Epigenetics and cancer
Open accessAbstract
Epigenetic mechanisms act to change the accessibility of chromatin to transcriptional regulation locally and globally via modifications of the DNA and by modification or rearrangement of nucleosomes. Epigenetic gene regulation collaborates with genetic alterations in cancer development. This is evident from every aspect of tumor biology including cell growth and differentiation, cell cycle control, DNA repair, angiogenesis, migration, and evasion of host immunosurveillance. In contrast to genetic cancer causes, the possibility of reversing epigenetic codes may provide new targets for therapeutic intervention.
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- Interpretationreasoning§ REVIEW Epigenetics and cancer
Epigenetic gene regulation works together with genetic changes in cancer development.
“Epigenetic gene regulation collaborates with genetic alterations in cancer development.”
Quote in the paperSubstantial claim - Interpretationreasoning§ REVIEW Epigenetics and cancer
Evidence for epigenetic collaboration with genetic alterations appears in all major aspects of tumor biology, including growth and differentiation, cell cycle control, DNA repair, angiogenesis, migration, and immune evasion.
“This is evident from every aspect of tumor biology including cell growth and differentiation, cell cycle control, DNA repair, angiogenesis, migration, and evasion of host immunosurveillance.”
Quote in the paperNot a substantial claim - Interpretationreasoning§ REVIEW Epigenetics and cancer
Some genes, such as cell cycle checkpoint genes and genes responding to external stimuli like growth factors or cell-cell contact, likely exist in a balanced state that is sensitive to dynamic histone modification changes, enabling rapid responses.
“However, other genes, such as cell cycle checkpoint genes and genes directly affected by exogenous stimuli such as growth factors or cell-cell contact, likely reside in a balanced state sensitive to dynamic adjustments in histone modifications, thereby allowing for rapid responses to specific stimuli.”
Quote in the paperNot a substantial claim - Premisecitation
Phosphorylation of H3 Ser10 also facilitates acetylation of Lys9, preventing repressive Lys9 methylation marks.
“Ser 10 phosphorylation also facilitates acetylation of Lys 9, thereby preventing the setting of repressive Lys 9 methylation marks (Rea et al. 2000).”
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- Premisereasoning§ REVIEW Epigenetics and cancer
Epigenetic gene regulation generally has high integrity and stability.
“Not surprisingly therefore, epigenetic gene regulation is characterized overall by a high degree of integrity and stability.”
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- Premisecitation
Trimethylation of histone H3 Lys4 correlates with transcriptional activity.
“Trimethylation of Lys 4 on histone H3 correlates with transcriptional activity (Santos-Rosa et al. 2002),”
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- Premisecitation
EZH2 is overexpressed in many cancers.
“EZH2 is overexpressed in many cancers (Varambally et al. 2002;Bracken et al. 2003;Kleer et al. 2003;Raaphorst et al. 2003)”
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- cites Bracken et al. 2003
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- cites Kleer et al. 2003
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- Premisecitation
EZH2 expression level correlates with poorer prognosis in prostate and breast cancer.
“the expression level of EZH2 correlates with a poorer prognosis in both prostate (Varambally et al. 2002) and breast cancer (Kleer et al. 2003).”
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- cites Kleer et al. 2003
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- Premisenone given
The other four human MLL homologs reside in cancer-related loci.
“and the other four human MLL homologs all reside in cancer-related loci.”
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Bromodomain- and chromodomain-containing proteins recognize histone tail marks and bind chromatin to initiate processes such as chromatin compaction, transcriptional regulation, or DNA repair.
“A second group of proteins, containing bromodomain and chromodomain modules, use the epigenetic marks on the histone tails as recognition landmarks to bind the chromatin and initiate downstream biological processes such as chromatin compaction, transcriptional regulation, or DNA repair (Fig. 2).”
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PcG complexes together with TrxG proteins are thought to form a cellular memory system that maintains the epigenetic status of target genes throughout the organism's lifetime.
“Together with the Trithorax group (TrxG) of proteins, which form positively acting transcriptional regulators (see following), the PcG complexes are thought to constitute a cellular memory system responsible for maintaining the epigenetic status of target genes throughout the lifetime of the organism (Jacobs and van Lohuizen 1999;Orlando 2003;Lund and van Lohuizen 2004).”
