MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Cited by (1,121)

Items 601–700 of 1,121

1. Natural product diversity associated with the nematode symbionts Photorhabdus and Xenorhabdus
   Nicholas J. Tobias, Hendrik Wolff, Bardya Djahanschiri, Florian Grundmann, Max Kronenwerth, Yi‐Ming Shi, Svenja Simonyi, Peter Grün, David I. Shapiro‐Ilan, Sacha J. Pidot et al. · 2017 · Nature Microbiology
2. Phylogenomic analysis of Apoidea sheds new light on the sister group of bees
   Manuela Sann, Oliver Niehuis, Ralph S. Peters, Christoph Mayer, Alexey M. Kozlov, Lars Podsiadłowski, Sarah Bank-Aubin, Karen Meusemann, Bernhard Y. Misof, Christoph Bleidorn et al. · 2018 · BMC Evolutionary Biology
3. Protein AMPylation by an Evolutionarily Conserved Pseudokinase
   Anju Sreelatha, Samantha S. Yee, Victor A. Lopez, Brenden C. Park, Lisa N. Kinch, Sylwia Pilch, Kelly A. Servage, Junmei Zhang, Jenny Jiou, Monika Karasiewicz-Urbańska et al. · 2018 · Cell
4. Expanding anaerobic alkane metabolism in the domain of Archaea
   Yinzhao Wang, Gunter Wegener, Jialin Hou, Fengping Wang, Xiang Xiao · 2019 · Nature Microbiology
5. The replication-competent HIV-1 latent reservoir is primarily established near the time of therapy initiation
   Abrahams, Melissa-Rose, Joseph, Sarah B., Garrett, Nigel, Tyers, Lynn, Moeser, Matthew, Archin, Nancie, Council, Olivia D., Matten, David, Zhou, Shuntai, Doolabh, Deelan et al. · 2019 · Science Translational Medicine
6. Meta-analysis reveals the effects of microbial inoculants on the biomass and diversity of soil microbial communities
   Chong Li, Xinli Chen, Zhaohui Jia, Lu Zhai, Bo Zhang, Uwe Grüters, Shilin Ma, Jing Qian, Xin Liu, Jinchi Zhang et al. · 2024 · Nature Ecology & Evolution
7. Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria
   M. Olm, Nicholas Bhattacharya, A. Crits-Christoph, B. Firek, Robyn Baker, Yun S. Song, M. Morowitz, J. Banfield · 2019 · Science Advances
8. A novel SARS-CoV-2 related coronavirus in bats from Cambodia
   Déborah Delaune, Vibol Hul, Erik A. Karlsson, Alexandre Hassanin, Tey Putita Ou, Artem Baidaliuk, Fabiana Gámbaro, Matthieu Prot, Vương Tân Tú, Sokha Chea et al. · 2021 · Nature Communications
9. Cycles of satellite and transposon evolution in Arabidopsis centromeres
   Piotr Włodzimierz, Fernando A. Rabanal, Robin Burns, Matthew Naish, Elias Primetis, Alison Dawn Scott, Terezie M. Mandáková, Nicola Gorringe, Andrew J. Tock, Daniel Holland et al. · 2023 · Nature
10. Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates
    Nan Zhang, Dongqing Yang, Dandan Wang, Youzhi Miao, Jiahui Shao, Xuan Zhou, Zhihui Xu, Qing Li, Haichao Feng, Shuqing Li et al. · 2015 · BMC Genomics
11. The Evolution of the GPCR Signaling System in Eukaryotes: Modularity, Conservation, and the Transition to Metazoan Multicellularity
