Inter-strand photoproducts are produced in high yield within A-DNA exposed to UVC radiation
Open accessAbstract
Far-UV irradiation of DNA leads to the dimerization of pyrimidine bases, resulting in the formation of cyclobutane type dimers and (6-4) photoproducts. In the dry state, an additional thymine dimeric photolesion, the spore photoproduct, is also generated. While most photoproducts are expected to be produced between adjacent pyrimidines, little attention has been paid to lesions involving bases located on different DNA strands. Using HPLC- mass spectrometry analysis of enzymatically digested DNA, we observed that, in the dry state, inter-strand dimeric photoproducts represented 30% of the total yield of dimeric thymine lesions. The major inter-strand damage was found to be the spore photoproduct. Formation of inter-strand lesions in significant yield could be obtained in solution upon modification of the DNA conformation as the result of the addition of large amounts of ethanol. In both cases, DNA is in the A-form, which is characterized by a high compaction, likely to favor inter-strand photoreactions. Since the latter DNA conformation is also predominant in bacterial spores, the formation and repair of dimeric photoproducts involving thymine bases located on different DNA strands may thus be relevant in terms of deleterious effects of UV radiation to the latter microorganisms.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Biologically relevant CPDs involve adjacent bases.
“Although interstrand photoproducts can be obtained under very specific conditions within isolated DNA (46), the biologically relevant CPDs involve adjacent bases.”
From Photoinduced Damage to Cellular DNA: Direct and Photosensitized Reactions<sup>†</sup> (2012) · cites this paper as [46]
The yield of UVA-induced CPDs is larger than that of oxidatively generated lesions such as 8-oxoGua.
“As a striking information, the yield of CPDs was found to be larger than that of oxidatively generated lesions such as 8-oxoGua (32,46,61,88) that were long thought to be the hallmark of UVA genotoxicity, as further discussed below.”
From Photoinduced Damage to Cellular DNA: Direct and Photosensitized Reactions<sup>†</sup> (2012) · cites this paper as [46]
Neither 6-4PPs nor Dewar valence isomers have been observed by specific chromatographic techniques after UVA exposure, even at high doses.
“Although tiny amounts of 6-4PPs have been detected by immunological assays (55), neither the formation of this class of damage nor of DEWs has been observed using more specific chromatographic techniques, even at high doses of UVA (46,61,88).”
From Photoinduced Damage to Cellular DNA: Direct and Photosensitized Reactions<sup>†</sup> (2012) · cites this paper as [46]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Structure and function of DNA photolyase
Sancar, A. (1994) · Biochemistry · doi:10.1021/bi00167a001 · Cited by 663 · see citing works
Repair of DNA interstrand cross-links
Dronkert, M. L. G., & Kanaar, R. (2001) · Mutation Research/DNA Repair · doi:10.1016/s0921-8777(01)00092-1 · Cited by 557 · see citing works
Mori, T., Nakane, M., Hattori, T., Matsunaga, T., Ihara, M., & Nikaido, O. (1991) · Photochemistry and Photobiology · doi:10.1111/j.1751-1097.1991.tb02010.x · Cited by 410 · see citing works
