Vectors expressing efficient RNA decoys achieve the long-term suppression of specific microRNA activity in mammalian cells
Open accessAbstract
Whereas the strong and stable suppression of specific microRNA activity would be essential for the functional analysis of these molecules, and also for the development of therapeutic applications, effective inhibitory methods to achieve this have not yet been fully established. In our current study, we tested various RNA decoys which were designed to efficiently expose indigestible complementary RNAs to a specific miRNA molecule. These inhibitory RNAs were at the same time designed to be expressed in lentiviral vectors and to be transported into the cytoplasm after transcription by RNA polymerase III. We report the optimal conditions that we have established for the design of such RNA decoys (we term these molecules TuD RNAs; tough decoy RNAs). We finally demonstrate that TuD RNAs induce specific and strong biological effects and also show that TuD RNAs achieve the efficient and long-term-suppression of specific miRNAs for over 1 month in mammalian cells.
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Sponge constructs are designed to bind complementary miRNA(s) or their seed sequences, and hence block the binding of the miRNA to its biological targets.
“The sponge construct are designed to bind its complementary miRNA(s) or their seed sequences, and hence block the binding of the miRNA to its biological targets (29–31).”
From Potential Therapeutic Effects of Exosomes Packed With a miR-21-Sponge Construct in a Rat Model of Glioblastoma (2019) · cites this paper as [31]
miRNA inhibition using decoy or sponge-like constructs has potential therapeutic benefit.
“It has already been shown that miRNA inhibition using decoy or sponge-like constructs have a potential therapeutic benefit.”
From Potential Therapeutic Effects of Exosomes Packed With a miR-21-Sponge Construct in a Rat Model of Glioblastoma (2019) · cites this paper as [31]
Using decoy or sponge-like constructs for miRNA inhibition has been shown to bind complementary miRNA(s) or their seed sequences and block their effects.
“Using decoy or sponge-like constructs for miRNA inhibition have been already shown before with good effect in binding to its complementary miRNA(s) or their seed sequences and blocking their effects (29–31, 56, 57).”
From Potential Therapeutic Effects of Exosomes Packed With a miR-21-Sponge Construct in a Rat Model of Glioblastoma (2019) · cites this paper as [31]
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Cites
MicroRNA expression profiles classify human cancers
Lü, J., Getz, G. A., Miska, E. A., Alvarez-Saavedra, E., Lamb, J., Peck, D., Sweet-Cordero, A., Ebert, B. L., Mak, R. H., Ferrando, A. A., et al. (2005) · Nature · doi:10.1038/nature03702 · Cited by 9,497 · see citing works
MicroRNA genes are transcribed by RNA polymerase II
Lee, Y., Kim, M., Han, J., Yeom, K.-H., Lee, S., Baek, S. H., & Kim, V. N. (2004) · The EMBO Journal · doi:10.1038/sj.emboj.7600385 · Cited by 4,355 · see citing works
Silencing of microRNAs in vivo with ‘antagomirs’
Krützfeldt, J., Rajewsky, N., Braich, R., Rajeev, K. G., Tuschl, T., Manoharan, M., & Stoffel, M. (2005) · Nature · doi:10.1038/nature04303 · Cited by 3,949 · see citing works
A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing
Landgraf, P., Rusu, M., Sheridan, R., Sewer, A., Iovino, N., Aravin, A., Pfeffer, S., Rice, A., Kamphorst, A. O., Landthaler, M., et al. (2007) · Cell · doi:10.1016/j.cell.2007.04.040 · Cited by 3,626 · see citing works
Nagai, T., Ibata, K., Park, E. S., Kubota, M., Mikoshiba, K., & Miyawaki, A. (2002) · Nature Biotechnology · doi:10.1038/nbt0102-87 · Cited by 2,755 · see citing works
MicroRNA-21 Is an Antiapoptotic Factor in Human Glioblastoma Cells
Chan, J. A., Krichevsky, A. M., & Kosik, K. S. (2005) · Cancer Research · doi:10.1158/0008-5472.can-05-0137 · Cited by 2,557 · see citing works
Asangani, I. A., Rasheed, S. A. K., Nikolova, D. A., Leupold, J. H., Colburn, N. H., Post, S., & Allgayer, H. (2008) · Oncogene · doi:10.1038/sj.onc.1210856 · Cited by 1,882 · see citing works
MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells
Ebert, M. S., Neilson, J. R., & Sharp, P. A. (2007) · Nature Methods · doi:10.1038/nmeth1079 · Cited by 1,845 · see citing works
miR-181a Is an Intrinsic Modulator of T Cell Sensitivity and Selection
Li, Q.-J., Chau, J., Ebert, P. J. R., Sylvester, G., Min, H., Liu, G., Braich, R. S., Manoharan, M., Soutschek, J., Skare, P., et al. (2007) · Cell · doi:10.1016/j.cell.2007.03.008 · Cited by 1,157 · see citing works