    Alex de Mendoza, Arnau Sebé-Pedrós, Iñaki Ruiz‐Trillo · 2014 · Genome Biology and Evolution
12. Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013–2016 Epidemic
    William E. Diehl, Aaron E. Lin, Nathan D. Grubaugh, Luiz Max Carvalho, Kyusik Kim, Pyae Phyo Kyawe, Sean Matthew McCauley, Elisa R. Donnard, Alper Küçükural, Patrick E. McDonel et al. · 2016 · Cell
13. Flavan-3-ols Are an Effective Chemical Defense against Rust Infection
    Chhana Ullah, Sybille B. Unsicker, Christin Fellenberg, C. Peter Constabel, Axel Schmidt, Jonathan Gershenzon, Almuth Hammerbacher · 2017 · PLANT PHYSIOLOGY
14. Foreign DNA capture during CRISPR–Cas adaptive immunity
    James K. Nuñez, Lucas B. Harrington, Philip J. Kranzusch, Alan Engelman, Jennifer A. Doudna · 2015 · Nature
15. Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes
    Amit A. Upadhyay, Aaron D. Fleetwood, Ogün Adebalı, Robert D. Finn, Igor B. Zhulin · 2016 · PLoS Computational Biology
16. Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles
    Anieli Guirro Pereira, Juliana Sterli, Filipe Romero Rebello Moreira, Carlos Guerra Schrago · 2017 · Molecular Phylogenetics and Evolution
17. Discovery of several thousand highly diverse circular DNA viruses
    Michael J. Tisza, Diana V. Pastrana, Nicole L. Welch, Brittany M. Stewart, Alberto Peretti, Gabriel J. Starrett, Yuk-Ying Susana Pang, Siddharth R. Krishnamurthy, Patricia A. Pesavento, David H. McDermott et al. · 2020 · eLife
18. Distinct Polysaccharide Utilization Determines Interspecies Competition between Intestinal Prevotella spp.
    Eric J. C. Gálvez, Aida Iljazović, Lena Amend, Till Robin Lesker, Thibaud T. Renault, Sophie Thiemann, Lianxu Hao, Urmi Roy, Achim Gronow, Emmanuelle Charpentier et al. · 2020 · Cell Host & Microbe
19. African lungfish genome sheds light on the vertebrate water-to-land transition
    Wang, Kun, Wang, Jun, Zhu, Chenglong, Yang, Liandong, Ren, Yandong, Ruan, Jue, Fan, Guangyi, Hu, Jiang, Xu, Wenjie, Bi, Xupeng et al. · 2021 · Cell
20. Highly contiguous assemblies of 101 drosophilid genomes
    Bernard Y. Kim, Jeremy Wang, Danny E. Miller, Olga Y. Barmina, Emily Delaney, Ammon Thompson, Aaron A. Comeault, David Peede, Emmanuel R. R. D’Agostino, Julianne Naomi Pelaez et al. · 2021 · eLife
21. The first isolate of <i>Candida auris</i> in China: clinical and biological aspects
    Wang, Xiaojuan, Bing, Jian, Zheng, Qiushi, Zhang, Feifei, Liu, Jingbo, Yue, Huizhen, Tao, Li, Du, Han, Wang, Yina, Wang, Hui et al. · 2018 · Emerging Microbes &amp; Infections
22. Generic hyper-diversity in Stachybotriaceae
    L. Lombard, Jos A. M. P. Houbraken, Cony Decock, Robert A. Samson, Martin Meijer, Martina Réblová, J.Z. Groenewald, Pedro Willem Crous · 2016 · Persoonia - Molecular Phylogeny and Evolution of Fungi
23. Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers
    Melina Kerou, Pierre Offre, Luís Valledor, Sophie S. Abby, Michael Melcher, Matthias Nagler, Wolfram Weckwerth, Christa Schleper · 2016 · Proceedings of the National Academy of Sciences
24. A Diverse Range of Novel RNA Viruses in Geographically Distinct Honey Bee Populations
    Emily J. Remnant, Mǎng Shī, Gabriele Buchmann, T. Blacquière, Edward Charles Holmes, Madeleine Beekman, Alyson Ashe · 2017 · Journal of Virology
25. Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria
    György Sipos, Arun N. Prasanna, Mathias C. Walter, Eoin O’Connor, Balázs Bálint, Krisztina Krizsán, Brigitta Kiss, Jaqueline Hess, Torda Varga, Jason C. Slot et al. · 2017 · Nature Ecology & Evolution
26. Plastid phylogenomic insights into the evolution of Caryophyllales
    Gang Yao, Jian‐Jun Jin, Hongtao Li, Junbo Yang, Venkata Shiva Mandala, Matthew Croley, Rebecca S. Mostow, Norman Alan Douglas, Mark W. Chase, Maarten J. M. Christenhusz et al. · 2019 · Molecular Phylogenetics and Evolution
27. cGAS-like receptors sense RNA and control 3′2′-cGAMP signalling in Drosophila
    Kailey M. Slavik, Benjamin R. Morehouse, Adelyn E. Ragucci, Wen Zhou, Xianlong Ai, Yuqiang Chen, Lihua Li, Ziming Wei, Heike Bähre, Martin F. König et al. · 2021 · Nature
28. Short prokaryotic Argonaute systems trigger cell death upon detection of invading DNA
    Balwina Koopal, Ana Potocnik, Sumanth Kumar Mutte, Cristian Aparicio-Maldonado, Simon Lindhoud, Jacques J. M. Vervoort, Stan J. J. Brouns, Daan C. Swarts · 2022 · Cell
29. The genome of the jellyfish Clytia hemisphaerica and the evolution of the cnidarian life-cycle
    Lucas Leclère, Coralie Horin, Sandra Chevalier, Pascal Lapébie, Philippe Dru, Sophie Péron, Muriel Jager, Thomas Condamine, Karen Pottin, Séverine Romano et al. · 2019 · Nature Ecology & Evolution
30. Fungal Planet description sheets: 1042–1111
    Pedro Willem Crous, Michael J. Wingfield, Yit‐Heng Chooi, Cameron L. M. Gilchrist, Ernest Lacey, John I. Pitt, Francois Roets, Wijnand J. Swart, J. Cano, Nicomedes Valenzuela-López et al. · 2020 · Persoonia - Molecular Phylogeny and Evolution of Fungi
31. Glutaredoxin: Discovery, redox defense and much more
    Fernando Toshio Ogata, Vasco Branco, Filipa F. Vale, Lucia Coppo · 2021 · Redox Biology
32. Molecular phylogeny of extant Holothuroidea (Echinodermata)
    Allison K. Miller, Alexander M. Kerr, Gustav Paulay, Mike Reich, Nerida G. Wilson, Jose I. Carvajal, Greg W. Rouse · 2017 · Molecular Phylogenetics and Evolution
33. Novel soil-inhabiting clades fill gaps in the fungal tree of life
    Leho Tedersoo, Mohammad Bahram, Rasmus Puusepp, R. Henrik Nilsson, Timothy Yong James · 2017 · Microbiome