Douki, T., & Cadet, J. (2001) · Biochemistry · doi:10.1021/bi0022543 · Cited by 337 · see citing works
Self-citationFrelon, S., Douki, T., Ravanat, J.-L., Pouget, J.-P., Tornabene, C., & Cadet, J. (2000) · Chemical Research in Toxicology · doi:10.1021/tx000085h · Cited by 271 · see citing works
Self-citationSancar, A., & Tang, M. (1993) · Photochemistry and Photobiology · doi:10.1111/j.1751-1097.1993.tb09233.x · Cited by 256 · see citing works
Thymine Photoproducts but not Thymine Dimers Found in Ultraviolet-Irradiated Bacterial Spores
Donnellan, J. E., & Setlow, R. B. (1965) · Science · doi:10.1126/science.149.3681.308 · Cited by 249 · see citing works
Douki, T., Court, M., Sauvaigo, S., Odin, F., & Cadet, J. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.16.11678 · Cited by 239 · see citing works
Self-citationResistance of spores of Bacillus species to ultraviolet light
Setlow, P. (2001) · Environmental and Molecular Mutagenesis · doi:10.1002/em.1058 · Cited by 197 · see citing works
5-Thyminyl-5,6-dihydrothymine from DNA irradiated with ultraviolet light
Varghese, A. J. (1970) · Biochemical and Biophysical Research Communications · doi:10.1016/0006-291x(70)90739-4 · Cited by 156 · see citing works
The origin of the A to B transition in DNA fibers and films
Lindsay, S. M., Lee, S. A., Powell, J. W., Weidlich, T., Demarco, C., Lewen, G. D., Tao, N. J., & Rupprecht, A. (1988) · Biopolymers · doi:10.1002/bip.360270610 · Cited by 149 · see citing works
Conformation of deoxyribonucleic acid in alcohol solutions
Girod, J. C., Johnson, W. C., Huntington, S. K., et al. (1973) · Biochemistry · doi:10.1021/bi00749a011 · Cited by 144 · see citing works
Mohr, S. C., Nv, S., He, C. M., & Setlow, P. (1991) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.88.1.77 · Cited by 136 · see citing works
Smith, C. A., & Taylor, J. (1993) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)82103-2 · Cited by 123 · see citing works
Cheek, J., & Broderick, J. B. (2002) · Journal of the American Chemical Society · doi:10.1021/ja017784g · Cited by 123 · see citing works
Lindberg, C., & Horneck, G. (1991) · Journal of Photochemistry and Photobiology B Biology · doi:10.1016/1011-1344(91)80269-n · Cited by 111 · see citing works
The A-B conformational change in the sodium salt of DNA
Cooper, P. J., & HAMILTON, L. D. G. (1966) · Journal of Molecular Biology · doi:10.1016/s0022-2836(66)80193-6 · Cited by 109 · see citing works
Doetsch, P. W., Chan, G. L., & Haseltine, W. A. (1985) · Nucleic Acids Research · doi:10.1093/nar/13.9.3285 · Cited by 105 · see citing works
Nicholson, W. L., Setlow, B., & Setlow, P. (1991) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.88.19.8288 · Cited by 103 · see citing works
Munakata, N., & Rupert, C. S. (1972) · Journal of Bacteriology · doi:10.1128/jb.111.1.192-198.1972 · Cited by 102 · see citing works
UV Laser Photolysis of DNA: Effect of Duplex Stability on Charge-Transfer Efficiency
Douki, T., Angelov, D., & Cadet, J. (2001) · Journal of the American Chemical Society · doi:10.1021/ja016426a · Cited by 100 · see citing works
Self-citationTodd, P. A., & Glickman, B. W. (1982) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.79.13.4123 · Cited by 97 · see citing works
Rebeil, R., & Nicholson, W. L. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.161278998 · Cited by 94 · see citing works