Frankel, L. B., Christoffersen, N. R., Jacobsen, A., Lindow, M., Krogh, A., & Lund, A. H. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m707224200 · Cited by 1,141 · see citing works
RNA interference by expression of short-interfering RNAs and hairpin RNAs in mammalian cells
Yu, J., DeRuiter, S. L., & Turner, D. L. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.092143499 · Cited by 1,045 · see citing works
A Cellular MicroRNA Mediates Antiviral Defense in Human Cells
Lecellier, C., Dunoyer, P., Arar, K., Lehmann‐Che, J., Eyquem, S., Himber, C., Saı̈b, A., & Voinnet, O. (2005) · Science · doi:10.1126/science.1108784 · Cited by 904 · see citing works
Cre-lox-regulated conditional RNA interference from transgenes
Ventura, A., Meissner, A., Dillon, C. P., McManus, M. T., Sharp, P. A., Parijs, L. V., Jaenisch, R., & Jacks, T. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0403954101 · Cited by 623 · see citing works
Sequence-specific inhibition of microRNA- and siRNA-induced RNA silencing
Meister, G., Landthaler, M., Dorsett, Y., & Tuschl, T. (2004) · RNA · doi:10.1261/rna.5235104 · Cited by 619 · see citing works
Sequence-specific inhibition of small RNA function
Hutvágner, G., Simard, M. J., Mello, C. C., & Zamore, P. D. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020098 · Cited by 584 · see citing works
Structural requirements for pre-microRNA binding and nuclear export by Exportin 5
Zeng, Y. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh824 · Cited by 496 · see citing works
A high-throughput method to monitor the expression of microRNA precursors
Schmittgen, T. D. (2004) · Nucleic Acids Research · doi:10.1093/nar/gnh040 · Cited by 481 · see citing works
miR-21 Gene Expression Triggered by AP-1 Is Sustained through a Double-Negative Feedback Mechanism
Fujita, S., Ito, T., Mizutani, T., Minoguchi, S., Yamamichi, N., Sakurai, K., & Iba, H. (2008) · Journal of Molecular Biology · doi:10.1016/j.jmb.2008.03.015 · Cited by 432 · see citing works
Self-citationLNA-modified oligonucleotides mediate specific inhibition of microRNA function
Ørom, U. A., Kauppinen, S., & Lund, A. H. (2006) · Gene · doi:10.1016/j.gene.2005.12.031 · Cited by 373 · see citing works
Akagi, T., Sasai, K., & Hanafusa, H. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1834876100 · Cited by 259 · see citing works
Lentivirus-mediated antagomir expression for specific inhibition of miRNA function
Scherr, M., Venturini, L., Battmer, K., Schaller-Schoenitz, M., Schaefer, D., Dallmann, I., Ganser, A., & Eder, M. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm971 · Cited by 190 · see citing works
CRE recombinase-inducible RNA interference mediated by lentiviral vectors
Tiscórnia, G., Tergaonkar, V., Galimi, F., & Verma, I. M. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0402107101 · Cited by 142 · see citing works
New experimental approaches in retrovirus-mediated expression screening.
Kitamura (1998) · International Journal of Hematology · doi:10.1016/s0925-5710(98)00025-5 · Cited by 126 · see citing works
Yamamichi, N., Yamamichi-Nishina, M., Mizutani, T., Watanabe, H., Minoguchi, S., Kobayashi, N., Kimura, S., Ito, T., Yahagi, N., Ichinose, M., et al. (2005) · Oncogene · doi:10.1038/sj.onc.1208716 · Cited by 105 · see citing works
Self-citationDouble-stranded regions are essential design components of potent inhibitors of RISC function
Vermeulen, A., Robertson, B., Dalby, A. B., Marshall, W. S., Karpilow, J. M., Leake, D., Khvorova, A., & Baskerville, S. (2007) · RNA · doi:10.1261/rna.448107 · Cited by 102 · see citing works
Fujita, S., & Iba, H. (2007) · Bioinformatics · doi:10.1093/bioinformatics/btm589 · Cited by 93 · see citing works
Self-citationAn LNA-based loss-of-function assay for micro-RNAs
Naguibneva, I., Ameyar‐Zazoua, M., Nonne, N., Polesskaya, A., Ait‐Si‐Ali, S., Groisman, R., Souidi, M., Pritchard, L. L., & Harel‐Bellan, A. (2006) · Biomedicine & Pharmacotherapy · doi:10.1016/j.biopha.2006.07.078 · Cited by 64 · see citing works
SiRNAs do not induce RNA‐dependent transcriptional silencing of retrovirus in human cells
Haraguchi, T., Mizutani, T., Yamamichi, N., Ito, T., Minoguchi, S., & Iba, H. (2007) · FEBS Letters · doi:10.1016/j.febslet.2007.09.028 · Cited by 17 · see citing works
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Flagged first, then by citations
1 of the 29 references couldn’t be matched to a known paper.