34. Easy way to learn standardization : direct and indirect methods.
    Nyi Nyi Naing · 2000 · Europe PMC (PubMed Central)
35. Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018
    Katherine J. Siddle, Philomena Eromon, Kayla G. Barnes, Samar B. Mehta, Judith Uche Oguzie, Ikponmwosa Odia, Stephen F. Schaffner, Sarah M. Winnicki, Rickey R. Shah, James Qu et al. · 2018 · New England Journal of Medicine
36. Transmission event of SARS-CoV-2 delta variant reveals multiple vaccine breakthrough infections
    Timothy Farinholt, HarshaVardhan Doddapaneni, Xiang Qin, Vipin K. Menon, Qingchang Meng, Ginger Metcalf, Hsu Chao, Marie‐Claude Gingras, Vasanthi Avadhanula, Paige Farinholt et al. · 2021 · BMC Medicine
37. Epidemiological characterisation of the first 785 SARS-CoV-2 Omicron variant cases in Denmark, December 2021
    Laura Espenhain, Tjede Funk, Maria Overvad, Sofie Marie Edslev, Jannik Fonager, Anna Cäcilia Ingham, Morten Rasmussen, Sarah Leth Madsen, Caroline Hjorth Espersen, Raphael Niklaus Sieber et al. · 2021 · Eurosurveillance
38. Strain-level characterization of broad host range mobile genetic elements transferring antibiotic resistance from the human microbiome
    Samuel C. Forster, Junyan Liu, Nitin Kumar, Emily L. Gulliver, Jodee A. Gould, Alejandra Escobar‐Zepeda, Tapoka T. Mkandawire, Lindsay J. Pike, Yan Shao, Mark D. Stares et al. · 2022 · Nature Communications
39. Global diversity and systematics of Hymenochaetaceae with poroid hymenophore
    Fang Wu, Li‐Wei Zhou, Josef Vlasák, Yu‐Cheng Dai · 2022 · Fungal Diversity
40. Lineage‐specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales
    Samuel F. Brockington, Ya Jun Yang, Fernando Gandía‐Herrero, Sarah Covshoff, Julian M. Hibberd, Rowan F. Sage, Gane Ka‐Shu Wong, Michael J. Moore, Stephen A. Smith · 2015 · New Phytologist
41. Within-host evolution of SARS-CoV-2 in an immunosuppressed COVID-19 patient as a source of immune escape variants
    Sebastian Weigang, Jonas Fuchs, Gert Zimmer, Daniel Schnepf, Lisa Kern, Julius Beer, Hendrik Luxenburger, Jakob Ankerhold, Valeria Falcone, Janine Sophie Kemming et al. · 2021 · Nature Communications
42. The tomato I‐3 gene: a novel gene for resistance to Fusarium wilt disease
    Ann‐Maree Catanzariti, Gahyun Lim, David A. Jones · 2015 · New Phytologist
43. Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism
    Polina Yu. Novikova, Nora Hohmann, Viktoria Nizhynska, Takashi Tsuchimatsu, Jamshaid Ali, Graham Muir, Alessia Guggisberg, Timothy D. Paape, Karl Schmid, Ольга Михайловна Федоренко et al. · 2016 · Nature Genetics
44. The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales
    Liming Cai, Zhenxiang Xi, Emily Moriarty Lemmon, Alan R. Lemmon, Austin Mast, Christopher Evan Buddenhagen, Liang Liu, Charles “Chuck” Davis · 2020 · Systematic Biology
45. The makers of the Protoaurignacian and implications for Neandertal extinction
    Stefano Benazzi, Viviane Slon, Sahra Talamo, Fabio Negrino, Marco Peresani, Shara E. Bailey, Susanna Sawyer, Daniele Panetta, Giuseppe Vicino, Elisabetta Starnini et al. · 2015 · Science
46. Capturing the Phylogeny of Holometabola with Mitochondrial Genome Data and Bayesian Site-Heterogeneous Mixture Models
    Fan Song, Hu Li, Pei Jiang, Xuguo Joe Zhou, Jinpeng Liu, Changhai Sun, Alfried P. Vogler, Wanzhi Cai · 2016 · Genome Biology and Evolution