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- cites Orlando 2003
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- cites Lund and van Lohuizen 2004
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- Premisenone given§ REVIEW Epigenetics and cancer
Apart from controlled genomic rearrangements such as immunoglobulin and T-cell receptor genes, differentiation processes are initiated or maintained by epigenetic processes.
“With the exception of controlled genomic rearrangements, such as those of the immunoglobulin and T-cell receptor genes in B and T cells, all other differentiation processes are initiated or maintained through epigenetic processes.”
Quote in the paperSubstantial claim - Premisecitation
RNAi-mediated knockdown of EZH2 or EED in human primary or transformed cells blocks proliferation.
“RNAi-mediated knockdown of EZH2 or EED in human primary or transformed cells results in a block of proliferation (Varambally et al. 2002;Bracken et al. 2003),”
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- cites Bracken et al. 2003
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- Premisereasoning§ REVIEW Epigenetics and cancer
In somatic cells, most genes have their transcriptional status epigenetically fixed.
“In somatic cells, the transcriptional status of most genes is epigenetically fixed.”
Quote in the paperSubstantial claim - Premisecitation
One study found MLL1 in a large protein assembly containing subunits capable of regulating transcription preinitiation, nucleosome remodeling, histone acetylation, and histone methylation.
“and one study found MLL1 to reside in a large protein assembly containing subunits capable of regulating transcription preinitiation, nucleosome remodeling, histone acetylation, and histone methylation (Nakamura et al. 2002).”
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- Premisecitation
MLL1 associates with other epigenetic regulators, including HAT CBP and INI1, a subunit of the SWI/SNF nucleosome remodeling complex.
“MLL1 has been found to associate with other epigenetic regulators, such as the HAT CBP (Ernst et al. 2001) and INI1 (Rozenblatt-Rosen et al. 1998), a subunit of the SWI/SNF nucleosome remodeling complex,”
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- cites Rozenblatt-Rosen et al. 1998
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- Premisecitation
Emerging data suggest that PRC2 complex composition may influence the type of methylation imprint imposed by EZH2.
“Interestingly, emerging data suggest that the PRC2 complex composition may influence the type of methylation imprint imposed by EZH2, thereby adding yet another level of regulation (Kuzmichev et al. 2004).”
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- Premisecitation
MLL1 is involved in 11q23 translocations in acute leukemias.
“The mixed lineage leukemia gene (MLL1, also known as HRX or ALL1) is involved in 11q23 translocations in acute leukemias (Djabali et al. 1992;Gu et al. 1992;Tkachuk et al. 1992),”
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- cites Gu et al. 1992
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- cites Tkachuk et al. 1992
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- Premisenone given
Several SET domain proteins have been shown to be methyltransferases that covalently modify histone lysine residues.
“Several SET (SuVar39, Enhancer of Zeste, and Trithorax) domain proteins have been demonstrated to be methyltransferases capable of covalently altering the lysine residues of histone proteins.”
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Both PRC1 and PRC2 members have been linked to cell cycle control and cancer.
“Both PRC1 and PRC2 complex members have been linked to cell cycle control and cancer.”
Quote in the paperNot a substantial claim - Interpretationreasoning
Some histone modifications act as molecular switches that enable or block other covalent marks.
“Hence, some histone modifications may act as molecular switches, enabling or blocking the setting of other covalent marks (Fischle et al. 2003).”
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- Premisecitation
In combination with other covalent modifications, histone methylations are thought to form an epigenetic code by creating binding interfaces for chromatin-regulatory proteins.
“In combination with other covalent modifications such as acetylation, phosphorylation, and ubiquitination, methylations of histone proteins are thought to represent an epigenetic code by the creation of binding interfaces for proteins involved in chromatin regulation (Strahl and Allis 2000;Jenuwein and Allis 2001;Lachner et al. 2003).”
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- cites Jenuwein and Allis 2001
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- cites Lachner et al. 2003
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- Premisecitation
MLL1 is a histone H3 Lys4-specific methyltransferase.
“and MLL1 was recently shown to be a histone H3 Lys 4-specific methyltransferase (Milne et al. 2002;Nakamura et al. 2002).”
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- cites Nakamura et al. 2002
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- Premisecitation
Many SET domain proteins are closely linked to cancer development.
“Many SET domain proteins have been tightly linked to cancer development (Huang 2002;Schneider et al. 2002)”
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- cites Schneider et al. 2002
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- Interpretationreasoning§ REVIEW Epigenetics and cancer
Accumulating evidence indicates that the intrinsic stability of epigenetic regulation arises from multiple interlocking feedback mechanisms between functionally unrelated epigenetic layers, such as DNMTs and histone-modifying enzymes, leading to stable commitment of a locus.