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The multilayered complexity of ceRNA crosstalk and competition
Tay, Y., Rinn, J., & Pandolfi, P. P. (2014) · Nature · doi:10.1038/nature12986 · Cited by 3,910 · see citing works
Endogenous microRNA sponges: evidence and controversy
Thomson, D. W., & Dinger, M. E. (2016) · Nature Reviews Genetics · doi:10.1038/nrg.2016.20 · Cited by 1,833 · see citing works
Diversifying microRNA sequence and function
Ameres, S. L., & Zamore, P. D. (2013) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3611 · Cited by 1,175 · see citing works
MicroRNA sponges: Progress and possibilities
Ebert, M. S., & Sharp, P. A. (2010) · RNA · doi:10.1261/rna.2414110 · Cited by 762 · see citing works
Experimental strategies for microRNA target identification
Thomson, D. W., Bracken, C. P., & Goodall, G. J. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr330 · Cited by 544 · see citing works
Emerging Roles for Natural MicroRNA Sponges
Ebert, M. S., & Sharp, P. A. (2010) · Current Biology · doi:10.1016/j.cub.2010.08.052 · Cited by 482 · see citing works
Circular RNAs in cancer: novel insights into origins, properties, functions and implications.
Li, J., Yang, J., Zhou, P., Le, Y., Zhou, C., Wang, S., Xu, D., Lin, H., & Gong, Z. (2015) · Europe PMC (PubMed Central) · Cited by 431 · see citing works
Non-coding RNAs in cardiovascular diseases: diagnostic and therapeutic perspectives
Poller, W. C., Dimmeler, S., Heymans, S. R. B., Zeller, T., Haas, J., Karakas, M., Leistner, D. M., Jakob, P., Nakagawa, S., Blankenberg, S., et al. (2017) · European Heart Journal · doi:10.1093/eurheartj/ehx165 · Cited by 412 · see citing works
Mullokandov, G., Baccarini, A., Ruzo, A., Jayaprakash, A. D., Tung, N., Israelow, B., Evans, M. J., Sachidanandam, R., & Brown, B. D. (2012) · Nature Methods · doi:10.1038/nmeth.2078 · Cited by 394 · see citing works
Broderick, J. A., & Zamore, P. D. (2011) · Gene Therapy · doi:10.1038/gt.2011.50 · Cited by 387 · see citing works
Exploiting and antagonizing microRNA regulation for therapeutic and experimental applications
Brown, B. D., & Naldini, L. (2009) · Nature Reviews Genetics · doi:10.1038/nrg2628 · Cited by 383 · see citing works
MicroRNA-125b induces tau hyperphosphorylation and cognitive deficits in Alzheimer’s disease
Banzhaf‐Strathmann, J., Benito, E., May, S., Arzberger, T., Tahirovic, S., Kretzschmar, H., Fischer, A., & Edbauer, D. (2014) · The EMBO Journal · doi:10.15252/embj.201387576 · Cited by 326 · see citing works
Adult-specific functions of animal microRNAs
Sun, K., & Lai, E. C. (2013) · Nature Reviews Genetics · doi:10.1038/nrg3471 · Cited by 333 · see citing works
Epigenetic Regulation of the DLK1-MEG3 MicroRNA Cluster in Human Type 2 Diabetic Islets
Kameswaran, V., Bramswig, N. C., McKenna, L. B., Penn, M. M. C., Schug, J., Hand, N. J., Chen, Y., Choi, I., Vourekas, A., Won, K., et al. (2014) · Cell Metabolism · doi:10.1016/j.cmet.2013.11.016 · Cited by 316 · see citing works
Extracellular ATP mediates mast cell-dependent intestinal inflammation through P2X7 purinoceptors
Kurashima, Y., Amiya, T., Nochi, T., Fujisawa, K., Haraguchi, T., Iba, H., Tsutsui, H., Sato, S., Nakajima, S., Iijima, H., et al. (2012) · Nature Communications · doi:10.1038/ncomms2023 · Cited by 286 · see citing works
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McNeill, E., & Van Vactor, D. (2012) · Neuron · doi:10.1016/j.neuron.2012.07.005 · Cited by 274 · see citing works
Gambari, R., Brognara, E., Spandidos, D. A., & Fabbri, E. (2016) · International Journal of Oncology · doi:10.3892/ijo.2016.3503 · Cited by 261 · see citing works