47. Complete Chloroplast Genome of Nicotiana otophora and its Comparison with Related Species
    Sajjad Asaf, Abdul Latif Khan, Abdur Rahim Khan, Muhammad Waqas, ⋅Sang-Mo Kang, Muhammad Aaqil Khan, Seok-Min Lee, In‐Jung Lee · 2016 · Frontiers in Plant Science
48. Exploring the genomic diversity of black yeasts and relatives ( Chaetothyriales , Ascomycota )
    M.M. Teixeira, Leandro F. Moreno, J. Benjamin Stielow, Anna Muszewska, Matthieu Hainaut, Luiz Gonzaga, Amr Abouelleil, J.S.L. Patané, Margaret Priest, Ricardo Magela de Souza et al. · 2017 · Studies in Mycology
49. Resolving Relationships among the Megadiverse Butterflies and Moths with a Novel Pipeline for Anchored Phylogenomics
    Jesse W. Breinholt, Chandra Earl, Alan R. Lemmon, Emily Moriarty Lemmon, Lei Xiao, Akito Y. Kawahara · 2017 · Systematic Biology
50. Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen
    Lamprinos Frantzeskakis, Barbara Kracher, Stefan Kusch, Makoto Maekawa‐Yoshikawa, Saskia Bauer, Carsten Pedersen, Pietro Daniele Spanu, Takaki Maekawa, Paul Schulze‐Lefert, Ralph Panstruga · 2018 · BMC Genomics
51. Morphology and genome of a snailfish from the Mariana Trench provide insights into deep-sea adaptation
    Kun Wang, Yanjun Shen, Yongzhi Peter Yang, Xiaoni Gan, Guichun Liu, Kuang Hu, Yongxin Li, Zhaoming Gao, Li Zhu, Guoyong Yan et al. · 2019 · Nature Ecology & Evolution
52. Dynamic genome evolution in a model fern
    Daniel Blaine Marchant, Guang Jing Chen, Shengguan Cai, Fei Chen, Peter Schafran, Jerry W. Jenkins, Shengqiang Shu, Christopher Plott, Jenell Webber, John T. Lovell et al. · 2022 · Nature Plants
53. Sourcing thermotolerant poly(ethylene terephthalate) hydrolase scaffolds from natural diversity
    Erika Erickson, Japheth E. Gado, Luisana Avilán, Felicia Bratti, Richard K. Brizendine, Paul A. Cox, Raj S. Gill, Rosie Graham, Dong-Jin Kim, Gerhard König et al. · 2022 · Nature Communications
54. Identification of a new hominin bone from Denisova Cave, Siberia using collagen fingerprinting and mitochondrial DNA analysis
    Samantha Brown, Thomas Higham, Viviane Slon, Svante Pääbo, Matthias Meyer, Katerina Douka, Fiona Brock, Daniel J. Comeskey, Noemi Procopio, M.V. Shunkov et al. · 2016 · Scientific Reports
55. SAR11 bacteria linked to ocean anoxia and nitrogen loss
    Despina Tsementzi, Jieying Wu, Samuel Deutsch, Sangeeta Nath, Luis M. Rodriguez‐R, Andrew S. Burns, Piyush Ranjan, Neha Sarode, Rex R. Malmstrom, Cory C. Padilla et al. · 2016 · Nature
56. Accelerated diversification is related to life history and locomotion in a hyperdiverse lineage of microbial eukaryotes (Diatoms, Bacillariophyta)
    Teofil Nakov, Jeremy M. Beaulieu, Andrew James Alverson · 2018 · New Phytologist
57. Phylogenomic analysis sheds light on the evolutionary pathways towards acoustic communication in Orthoptera
    Hojun Song, Olivier Béthoux, Seunggwan Shin, Alexander Donath, Harald O. Letsch, Shanlin Liu, Duane D. McKenna, Guanliang Meng, Bernhard Y. Misof, Lars Podsiadłowski et al. · 2020 · Nature Communications
58. The origin of domestication genes in goats
    Zheng, Zhuqing, Wang, Xihong, Li, Ming, Li, Yunjia, Yang, Zhirui, Wang, Xiaolong, Pan, Xiangyu, Gong, Mian, Zhang, Yu, Guo, Yingwei et al. · 2020 · Science Advances