“Evidence is accumulating that suggests that the intrinsic stability is caused by multiple interlocking feedback mechanisms between functionally unrelated epigenetic layers, such as DNA methyltransferases (DNMTs) and histone modifying enzymes, resulting in the stable commitment of a locus to a particular activity state.”
Quote in the paperSubstantial claim - Interpretationreasoning§ REVIEW Epigenetics and cancer
Disruption of epigenetic balances can alter gene expression and ultimately lead to cellular transformation and malignant growth.
“Perturbation of epigenetic balances may lead to alterations in gene expression, ultimately resulting in cellular transformation and malignant outgrowth;”
Quote in the paperSubstantial claim - Premisecitation
Mice lacking Riz1 function only are prone to tumor formation.
“and mice lacking Riz1 function only are prone to tumor formation (Steele-Perkins et al. 2001).”
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- Premisecitation
The RIZ gene is located on chromosome 1p36, a frequently deleted region in human cancers.
“The RIZ gene is situated on chromosome 1p36 in one of the most frequently deleted regions in human cancers (Buyse et al. 1996;Huang 2002),”
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- cites Huang 2002
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- Premisenone given
The RIZ gene produces RIZ1 and RIZ2 through alternative promoters.
“The RIZ gene produces two proteins, RIZ1 and RIZ2, because of the use of alternative promoters.”
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The RIZ1 SET domain is a histone H3 Lys9-specific methyltransferase.
“The RIZ1 SET domain was recently shown to be a histone H3 Lys 9specific methyltransferase (Kim et al. 2003).”
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- Premisecitation
Drosophila Ash1 is a histone methyltransferase capable of methylating H3 Lys4 and Lys9 and H4 Lys20.
“A similarly orchestrated epigenetic regulation was demonstrated for the Drosophila Trithorax-like protein Ash1, a histone methyltransferase (HMT) capable of methylating Lys 4 and Lys 9 of histone H3 and Lys 20 on histone H4 (Beisel et al. 2002).”
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- Premisereasoning
This repressive system is self-sustaining cyclically because HP1 associates directly with SUV39H1.
“This ancient repressive system is self-sustaining in a cyclic manner, as HP1 associates directly with SUV39H1.”
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EVI1 acts dominantly over its presumed antagonist MDS-EVI1.
“EVI1 acts dominantly over its presumed antagonist MDS-EVI1 (Soderholm et al. 1997;Sitailo et al. 1999),”
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- cites Sitailo et al. 1999
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- Premisecitation
SUV39H1 stabilizes heterochromatic regions by trimethylating histone H3 Lys9.
“SUV39H1 is involved in stabilizing heterochromatic regions of the genome via trimethylation of histone H3 Lys 9 (Rea et al. 2000;Peters et al. 2001).”
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- cites Peters et al. 2001
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High EVI1 expression correlates with poor prognosis in acute myeloid leukemia patients.
“and high EVI1 expression correlates with poor prognosis in patients with acute myeloid leukemia (Barjesteh van Waalwijk van Doorn-Khosrovani et al. 2003).”
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- Premisecitation
The H3 Lys9 methyl imprint creates an anchor point for chromodomain proteins of the HP1 family.
“This methyl imprint creates an anchor point for chromodomain proteins of the HP1 family (Bannister et al. 2001;Lachner et al. 2001).”
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- cites Lachner et al. 2001
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Recent Drosophila data indicate that TrxG proteins such as Trx and Ash1 specifically prevent inappropriate silencing by PcG repressors rather than acting as general transcriptional coactivators.
“Interestingly, recent data from Drosophila studies indicate that TrxG proteins such as Trx and Ash1, rather than being general transcriptional coactivators, specifically function to prevent inappropriate silencing mediated by the PcG of transcriptional repressors (Klymenko and Muller 2004).”
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- Premisecitation
The oncogenic capacity of several MLL fusion proteins has been verified in transgenic mice.
“The oncogenic capacity of several MLL fusion proteins has been verified in transgenic mice (Corral et al. 1996;Dobson et al. 1999).”
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- cites Dobson et al. 1999
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- Interpretationcitation
In other MLL translocation products, the fusion partner moiety is likely capable of sequestering coactivators or nucleosome remodeling factors that contribute to oncogenesis.