Fujita, Y., Yagishita, S., Hagiwara, K., Yoshioka, Y., Kosaka, N., Takeshita, F., Fujiwara, T., Tsuta, K., Nokihara, H., Tamura, T., et al. (2015) · Molecular Therapy · doi:10.1038/mt.2015.10 · Cited by 262 · see citing works
Parikh, A., Lee, C., Joseph, P., Marchini, S., Baccarini, A., Kolev, V., Romualdi, C., Fruscio, R., Shah, H., Wang, F., et al. (2014) · Nature Communications · doi:10.1038/ncomms3977 · Cited by 258 · see citing works
miRNA sponges: soaking up miRNAs for regulation of gene expression
Bak, R. O., & Mikkelsen, J. G. (2013) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.1213 · Cited by 239 · see citing works
Qi, L., Bart, J., Tan, L. P., Platteel, I., van der Sluis, T., Huitema, S., Harms, G., Fu, L., Hollema, H., & van den Berg, A. (2009) · BMC Cancer · doi:10.1186/1471-2407-9-163 · Cited by 229 · see citing works
miR‐301a as an NF‐κB activator in pancreatic cancer cells
Lu, Z., Li, Y., Takwi, A. A., Li, B., Zhang, J., Conklin, D. J., Young, K. H., Martin, R. C. G., & Li, Y. (2010) · The EMBO Journal · doi:10.1038/emboj.2010.296 · Cited by 227 · see citing works
miRNA Therapeutics: A New Class of Drugs with Potential Therapeutic Applications in the Heart
Bernardo, B. C., Ooi, J. Y. Y., Lin, R. C. Y., & McMullen, J. R. (2015) · Future Medicinal Chemistry · doi:10.4155/fmc.15.107 · Cited by 229 · see citing works
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Xie, J., Ameres, S. L., Friedline, R. H., Hung, J., Zhang, Y., Xie, Q., Li, Z., Su, Q., He, R., Li, M., et al. (2012) · Nature Methods · doi:10.1038/nmeth.1903 · Cited by 216 · see citing works
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Shea, A. A., Harish, V., Afzal, Z., Chijioke, J., Kedir, H., Dusmatova, S., Roy, A., Ramalinga, M., Harris, B. T., Blancato, J. K., et al. (2016) · Cancer Medicine · doi:10.1002/cam4.775 · Cited by 207 · see citing works
Insect MicroRNAs: Biogenesis, expression profiling and biological functions
Lucas, K. J., & Raikhel, A. S. (2012) · Insect Biochemistry and Molecular Biology · doi:10.1016/j.ibmb.2012.10.009 · Cited by 203 · see citing works
Li, H., Fan, J., Zhao, Y., Zhang, X., Dai, B., Zhan, J., Yin, Z., Nie, X., Fu, X., Chen, C., et al. (2019) · Circulation Research · doi:10.1161/circresaha.119.314898 · Cited by 207 · see citing works
Sequence-non-specific effects of RNA interference triggers and microRNA regulators
Olejniczak, M., Galka-Marciniak, P., & Krzyżosiak, W. J. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp829 · Cited by 201 · see citing works
Potent degradation of neuronal miRNAs induced by highly complementary targets
de la Mata, M., Gaidatzis, D., Vitanescu, M., Stadler, M. B., Wentzel, C., Scheiffele, P., Filipowicz, W., & Großhans, H. (2015) · The EMBO Reports · doi:10.15252/embr.201540078 · Cited by 201 · see citing works
Small silencing RNAs: State-of-the-art
Grimm, D. (2009) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2009.05.002 · Cited by 186 · see citing works
Matsuyama, H., Suzuki, H. I., Nishimori, H., Noguchi, M., Yao, T., Komatsu, N., Mano, H., Sugimoto, K., & Miyazono, K. (2011) · Blood · doi:10.1182/blood-2011-05-354654 · Cited by 182 · see citing works
Synthetic RNA-Based Immunomodulatory Gene Circuits for Cancer Immunotherapy
Nissim, L., Wu, M.-R., Pery, E., Binder-Nissim, A., Suzuki, H. I., Stupp, D., Wehrspaun, C. C., Tabach, Y., Sharp, P. A., & Lu, T. K. (2017) · Cell · doi:10.1016/j.cell.2017.09.049 · Cited by 176 · see citing works
A selective microRNA-based strategy inhibits restenosis while preserving endothelial function