59. $1 DNA barcodes for reconstructing complex phenomes and finding rare species in specimen‐rich samples
    Rudolf Meier, Winghing Wong, Amrita Srivathsan, Maosheng Foo · 2015 · Cladistics
60. High-Resolution Metatranscriptomics Reveals the Ecological Dynamics of Mosquito-Associated RNA Viruses in Western Australia
    Mǎng Shī, Peter J. Neville, Jay Nicholson, John‐Sebastian Eden, Allison A. Imrie, Edward Charles Holmes · 2017 · Journal of Virology
61. Towards a comprehensive picture of C-to-U RNA editing sites in angiosperm mitochondria
    Alejandro Edera, Carolina L. Gandini, Maria Virginia Sanchez-Puerta · 2018 · Plant Molecular Biology
62. A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments
    Charlotte D. Vavourakis, Adrian‐Ștefan Andrei, Maliheh Mehrshad, Rohit Ghai, Dimitry Y. Sorokin, Gerard Muyzer · 2018 · Microbiome
63. A Genomotaxonomy View of the Bradyrhizobium Genus
    Ernesto Ormeño‐Orrillo, Esperanza Martínez‐Romero · 2019 · Frontiers in Microbiology
64. Comparative ACE2 variation and primate COVID-19 risk
    Amanda Dawn Melin, Mareike C. Janiak, Frank Marrone, Paramjit S. Arora, James P. Higham · 2020 · Communications Biology
65. Predicting the mutational drivers of future SARS-CoV-2 variants of concern
    M. Cyrus Maher, István Bartha, Steven Weaver, Julia di Iulio, Elena Ferri, Leah B. Soriaga, Florian A. Lempp, Brian Hie, Bryan D. Bryson, Bonnie Berger et al. · 2022 · Science Translational Medicine
66. Watermelon origin solved with molecular phylogenetics including L innaean material: another example of museomics
    Guillaume Chomicki, Susanne S. Renner · 2014 · New Phytologist
67. Genome Sequence of the Edible Cultivated Mushroom Lentinula edodes (Shiitake) Reveals Insights into Lignocellulose Degradation
    Lianfu Chen, Yuhua Gong, Yingli Cai, Wei Liu, Yan Hong Zhou, Yang Xiao, Zhangyi Xu, Liu Yin, Xiaoyu Lei, Gangzheng Wang et al. · 2016 · PLoS ONE
68. Colletotrichum species associated with anthracnose of Pyrus spp. in China
    Min Fu, Pedro Willem Crous, Qing Bai, P.F. Zhang, J. Xiang, Y. S. Guo, F.F. Zhao, Mengmeng Yang, Ní Hóng, Wenxing Xu et al. · 2018 · Persoonia - Molecular Phylogeny and Evolution of Fungi
69. Evolution of buffering in a genetic circuit controlling plant stem cell proliferation
    Daniel Rodríguez-Leal, Xu Cao, Choon‐Tak Kwon, Cara L. Soyars, Edgar Demesa-Arévalo, Jarrett Man, Lei Liu, Zachary H. Lemmon, Daniel Stedman Jones, Joyce M. Van Eck et al. · 2019 · Nature Genetics
70. In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes
    Karen Krüger, Meghan E. Chafee, Ben Francis, Tijana Glavina del Rio, Dörte Becher, Thomas Schweder, Rudolf Amann, Hanno Teeling · 2019 · The ISME Journal
71. Towards a universal barcode of oomycetes – a comparison of the cox1 and cox2 loci
    Young‐Joon Choi, Gordon W. Beakes, Sally L. Glockling, Julia Kruse, Bora Nam, Lisa Nigrelli, Sebastian Ploch, Hyeon‐Dong Shin, Roger Graham Shivas, Sabine Telle et al. · 2015 · Molecular Ecology Resources
72. Design and Characterization of a Computationally Optimized Broadly Reactive Hemagglutinin Vaccine for H1N1 Influenza Viruses
    Donald M. Carter, Christopher A. Darby, Bradford C. Lefoley, Corey J. Crevar, Timothy G. Alefantis, Raymond P. Oomen, Stephen F. Anderson, Tod Strugnell, Guadalupe Cortés-Garcia, Thorsten U. Vogel et al. · 2016 · Journal of Virology
