen, Zivile Kondrotaite, Søren Michael Karst, Morten Simonsen Dueholm, Per Halkjær Nielsen et al. · 2021 · Nature Communications
84. Plastid phylogenomic analysis of green plants: A billion years of evolutionary history
    Matthew A. Gitzendanner, Pamela S. Soltis, Gane Ka‐Shu Wong, Brad R. Ruhfel, Pamela S. Soltis · 2018 · American Journal of Botany
85. Widespread adenine N6-methylation of active genes in fungi
    Stephen James Mondo, Richard Dannebaum, Rita C. Kuo, Katherine Louie, Adam J. Bewick, Kurt M. LaButti, Sajeet Haridas, Alan Kuo, Asaf A. Salamov, Steven R. Ahrendt et al. · 2017 · Nature Genetics
86. The structure, function and evolution of a complete human chromosome 8
    Glennis A. Logsdon, Mitchell Robert Vollger, PingHsun Hsieh, Yafei Mao, Mikhail A. Liskovykh, Sergey Koren, Sergey Nurk, Ludovica Mercuri, Philip C. Dishuck, Arang Rhie et al. · 2021 · Nature
87. Exportation of Monkeypox Virus From the African Continent
    Matthew R. Mauldin, Andrea M. McCollum, Yoshinori J. Nakazawa, Anna M. Mandra, Erin Whitehouse, Whitni Davidson, Hui Zhao, Jinxin Gao, Li Yu, Jeffrey B. Doty et al. · 2020 · The Journal of Infectious Diseases
88. A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA
    Kurt Henrik Kjær, Mikkel Winther Pedersen, Bianca De Sanctis, Binia De Cahsan, Thorfinn Sand Korneliussen, Christian Michelsen, Karina Krarup Svenninggaard Sand, Stanislav Jelavić, Anthony Ruter, Astrid M. A. Schmidt et al. · 2022 · Nature
89. The antimicrobial potential of Streptomyces from insect microbiomes
    Marc G. Chevrette, Caitlin M. Carlson, Humberto E. Ortega, Chris S. Thomas, Gene E. Ananiev, Kenneth J. Barns, Adam J. Book, Julian Cagnazzo, Camila Carlos, Will Flanigan et al. · 2019 · Nature Communications
90. STAG: Species Tree Inference from All Genes
    Emms, D.M., Kelly, S. · 2018
91. Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants
    Tomokazu Tamura, Jumpei Ito, Keiya Uriu, Jiří Zahradník, Izumi Kida, Yuki Anraku, Hesham Nasser, Maya Shofa, Yoshitaka Oda, Spyros Lytras et al. · 2023 · Nature Communications
92. Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares
    Matthew R. Jones, L. Scott Mills, Paulo C. Alves, Colin M. Callahan, Joel M. Alves, Diana J. R. Lafferty, Francis M. Jiggins, Jeffrey D. Jensen, José Melo‐Ferreira, Jeffrey Martin Good · 2018 · Science
93. A Comprehensive and Dated Phylogenomic Analysis of Butterflies
    Marianne Espeland, Jesse W. Breinholt, Keith R. Willmott, ANDREW DAVID WARREN, Roger Vila, Emmanuel F. A. Toussaint, Sarah C. Maunsell, Kwaku Aduse‐Poku, Gerard Talavera, Rod Eastwood et al. · 2018 · Current Biology
94. Lytic xylan oxidases from wood-decay fungi unlock biomass degradation.
    M. Couturier, S. Ladevèze, G. Sulzenbacher, L. Ciano, M. Fanuel, C. Moreau, A. Villares, B. Cathala, F. Chaspoul, Kristian E. H. Frandsen et al. · 2018 · Nature Chemical Biology
95. TEsorter: An accurate and fast method to classify LTR-retrotransposons in plant genomes
    Rengang Zhang, Guangyuan Li, Xiaoling Wang, Jacques Dainat, Zhao-Xuan Wang, Shujun Ou, Yongpeng Ma · 2022 · Horticulture Research
96. A molecular timescale for eukaryote evolution with implications for the origin of red algal-derived plastids
    Strassert, Jürgen F. H., Irisarri, Iker, Williams, Tom A., Burki, Fabien · 2021 · Nature Communications
97. Expanded diversity of Asgard archaea and their relationships with eukaryotes
    Yang Liu, Kira S. Makarova, Wen-Cong Huang, Yuri I. Wolf, Anastasia N. Nikolskaya, Xinxu Zhang, Mingwei Cai, Cui‐Jing Zhang, Wei Xu, Zhu-Hua Luo et al. · 2021 · Nature
98. Minimally instrumented SHERLOCK (miSHERLOCK) for CRISPR-based point-of-care diagnosis of SARS-CoV-2 and emerging variants
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99. A complete telomere-to-telomere assembly of the maize genome
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