“In other MLL translocation products, the fusion partner moiety is likely capable of sequestering coactivators or nucleosome remodeling factors contributing to oncogenesis (discussed in So and Cleary 2004).”
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- Premisecitation
Dimerization of MLL fusion partners may be important in some translocations.
“Recent data have demonstrated that dimerization of the MLL fusion partners may be an important virtue in some translocations (So et al. 2003).”
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- Interpretationcitation
Tumor-derived pRB mutants have been identified that do not bind SUV39H proteins, indicating the importance of this association.
“Tumor-derived mutants of pRB have been identified that do not bind SUV39H proteins, signifying the importance of the association (Nielsen et al. 2001).”
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siRNA-mediated knockdown of SMYD3 in hepatoma and colorectal cancer cell lines has growth-inhibitory effects.
“Conversely, siRNA-mediated knockdown of SMYD3 in cell lines derived from hepatomas and colorectal cancers was shown to have growth-inhibitory effects (Hamamoto et al. 2004).”
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The known MLL target genes HoxA7 and HoxA9 are both required for leukemia induction by an MLL fusion oncogene.
“Intriguingly, the known MLL target genes HoxA7 and HoxA9 are both required for leukemia induction by an MLL fusion oncogene (Ayton and Cleary 2003).”
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Suv39h1/2 is important for regulating mammalian telomere length.
“Recently, Suv39h1/2 was also shown to be important for regulating the length of mammalian telomeres (Garcia-Cao et al. 2004).”
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MLL fusion proteins appear to exert dominant-negative functions over wild-type MLL.
“Rather, the fusion proteins appear to exert dominant-negative functions over wild-type MLL (Arakawa et al. 1998;Ayton and Cleary 2001).”
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- cites Ayton and Cleary 2001
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RIZ is inactivated by mutations or DNA methylation in many human tumors, including breast, liver, colorectal, lung, lymphomas, and melanomas.
“and RIZ has been found to be inactivated by mutations or DNA methylation in a wide variety of human tumors including breast cancer, liver cancer, colorectal cancer, lung cancer, lymphomas, and melanomas (Chadwick et al. 2000;Du et al. 2001;Poetsch et al. 2002;Sasaki et al. 2002;Oshimo et al. 2004).”
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- cites Du et al. 2001
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- Interpretationreasoning
HDACs have dualistic and opposite functions in cancer development.
“HDACs have, not unlike DNA methylation, dualistic and opposite functions in cancer development.”
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PRMT4/CARM1 positively regulates transcription of estrogen receptor-responsive genes by binding HAT CBP/p300 and methylating histone H3 Arg17.
“PRMT4/ CARM1 positively regulates transcription of, among others, estrogen receptor-responsive genes via binding to the histone acetyl transferase CPB/p300 and methylation of Arg 17 of histone H3 (Xu et al. 2001;Daujat et al. 2002).”
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- cites Daujat et al. 2002
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- Premisenone given
HDAC activity is often crucial to prepare the histone template for methyltransferases by removing acetyl groups that obstruct methylation.
“Importantly, HDAC activity is often crucial to prepare the histone template for methyltransferases by removing acetyl groups obstructing methylation.”
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Methylation of histone H4 Arg3 by PRMT1 facilitates H4 acetylation and enhances transcriptional activity.
“To this end, methylation of Arg 3 of histone H4 by PRMT1 has been found to facilitate H4 acetylation and enhance transcriptional activity (Wang et al. 2001a).”
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- Interpretationreasoning
Several SET domain proteins exist in cancer-promoting and cancer-preventing isoforms.
“An emerging central theme is that several SET domain proteins can be found in a cancer-promoting and a cancer-preventing isoform.”
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CBP and p300 are disrupted by translocations in leukemia with partners including MLL, MOZ, and MORF.
“CBP and p300 are found disrupted by translocations in leukemia with translocation partners including MLL, MOZ, and MORF (Borrow et al. 1996;Sobulo et al. 1997;Panagopoulos et al. 2001).”
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- cites Sobulo et al. 1997
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- cites Panagopoulos et al. 2001
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- Interpretationreasoning
This isoform pattern is true for RIZ and MDS-EVI1, which have two promoters producing separate isoforms with and without the SET domain.
“This is true for the RIZ and MDS-EVI1 genes, both of which contain two promoters dictating separate protein isoforms, one form holding and one form lacking the SET domain.”