Santulli, G., Wronska, A., Uryu, K., Diacovo, T. G., Gao, M., Marx, S. O., Kitajewski, J., Chilton, J. M., Akat, K. M., Tuschl, T., et al. (2014) · Journal of Clinical Investigation · doi:10.1172/jci76069 · Cited by 176 · see citing works
Yamamichi, N., Shimomura, R., Inada, K.-I., Sakurai, K., Haraguchi, T., Ozaki, Y., Fujita, S., Mizutani, T., Furukawa, C., Fujishiro, M., et al. (2009) · Clinical Cancer Research · doi:10.1158/1078-0432.ccr-08-3257 · Cited by 173 · see citing works
Self-citationGood guy or bad guy: the opposing roles of microRNA 125b in cancer
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Gagan, J., Dey, B. K., Layer, R. M., Yan, Z., & Dutta, A. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.219006 · Cited by 168 · see citing works
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Wang, Z., Rao, D. D., Senzer, N. N., & Nemunaitis, J. J. (2011) · Pharmaceutical Research · doi:10.1007/s11095-011-0604-5 · Cited by 166 · see citing works
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Albanese, M., Tagawa, T., Bouvet, M., Maliqi, L., Lutter, D., Hoser, J., Hastreiter, M., Hayes, M., Sugden, B., Martin, L. K., et al. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1605884113 · Cited by 165 · see citing works
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Banno, K., Iida, M., Yanokura, M., Kisu, I., Iwata, T., Tominaga, E., Tanaka, K., & Aoki, D. (2014) · The Scientific World JOURNAL · doi:10.1155/2014/178075 · Cited by 143 · see citing works
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Lee, D. Y., Jeyapalan, Z., Fang, L., Yang, J., Zhang, Y., Yee, A. Y., Li, M., Du, W. W., Shatseva, T., & Yang, B. B. (2010) · PLoS ONE · doi:10.1371/journal.pone.0013599 · Cited by 138 · see citing works
Busch, B., Bley, N., Müller, S., Glaß, M., Misiak, D., Lederer, M., Vetter, M., Strauß, H., Thomssen, C., & Hüttelmaier, S. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw099 · Cited by 139 · see citing works
Rapid Generation of MicroRNA Sponges for MicroRNA Inhibition
Kluiver, J. L., Gibcus, J. H., Hettinga, C., Adema, A., van Duijl-Richter, M. K. S., Halsema, N., Ślęzak-Prochazka, I., Ding, Y., Kroesen, B., & van den Berg, A. (2012) · PLoS ONE · doi:10.1371/journal.pone.0029275 · Cited by 138 · see citing works
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Using artificial microRNA sponges to achieve microRNA loss-of-function in cancer cells
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Karnati, H. K., Panigrahi, M. K., Gutti, R. K., Greig, N. H., & Tamargo, I. A. (2015) · Journal of Alzheimer s Disease · doi:10.3233/jad-150395 · Cited by 125 · see citing works
Monfared, H., Jahangard, Y., Nikkhah, M., Mirnajafi-Zadeh, J., & Mowla, S. J. (2019) · Frontiers in Oncology · doi:10.3389/fonc.2019.00782 · Cited by 123 · see citing works
Blaya, D., Coll, M., Rodrigo‐Torres, D., Vila-Casadesús, M., Altamirano, J., Llopis, M., Graupera, I., Perea, L., Aguilar‐Bravo, B., Díaz, A., et al. (2016) · Gut · doi:10.1136/gutjnl-2015-311314 · Cited by 122 · see citing works
Xie, Q., Chen, X., Lu, F., Zhang, T., Hao, M., Wang, Y., Zhao, J., McCrae, M. A., & Zhuang, H. (2011) · Cancer · doi:10.1002/cncr.26566 · Cited by 118 · see citing works
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Kluiver, J. L., Ślęzak-Prochazka, I., Smigielska‐Czepiel, K., Halsema, N., Kroesen, B., & van den Berg, A. (2012) · Methods · doi:10.1016/j.ymeth.2012.07.019 · Cited by 112 · see citing works