73. The active microbial community more accurately reflects the anaerobic digestion process: 16S rRNA (gene) sequencing as a predictive tool
    Jo De Vrieze, Ameet J. Pinto, William T. Sloan, Umer Zeeshan Ijaz · 2018 · Microbiome
74. Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters
    Pablo Fresia, Verónica Antelo, Cecilia Salazar, Matías Giménez, Bruno D’Alessandro, Ebrahim Afshinnekoo, Christopher E. Mason, Gastón H. Gonnet, Gregorio Iraola · 2019 · Microbiome
75. The Expanded Universe of Prokaryotic Argonaute Proteins
    Sergei S. Ryazansky, Andrey V. Kulbachinskiy, Alexei A. Aravin · 2018 · mBio
76. Mutation of GmAITR Genes by CRISPR/Cas9 Genome Editing Results in Enhanced Salinity Stress Tolerance in Soybean
    Tianya Wang, Hongwei Xun, Wei Wang, Xiaoyang Ding, Hainan Tian, Saddam Hussain, Qianli Dong, Yingying Li, Yuxin Cheng, Chen Wang et al. · 2021 · Frontiers in Plant Science
77. High-Throughput Analysis of Human Cytomegalovirus Genome Diversity Highlights the Widespread Occurrence of Gene-Disrupting Mutations and Pervasive Recombination
    Steven Sijmons, Kim Thys, Mirabeau Mbong Ngwese, Ellen Van Damme, Jan Dvorak, Marnix Van Loock, Guangdi Li, Ruth Tachezy, Laurent Busson, Jeroen Aerssens et al. · 2015 · Journal of Virology
78. Genome-Wide Identification and Evolutionary and Expression Analyses of MYB-Related Genes in Land Plants
    Hai Du, Yan Wang, Yue Xie, Zhe Liang, Shijin Jiang, Shuairan Zhang, Y.-B. Huang, Y.-X. Tang · 2013 · DNA Research
79. Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants
    Ying Chang, Sishuo Wang, Satoshi Sekimoto, Andrea L. Aerts, Cindy Choi, Alicia Clum, Kurt M. LaButti, Erika A. Lindquist, Chew Yee Ngan, Robin A. Ohm et al. · 2015 · Genome Biology and Evolution
80. Repairing oxidized proteins in the bacterial envelope using respiratory chain electrons
    Alexandra Gennaris, Benjamin Ezraty, Camille Henry, Rym Agrebi, Alexandra Vergnes, Emmanuel Oheix, Julia Bos, Pauline Leverrier, Léon Espinosa, Joanna Szewczyk et al. · 2015 · Nature
81. Environmental DNA filtration techniques affect recovered biodiversity
    Markus Majaneva, Ola Håvard Diserud, Shannon H.C. Eagle, Erik Boström, Mehrdad Hajibabaei, Torbjørn Ekrem · 2018 · Scientific Reports
82. Human CTP synthase filament structure reveals the active enzyme conformation
    E. Lynch, Derrick R. Hicks, M. Shepherd, J. Endrizzi, Allison Maker, J. Hansen, Rachael Barry, Zemer Gitai, E. Baldwin, J. Kollman · 2017 · Nature Structural &Molecular Biology
83. Argasid and ixodid systematics: Implications for soft tick evolution and systematics, with a new argasid species list
    Ben J. Mans, Jonathan Featherston, Marija Kvas, Kerry-Anne Pillay, Daniel G. de Klerk, Ronel Pienaar, Minique H. de Castro, Tom G. Schwan, Job E. López, Pete D. Teel et al. · 2018 · Ticks and Tick-borne Diseases
84. Back to the roots: a reappraisal of Neocosmospora
    Marcelo Sandoval‐Denis, L. Lombard, Pedro Willem Crous · 2019 · Persoonia - Molecular Phylogeny and Evolution of Fungi
85. Cotton pan-genome retrieves the lost sequences and genes during domestication and selection
    Jianying Li, Daojun Yuan, Pengcheng Wang, Qiongqiong Wang, Mengling Sun, Zhenping Liu, Huan Si, Zhongping Xu, Yizan Ma, Boyang Zhang et al. · 2021 · Genome biology