UV-Irradiated DNA Matrixes Selectively Bind Endocrine Disruptors with a Planar Structure
YAMADA, M., Kato, K., Nomizu, M., et al. (2002) · Environmental Science & Technology · doi:10.1021/es011008r · Cited by 93 · see citing works
ULTRAVIOLET PHOTOCHEMISTRY OF THYMINE IN AQUEOUS SOLUTION
Fisher, G. J., & Johns, H. E. (1970) · Photochemistry and Photobiology · doi:10.1111/j.1751-1097.1970.tb06015.x · Cited by 83 · see citing works
Horneck, G. (1995) · Planetary and Space Science · doi:10.1016/0032-0633(94)00190-3 · Cited by 78 · see citing works
Douki, T., Court, M., & Cadet, J. (2000) · Journal of Photochemistry and Photobiology B Biology · doi:10.1016/s1011-1344(00)00009-9 · Cited by 75 · see citing works
Self-citationFajardo-Cavazos, P., Salazar, C. E., & Nicholson, W. L. (1993) · Journal of Bacteriology · doi:10.1128/jb.175.6.1735-1744.1993 · Cited by 74 · see citing works
Detection of DNA adducts at the DNA sequence level by ligation-mediated PCR
Pfeifer, G. P., Drouin, R., & Holmquist, G. P. (1993) · Mutation research. Fundamental and molecular mechanisms of mutagenesis · doi:10.1016/0027-5107(93)90206-u · Cited by 74 · see citing works
Takao, M., Yonemasu, R., Yamamoto, K., & Yasui, A. (1996) · Nucleic Acids Research · doi:10.1093/nar/24.7.1267 · Cited by 72 · see citing works
Influence of relative humidity on the photochemistry of DNA films
Rahn, R. O., & Hosszu, J. L. (1969) · Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis · doi:10.1016/0005-2787(69)90161-0 · Cited by 71 · see citing works
Niggli, H. J., & Cerutti, P. (1983) · Biochemistry · doi:10.1021/bi00275a011 · Cited by 69 · see citing works
INDEPENDENCE OF PHOTOPRODUCT FORMATION ON DNA CONFORMATION*
Patrick, M. H., & Gray, D. M. (1976) · Photochemistry and Photobiology · doi:10.1111/j.1751-1097.1976.tb06867.x · Cited by 68 · see citing works
Matsunaga, T., HATAKEYAMA, Y., Ohta, M., Mori, T., & Nikaido, O. (1993) · Photochemistry and Photobiology · doi:10.1111/j.1751-1097.1993.tb02952.x · Cited by 65 · see citing works
Douki, T., & Cadet, J. (2003) · Photochemical & Photobiological Sciences · doi:10.1039/b300173c · Cited by 61 · see citing works
Self-citationMitchell, D. L. (1988) · Mutation Research/DNA Repair Reports · doi:10.1016/0167-8817(88)90024-7 · Cited by 60 · see citing works
Cadet, J., Gentner, N. E., Rózga, B., & Paterson, M. C. (1983) · Journal of Chromatography A · doi:10.1016/s0021-9673(00)91543-7 · Cited by 59 · see citing works
Mechanistic Studies on the Repair of a Novel DNA Photolesion: The Spore Photoproduct
Mehl, R. A., & Begley, T. P. (1999) · Organic Letters · doi:10.1021/ol9908676 · Cited by 56 · see citing works
Survival of microorganisms in space: A review
Horneck, G. (1981) · Advances in Space Research · doi:10.1016/0273-1177(81)90241-6 · Cited by 54 · see citing works
Effect of crosslinking on the secondary structure of DNA. I. Crosslinking by photodimerization
Herbeck, R., Yu, T., & Peticolas, W. L. (1976) · Biochemistry · doi:10.1021/bi00657a027 · Cited by 53 · see citing works
Liuzzi, M., Weinfeld, M., & Paterson, M. C. (1989) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)83356-7 · Cited by 52 · see citing works
Photochemistry of thymidine in ice
Varghese, A. J. (1970) · Biochemistry · doi:10.1021/bi00826a023 · Cited by 50 · see citing works