Sakurai, K., Furukawa, C., Haraguchi, T., Inada, K.-I., Shiogama, K., Tagawa, T., Fujita, S., Ueno, Y., Ogata, A., Ito, M., et al. (2010) · Cancer Research · doi:10.1158/0008-5472.can-10-2345 · Cited by 111 · see citing works
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Murai, K., Sun, G., Ye, P., Tian, E., Su, Y., Cui, Q., Sun, G., Trinh, D. V., Sun, O., Hong, T., et al. (2016) · Nature Communications · doi:10.1038/ncomms10965 · Cited by 108 · see citing works
Ruggeri, C., Gioffré, S., Achilli, F., Colombo, G. I., & D’Alessandra, Y. (2017) · Heart Failure Reviews · doi:10.1007/s10741-017-9653-0 · Cited by 105 · see citing works
The Non-coding 3′UTR of CD44 Induces Metastasis by Regulating Extracellular Matrix Functions
Jeyapalan, Z., & Yang, B. B. (2012) · Journal of Cell Science · doi:10.1242/jcs.100818 · Cited by 103 · see citing works
EBV MicroRNA BART16 Suppresses Type I IFN Signaling
Hooykaas, M. J. G., van Gent, M., Soppe, J. A., Kruse, E. M., Boer, I. G. J., van Leenen, D., Koerkamp, M. J. A. G., Holstege, F. C. P., Ressing, M. E., Wiertz, E. J. H. J., et al. (2017) · The Journal of Immunology · doi:10.4049/jimmunol.1501605 · Cited by 103 · see citing works
From traditional pharmacological towards nucleic acid-based therapies for cardiovascular diseases
Landmesser, U., Poller, W. C., Tsimikas, S., Most, P., Paneni, F., & Lüscher, T. F. (2020) · European Heart Journal · doi:10.1093/eurheartj/ehaa229 · Cited by 100 · see citing works
MiRNA inhibition in tissue engineering and regenerative medicine
Beavers, K. R., Nelson, C. E., & Duvall, C. L. (2014) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2014.12.006 · Cited by 98 · see citing works
Singh, Y., Garden, O. A., Lang, F. J. W., & Cobb, B. S. (2015) · The Journal of Immunology · doi:10.4049/jimmunol.1401875 · Cited by 97 · see citing works
Liu, X., Mei, W., Padmanaban, V., Alwaseem, H., Molina, H., Passarelli, M. C., Tavora, B., & Tavazoie, S. F. (2022) · Molecular Cell · doi:10.1016/j.molcel.2022.05.008 · Cited by 96 · see citing works
Gagan, J., Dey, B. K., Layer, R. M., Yan, Z., & Dutta, A. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.378414 · Cited by 96 · see citing works
Target RNAs Strike Back on MicroRNAs
Fuchs Wightman, F., Giono, L. E., Fededa, J. P., & de la Mata, M. (2018) · Frontiers in Genetics · doi:10.3389/fgene.2018.00435 · Cited by 90 · see citing works
miRNAsong: a web-based tool for generation and testing of miRNA sponge constructs in silico
Bárta, T., Pešková, L., & Hampl, A. (2016) · Scientific Reports · doi:10.1038/srep36625 · Cited by 89 · see citing works
PBX3 is targeted by multiple miRNAs and is essential for liver tumour-initiating cells
Han, H., Du, Y., Zhao, W., Li, S., Chen, D., Zhang, J., Liu, J., Suo, Z., Bian, X., Xing, B., et al. (2015) · Nature Communications · doi:10.1038/ncomms9271 · Cited by 87 · see citing works
microRNAs in nociceptive circuits as predictors of future clinical applications
Kress, M., Hüttenhofer, A., Landry, M., Kuner, R., Favereaux, A., Greenberg, D., Bednařík, J., Heppenstall, P. A., Kronenberg, F., Malcangio, M., et al. (2013) · Frontiers in Molecular Neuroscience · doi:10.3389/fnmol.2013.00033 · Cited by 83 · see citing works
Expression profile of circular RNAs in human gastric cancer tissues
Huang, Y., Jie, N., Zou, K., & Weng, Y. (2017) · Molecular Medicine Reports · doi:10.3892/mmr.2017.6916 · Cited by 84 · see citing works
Enhanced Inhibition of Tumorigenesis Using Combinations of miRNA-Targeted Therapeutics
Miroshnichenko, S. K., & Patutina, O. (2019) · Frontiers in Pharmacology · doi:10.3389/fphar.2019.00488 · Cited by 81 · see citing works