Quote in the paperSubstantial claim - Interpretationcitation
CBP and p300 are functional tumor suppressors, supported by several lines of evidence.
“CBP and p300 are functional tumor suppressors as demonstrated by several lines of evidence.”
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Genetic ablation studies in mouse models confirm that Cbp and p300 function as tumor suppressors.
“Finally, genetic ablation studies of Cbp and p300 in mouse models have confirmed that both proteins function as tumor suppressors (Yao et al. 1998;Kung et al. 2000;Kang-Decker et al. 2004).”
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- cites Kung et al. 2000
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- cites Kang-Decker et al. 2004
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- Premisecitation
HDACs are associated with other epigenetic repression mechanisms, including histone methylation, PcG-mediated repression, and DNA methylation.
“Importantly, HDACs are associated with a number of other epigenetic repression mechanisms, including histone methylation (Ogawa et al. 2002;Vaute et al. 2002), PcG-mediated repression (van der Vlag and Otte 1999), and DNA methylation (Fuks et al. 2000;Rountree et al. 2000).”
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- cites Vaute et al. 2002
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- cites van der Vlag and Otte 1999
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- Premisenone given
Both HATs and HDACs have been found mutated or deregulated in various cancers.
“Both HATs and HDACs have been found mutated or deregulated in various cancers.”
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HDACs are often captured by oncoproteins such as PML-RARα or AML-ETO to induce aberrant gene silencing.
“HDACs are, moreover, often found as”
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HDACs play prominent roles in transcriptional inactivation of tumor-suppressor genes, as shown by studies using pharmacological HDAC inhibitors in cancer therapy.
“On the one hand, HDACs play prominent roles in the transcriptional inactivation of tumor-suppressor genes.This is evident from studies using pharmacological inhibitors of HDAC activity in cancer therapies (discussed following).”
Quote in the paperSubstantial claim - Premisecitation
p300 and CBP act as transcriptional cofactors for many cellular oncoproteins, including MYB, JUN, FOS, RUNX, BRCA1, p53, and pRB, and for viral oncoproteins E1A, E6, and SV40 large T.
“The two closely related HATs, p300 and CBP, act as transcriptional cofactors for a range of cellular oncoproteins, such as MYB, JUN, FOS, RUNX, BRCA1, p53, and pRB, as well as for the viral oncoproteins E1A, E6, and SV40 large T (for review, see Caron et al. 2003;Iyer et al. 2004).”
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Cell culture studies demonstrate an important role for DNMT3A in cancer cell survival.
“Likewise, cell culture studies have demonstrated an important role for DNMT3A in cancer cell survival (Beaulieu et al. 2002).”
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- Interpretationcitation
The ying-yang theory proposes that natural homeostasis between SET-domain-containing and SET-domain-lacking isoforms is perturbed in cancers, causing selective expression of the oncogenic over the tumor-suppressive isoform.
“Together, these findings have led to the ying-yang theory (Huang 2002), proposing that the natural homeostasis existing between protein isoforms with and without SET domain is perturbated in cancers, resulting in selective expression of the oncogenic over the tumor-suppressive isoform.”
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DNMT1 knockdown in human cancer cell lines demonstrates an essential role for DNMT1 in maintaining aberrant repression of tumor-suppressor loci.
“and DNMT1 knockdown experiments in human cancer cell lines have demonstrated an essential role for DNMT1 in maintaining aberrant repression of tumor-suppressor loci (Robert et al. 2003).”
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Microarray analyses have revealed that aberrant methylation patterns associated with cancer appear to be tumor-type specific.
“Interestingly, microarray analyses have re-vealed that the aberrant methylation patterns associated with cancer appears to be tumor-type specific”
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- cites Esteller et al. 2001
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Large-scale attempts are underway to link epigenetic variation such as methylation-variable positions.
“large-scale attempts to link epigenetic variation, such as methylation-variable positions, are currently being undertaken (Novik et al. 2002;Fazzari and Greally 2004”
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- cites Fazzari and Greally 2004
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In normal cells, CTCF establishes chromatin boundaries.
“In normal cells, insulator proteins such as the transcription factor CTCF establish chromatin boundaries”
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- cites Lewis and Murrell 2004
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Hypomethylation is linked to genomic instability in many cancer types, including breast and prostate cancer.
“Indeed, links between hypomethylation and genomic instability have been shown for many cancer types including breast cancer (Tsuda et al. 2002) and prostate cancer (Schulz et al. 2002).”