PHOTOCHEMICAL STUDIES OF THYMINE IN ICE*
Rahn, R. O., & Hosszu, J. L. (1969) · Photochemistry and Photobiology · doi:10.1111/j.1751-1097.1969.tb07230.x · Cited by 44 · see citing works
Far‐UV‐lnduced Dimeric Photoproducts in Short Oligonucleotides: Sequence Effects
Douki, T., Zalizniak, T., & Cadet, J. (1997) · Photochemistry and Photobiology · doi:10.1111/j.1751-1097.1997.tb08639.x · Cited by 43 · see citing works
Self-citationKan, L. S., Voituriez, L., & Cadet, J. (1992) · Journal of Photochemistry and Photobiology B Biology · doi:10.1016/1011-1344(92)85040-2 · Cited by 39 · see citing works
Synthesis and Characterization of Phthalocyanines with Direct Si−Si Linkages
Kobayashi, N., Furuya, F., Yug, G.-C., Wakita, H., Yokomizo, M., & Ishikawa, N. (2002) · Chemistry - A European Journal · doi:10.1002/1521-3765(20020315)8:6 · Cited by 39 · see citing works
USE OF SYNTHETIC POLYNUCLEOTIDES TO CHARACTERISE AN ANTISERUM MADE AGAINST UV‐IRRADIATED DNA
Mitchell, D. L., & Clarkson, J. M. (1984) · Photochemistry and Photobiology · doi:10.1111/j.1751-1097.1984.tb04646.x · Cited by 38 · see citing works
Wang, Y., Taylor, J., & Gross, M. L. (1999) · Chemical Research in Toxicology · doi:10.1021/tx9900831 · Cited by 37 · see citing works
Wang, T. V., & Rupert, C. S. (1977) · Photochemistry and Photobiology · doi:10.1111/j.1751-1097.1977.tb07432.x · Cited by 37 · see citing works
Ultraviolet-induced dimerization of non-adjacent pyrimidines
Nguyen, H. T., & Minton, K. W. (1988) · Journal of Molecular Biology · doi:10.1016/0022-2836(88)90480-9 · Cited by 34 · see citing works
Sage, É., Cramb, E., & Glickman, B. W. (1992) · Mutation research. Fundamental and molecular mechanisms of mutagenesis · doi:10.1016/0027-5107(92)90211-j · Cited by 28 · see citing works
Formation of a thymine photoproduct in transforming DNA by near ultraviolet irradiation
Cabrera-Juárez, E., & Setlow, J. K. (1977) · Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis · doi:10.1016/0005-2787(77)90022-3 · Cited by 25 · see citing works
Douki, T., Vadesne-Bauer, G., & Cadet, J. (2002) · Photochemical & Photobiological Sciences · doi:10.1039/b201612e · Cited by 22 · see citing works
Self-citationWang, Y., Gross, M. L., & Taylor, J. (2001) · Biochemistry · doi:10.1021/bi0111552 · Cited by 22 · see citing works
Sun, Y., Palasingam, K., & Nicholson, W. L. (1994) · Analytical Biochemistry · doi:10.1006/abio.1994.1379 · Cited by 14 · see citing works
Lingbeck, J. M., & Taylor, J. (1999) · Biochemistry · doi:10.1021/bi991035i · Cited by 13 · see citing works
Extensive photodimerization of non-adjacent pyrimidines
Hồng, N. T., & Minton, K. W. (1989) · Journal of Molecular Biology · doi:10.1016/0022-2836(89)90114-9 · Cited by 13 · see citing works
Wang, Y., Rempel, D. L., Taylor, J., et al. (2000) · Analytical Chemistry · doi:10.1021/ac000821m · Cited by 7 · see citing works
Flagged first, then by citations
Research works printed but not linked: 6
- [1]Cadet J. and Vigny,P. (1990) Photochemistry of nucleic acids. In Morrison,H. (ed.), Bioorganic Photochemistry. Wiley, New York, NY, Vol. 1, pp. 1–272.
- [2]Douki T. and Cadet,J. (1995) UV and nucleic acids. In Jornvall,H. and Jollès,P. (eds), Interface between Chemistry and Biochemistry. Birkhauser Verlag, Basel, Switzerland, pp. 173–197.