Potent microRNA suppression by RNA Pol II-transcribed ‘Tough Decoy’ inhibitors
Bak, R. O., Hollensen, A. K., Primo, M. N., Sørensen, C. D., & Mikkelsen, J. G. (2012) · RNA · doi:10.1261/rna.034850.112 · Cited by 79 · see citing works
Niederberger, E., Resch, E., Parnham, M. J., & Geißlinger, G. (2017) · Nature Reviews Neurology · doi:10.1038/nrneurol.2017.68 · Cited by 77 · see citing works
Lepko, T., Pusch, M., Müller, T., Schulte, D., Ehses, J., Kiebler, M. A., Hasler, J., Huttner, H. B., Vandenbroucke, R. E., Vandendriessche, C., et al. (2019) · The EMBO Journal · doi:10.15252/embj.2018100481 · Cited by 72 · see citing works
Wagenaar, T. R., Zabludoff, S., Ahn, S., Allerson, C. R., Arlt, H., Baffa, R., Cao, H., Davis, S. P., Garcı́a-Echeverrı́a, C., Gaur, R., et al. (2015) · Molecular Cancer Research · doi:10.1158/1541-7786.mcr-14-0703 · Cited by 74 · see citing works
Guo, Y. X., Cui, J. G., Ji, Z., Cheng, C., Zhang, K., Zhang, C., Chu, M., Zhao, Q., Yu, Z., Zhang, Y., et al. (2017) · Oncogene · doi:10.1038/onc.2017.240 · Cited by 72 · see citing works
microRNA inhibitors: Natural and artificial sequestration of microRNA
Tang, L., Chen, H., Hao, N.-B., Tang, B., Guo, H., Yong, X., Dong, H. F., & Yang, S. (2017) · Cancer Letters · doi:10.1016/j.canlet.2017.05.025 · Cited by 71 · see citing works
Wang, L., Yu, P., Li, B., Guo, Y., Liang, Z., Zheng, L., Yang, J., Xu, H. M., Liu, S., Zheng, L., et al. (2018) · Molecular Oncology · doi:10.1002/1878-0261.12376 · Cited by 69 · see citing works
MicroRNA turnover: a tale of tailing, trimming, and targets
Han, J., & Mendell, J. T. (2022) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2022.06.005 · Cited by 71 · see citing works
Opportunities and challenges for microRNA-targeting therapeutics for epilepsy
Morris, G., O’Brien, D., & Henshall, D. C. (2021) · Trends in Pharmacological Sciences · doi:10.1016/j.tips.2021.04.007 · Cited by 65 · see citing works
Regulation of host and virus genes by neuronal miR-138 favours herpes simplex virus 1 latency
Sun, B., Yang, X., Hou, F., Yu, X., Wang, Q., Oh, H. S., Raja, P., Pesola, J. M., Vanni, E. A. H., McCarron, S., et al. (2021) · Nature Microbiology · doi:10.1038/s41564-020-00860-1 · Cited by 65 · see citing works
Radiotherapy-induced miR-223 prevents relapse of breast cancer by targeting the EGF pathway
Fabris, L., Berton, S., Citron, F., D’Andrea, S., Segatto, I., Nicoloso, M. S., Massarut, S., Armenia, J., Zafarana, G., Rossi, S., et al. (2016) · Oncogene · doi:10.1038/onc.2016.23 · Cited by 64 · see citing works
Braun, J., Misiak, D., Busch, B., Krohn, K., & Hüttelmaier, S. (2014) · Nucleic Acids Research · doi:10.1093/nar/gku127 · Cited by 63 · see citing works
Shao, N., Ma, G., Zhang, J., & Zhu, W. (2018) · BMC Urology · doi:10.1186/s12894-018-0325-8 · Cited by 62 · see citing works
MicroRNA-mediated repression of nonsense mRNAs
Zhao, Y., Lin, J., Xu, B., Hu, S., Zhang, X., & Wu, L. (2014) · eLife · doi:10.7554/elife.03032 · Cited by 63 · see citing works
Naka-Kaneda, H., Nakamura, S., Igarashi, M., Aoi, H., Kanki, H., Tsuyama, J., Tsutsumi, S., Aburatani, H., Shimazaki, T., & Okano, H. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1315567111 · Cited by 62 · see citing works
Tiny giants of gene regulation: experimental strategies for microRNA functional studies
Steinkraus, B. R., Tögel, M., & Fulga, T. A. (2016) · Wiley Interdisciplinary Reviews Developmental Biology · doi:10.1002/wdev.223 · Cited by 62 · see citing works
Upregulation of miR-24 promotes cell proliferation by targeting NAIF1 in non-small cell lung cancer