86. The massive mitochondrial genome of the angiosperm Silene noctiflora is evolving by gain or loss of entire chromosomes
    Zhiqiang Wu, Jocelyn Cuthbert, DOUGLAS R. TAYLOR, Daniel B. Sloan · 2015 · Proceedings of the National Academy of Sciences
87. Rise and dissemination of aminoglycoside resistance: the aac(6′)-Ib paradigm
    María Soledad Ramirez, Nikolas Nikolaidis, Marcelo E. Tolmasky · 2013 · Frontiers in Microbiology
88. Phylodynamic analysis of porcine circovirus type 2 reveals global waves of emerging genotypes and the circulation of recombinant forms
    Giovanni Franzo, Martı́ Cortey, Joaquím Segalés, Joseph Hughes, Michele Drigo · 2016 · Molecular Phylogenetics and Evolution
89. Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum
    Baroncelli, Riccardo, Amby, Daniel Buchvaldt, Zapparata, Antonio, Sarrocco, Sabrina, Vannacci, Giovanni, Le Floch, Gaétan, Harrison, Richard J., Holub, Eric, Sukno, Serenella A., Sreenivasaprasad, Surapareddy et al. · 2016 · BMC Genomics
90. Systematic identification and characterization of regulatory elements derived from human endogenous retroviruses
    Jumpei Ito, Ryota Sugimoto, Hirofumi Nakaoka, Shiro YAMADA, Tetsuaki Kimura, Takahide Hayano, Ituro Inoue · 2017 · PLoS Genetics
91. Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)
    Diego F. Morales‐Briones, Aaron Liston, David C. Tank · 2018 · New Phytologist
92. A high-quality Actinidia chinensis (kiwifruit) genome
    Haolin Wu, Tao Ma, Minghui Kang, Fandi Ai, Junlin Zhang, Guanyong Dong, Jianquan Liu · 2019 · Horticulture Research
93. Diversity and phylogeny of basidiomycetous yeasts from plant leaves and soil: Proposal of two new orders, three new families, eight new genera and one hundred and seven new species
    A.-H. Li, F.-X. Yuan, Marizeth Groenewald, Konstanze Bensch, Andrey M. Yurkov, K. Li, P.-J. Han, Liang‐Chen Guo, M. Catherine Aime, José Paulo Sampaio et al. · 2020 · Studies in Mycology
94. Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms
    Gregory W. Stull, Xiao‐Jian Qu, Caroline Parins‐Fukuchi, Yingying Yang, Junbo Yang, Zhi-Yun Yang, Yi Hu, Hong Mā, Pamela S. Soltis, Douglas E. Soltis et al. · 2021 · Nature Plants
95. Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents.
    Meier, Dimitri V, Pjevac, Petra, Bach, Wolfgang, Hourdez, Stephane, Girguis, Peter R, Vidoudez, Charles, Amann, Rudolf, Meyerdierks, Anke · 2017 · The ISME Journal
96. Molecular Diagnosis of Pathogenic Sporothrix Species
    Anderson Messias Rodrigues, Sybren de Hoog, Zoilo Pires dè Camargo · 2015 · PLoS neglected tropical diseases
97. Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria
    Elizabeth Ficko‐Blean, Aurélie Préchoux, François Thomas, Tatiana Rochat, Robert Larocque, Yongtao Zhu, Mark R. Stam, Sabine M. Genicot, Murielle Jam, Alexandra Calteau et al. · 2017 · Nature Communications
98. A key metabolic gene for recurrent freshwater colonization and radiation in fishes
    Asano Ishikawa, Naoki Kabeya, Koki Ikeya, Ryo Kakioka, Jennifer N. Cech, Naoki Osada, Miguel Costa Leal, Jun G. Inoue, Manabu Kume, Atsushi Toyoda et al. · 2019 · Science
99. Evolution of lacewings and allied orders using anchored phylogenomics ( N europtera, M egaloptera, R aphidioptera)
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