- [8]Douki T., Court,M., Sauvaigo,S., Odin,F. and Cadet,J. (2000) Formation of the main UV-induced thymine dimeric lesions within isolated and cellular DNA as measured by HPLC-MS/MS. J. Biol. Chem., 275, 11678–11685. [DOI] [PubMed] [Google Scholar]
- [14]Yamada M., Kato,K., Nomizu,M., Sakairi,N., Ohkawa,K., Yamamoto,H. and Nishi,N. (2002) Preparation and characterization of DNA film induced by UV irradiation. Chem. Eur. J., 8, 1407–1412. [DOI] [PubMed] [Google Scholar]
- [15]Yamada M., Kato,K., Nomizu,M. and Haruki,M. (2002) UV-irradiated DNA matrix selectively accumulates heavy metal ions. Bull. Chem. Soc. Jpn, 75, 1627–1632. [Google Scholar]
- [27]Ravanat J.-L., Douki,T., Incardona,M.-F. and Cadet,J. (1993) HPLC separations of normal and modified nucleobases and nucleosides on an amino silica gel column. J. Liquid Chromatogr., 16, 3185–3202. [Google Scholar]
Cited by
Sorted by citations
Ultraviolet radiation-mediated damage to cellular DNA
Cadet, J., Sage, E., & Douki, T. (2005) · Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis · doi:10.1016/j.mrfmmm.2004.09.012 · Cited by 932 · see citing works
Self-citationBase stacking controls excited-state dynamics in A·T DNA
Crespo-Hernández, C. E., Cohen, B., & Kohler, B. (2005) · Nature · doi:10.1038/nature03933 · Cited by 461 · see citing works
Photoinduced Damage to Cellular DNA: Direct and Photosensitized Reactions<sup>†</sup>
Cadet, J., Mouret, S., Ravanat, J., & Douki, T. (2012) · Photochemistry and Photobiology · doi:10.1111/j.1751-1097.2012.01200.x · Cited by 300 · see citing works
Self-citationActions of ultraviolet light on cellular structures
Pattison, D. I., & Davies, M. J. (2006) · Experientia Supplementum · doi:10.1007/3-7643-7378-4_6 · Cited by 283 · see citing works
Douki, T. (2013) · Photochemical & Photobiological Sciences · doi:10.1039/c3pp25451h · Cited by 132 · see citing works
Self-citationSu, D. G. T., Fang, H., Gross, M. L., & Taylor, J.-S. A. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0902386106 · Cited by 55 · see citing works
Discovery and Synthesis of New UV-Induced Intrastrand C(4−8)G and G(8−4)C Photolesions
Münzel, M., Szeibert, C., Glas, A. F., Globisch, D., & Carell, T. (2011) · Journal of the American Chemical Society · doi:10.1021/ja111304f · Cited by 28 · see citing works
Su, D. G. T., Taylor, J.-S. A., & Gross, M. L. (2010) · Chemical Research in Toxicology · doi:10.1021/tx9003962 · Cited by 26 · see citing works
Douki, T., Setlow, B., & Setlow, P. (2005) · Photochemistry and Photobiology · doi:10.1111/j.1751-1097.2005.tb01536.x · Cited by 12 · see citing works
Self-citation
- Authors
- Douki, T.
- Affiliations
- Commissariat à l'Énergie Atomique et aux Énergies Alternatives (FR)
- Corresponding author
- Douki, T.
- ORCID
- Douki, T.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2003-06-15
- Volume
- 31
- Issue
- 12
- Pages
- 3134-3142
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- PMC
- PMC162242
- OpenAlex
- W2135305503
- Cited by
- 96
- References
- 58
- Citations by year
- 2026: 3 · 2025: 2 · 2024: 5 · 2023: 1 · 2022: 4 · 2021: 2 · 2020: 4 · 2019: 2 · 2018: 5 · 2017: 4 · 2016: 4 · 2015: 3 · 2014: 6 · 2013: 4 · 2012: 6
- FWCI
- 2.19
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Nucleic Acids Research (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- HAL (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA and Nucleic Acid Chemistry
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Carcinogens and Genotoxicity Assessment
- Keywords
- spore photoproduct, UV-C radiation, thymine dimers, cyclobutane dimers, 6-4 photoproducts, DNA conformation, ethanol, bacterial spores, UV damage
- MeSH terms
- Chromatography, High Pressure Liquid, DNA, DNA Damage, Nucleic Acid Conformation, Pyrimidine Dimers, Mass Spectrometry, Thymidine, Ultraviolet Rays
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review