Zhao, G., Liu, L., Zhao, T., Jin, S., Jiang, S., Cao, S., Han, J., Xin, Y., Dong, Q., Liu, X., et al. (2015) · Tumor Biology · doi:10.1007/s13277-014-3008-4 · Cited by 61 · see citing works
Rectal microRNAs are perturbed in pediatric inflammatory bowel disease of the colon
Zahm, A. M., Hand, N. J., Tsoucas, D. M., Guen, C. L. L., Baldassano, R. N., & Friedman, J. R. (2014) · Journal of Crohn s and Colitis · doi:10.1016/j.crohns.2014.02.012 · Cited by 61 · see citing works
Qian, D., Wei, G., Xu, C., He, Z., Hua, J., Li, J. J., Hu, Q., Lin, S., Gong, J., Meng, H., et al. (2017) · Scientific Reports · doi:10.1038/s41598-017-00629-3 · Cited by 60 · see citing works
Hung, T., Ho, C., Liu, Y., Lee, J.-L., Liao, Y.-R., Wu, Y., Ho, M., Chen, C., Lai, H., & Lee, P. (2014) · PLoS ONE · doi:10.1371/journal.pone.0089446 · Cited by 60 · see citing works
Zeng, Y., Liu, H., Kang, K., Wang, Z., Hui, G., Zhang, X., Zhong, J., Peng, W., Ramchandran, R., Raj, J. U., et al. (2015) · Scientific Reports · doi:10.1038/srep12098 · Cited by 58 · see citing works
Advances in the discovery of microRNA-based anticancer therapeutics: latest tools and developments
To, K. K. W., Fong, W., Tong, C. W. S., Wu, M., Yan, W., & Cho, W. C. S. (2019) · Expert Opinion on Drug Discovery · doi:10.1080/17460441.2020.1690449 · Cited by 57 · see citing works
The Duality of OncomiR Addiction in the Maintenance and Treatment of Cancer
Cheng, C. J., & Slack, F. J. (2012) · The Cancer Journal · doi:10.1097/ppo.0b013e318258b75b · Cited by 57 · see citing works
Li, D., Mastaglia, F. L., Fletcher, S., & Wilton, S. D. (2020) · Medicinal Research Reviews · doi:10.1002/med.21718 · Cited by 57 · see citing works
RNAi Therapeutics and Applications of MicroRNAs in Cancer Treatment
Uchino, K., Ochiya, T., & Takeshita, F. (2013) · Japanese Journal of Clinical Oncology · doi:10.1093/jjco/hyt052 · Cited by 56 · see citing works
Hikichi, M., Kidokoro, M., Haraguchi, T., Iba, H., Shida, H., Tahara, H., & Nakamura, T. (2011) · Molecular Therapy · doi:10.1038/mt.2011.36 · Cited by 54 · see citing works
Self-citationQiu, H., Liu, N., Luo, L., Zhong, J., Tang, Z., Kang, K., Qu, J., Peng, W., Liu, L., Li, L., et al. (2016) · Cell Death and Differentiation · doi:10.1038/cdd.2016.56 · Cited by 54 · see citing works
- Authors
- Haraguchi, T., Ozaki, Y., & Iba, H.
- Affiliations
- Institute of Medical Science, The University of Tokyo (JP)
- Corresponding author
- Iba, Hideo
- ORCID
- Haraguchi, Takeshi
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-02-17
- Volume
- 37
- Issue
- 6
- Pages
- e43-e43
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- PMC
- PMC2665227
- OpenAlex
- W2128520557
- Cited by
- 305
- References
- 29
- Citations by year
- 2026: 6 · 2025: 8 · 2024: 15 · 2023: 6 · 2022: 14 · 2021: 10 · 2020: 20 · 2019: 18 · 2018: 21 · 2017: 27 · 2016: 29 · 2015: 24 · 2014: 33 · 2013: 23 · 2012: 23
- FWCI
- 5.59
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Nucleic Acids Research (publishedVersion, cc-by-nc)
- PubMed Central (publishedVersion, cc-by-nc)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › MicroRNA in disease regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer-related molecular mechanisms research
- Keywords
- microRNA inhibition, RNA decoys, lentiviral vectors, RNA polymerase III transcription, mammalian cells
- MeSH terms
- Binding Sites, Cell Line, Genetic Vectors, Humans, Nucleic Acid Conformation, Transduction, Genetic, Lentivirus, Genes, Reporter, RNA, Untranslated, MicroRNAs
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