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- cites Schulz et al. 2002
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Mice carrying a hypomorphic Dnmt1 allele develop aggressive lymphomas with a high frequency of genomic rearrangements.
“mice carrying a hypomorph Dnmt1 allele develop aggressive lymphomas displaying a high frequency of genomic rearrangements (Gaudet et al. 2003).”
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Dnmt1-deficient embryonic stem cells show an increased frequency of chromosomal rearrangements.
“embryonic stem cells deficient for the Dnmt1 maintenance methyltransferase display an increased frequency of chromosomal rearrangements (Chen et al. 1998)”
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A decrease in global methylation can be detected before tumor formation in rats maintained on a methyl-deficient diet.
“A decrease in global methylation can be detected prior to tumor formation in rats maintained on a methyldeficient diet (Christman et al. 1993;Pogribny et al. 1997),”
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- cites Pogribny et al. 1997
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Loss of DNA methylation is linked to nutrition, as lack of S-adenosylmethione, the primary methyl donor, has been shown to predispose to cancer.
“Loss of DNA methylation has also been linked to nutrition, as lack of S-adenosylmethione, the primary methyl donor in the cell, has been shown to predispose to cancer (Huang 2002).”
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- Premisenone given
Ectopic cytosine hypermethylation is generally associated with transcriptional repression and ultimately tumor formation.
“Ectopic cytosine hypermethylation is generally associated with transcriptional repression and, ultimately, tumor formation.”
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Methylation of the CTCF recognition sequence abolishes CTCF binding.
“methylation of the CTCF recognition sequence abolishes CTCF binding (Nakagawa et al. 2001)”
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- Interpretationnone given
Heterochromatin-associated repression spreading may coincide with breakdown of higher-order chromatin structures such as boundary elements.
“Spreading of heterochromatin-associated repression may be concurrent with the breakdown of higherorder chromatin structures such as boundary elements.”
Quote in the paperNot a substantial claim - Interpretationcitation
Specific DNA methylations may have long-range consequences.
“indicating that specific DNA methylations may have long-range consequences.”
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Evidence from several model systems indicates that histone methylation imprints can direct DNA methylation.
“evidence from several model systems has demonstrated that histone methylation imprint may direct DNA methylation (Tamaru and Selker 2001;Bachman et al. 2003).”
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- cites Bachman et al. 2003
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- Premisecitation
Transcriptional silencing of tumor-suppressive genes can occur through heterochromatin spreading from nearby silenced repetitive DNA.
“Transcriptional silencing of genes with tumor-suppressive function may also occur via spreading of heterochromatin out from nearby silenced loci of repetitive DNA (Jones and Baylin 2002)”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Jones and Baylin 2002
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- Premisecitation
Aberrant DNA methylation patterns in cancer are tumor-type specific.
“that the aberrant methylation patterns associated with cancer appears to be tumor-type specific (Eads et al. 2000;Esteller et al. 2001;Adorjan et al. 2002;Paz et al. 2003).”
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- cites Esteller et al. 2001
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- cites Adorjan et al. 2002
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- Premisecitation
Hypomethylation increases expression of several known oncogenes, including CYCLIN D2, BCL2, and HRAS.
“and hypomethylation has been found to increase the expression of several known oncogenes including CYCLIN D2 (Oshimo et al. 2003), BCL2 (Hanada et al. 1993), and HRAS (Feinberg and Vogelstein 1983b).”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites Oshimo et al. 2003
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- cites Hanada et al. 1993
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- cites Feinberg and Vogelstein 1983b
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- Premisecitation
Acetylated lysines serve as binding sites for bromodomain-containing proteins such as HATs and chromatin remodeling factors, some of which participate in the transcription initiation complex.
“acetylated lysines serve as binding sites for bromodomain-containing proteins, such as HATs and chromatin remodeling factors, some of which take part in the transcription initiation complex (Dhalluin et al. 1999;Zeng and Zhou 2002;Kanno et al. 2004).”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites Dhalluin et al. 1999
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- cites Zeng and Zhou 2002
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- cites Kanno et al. 2004
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- Premisecitation
Remethylation of the p16 INK4A tumor-suppressor gene after genome-wide demethylation requires DNA replication before remethylation.
“Studies of remethylation of the p16 INK4A tumor-suppressor gene following genome-wide demethylation indicates a requirement for DNA replication prior to remethylation (Velicescu et al. 2002).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Velicescu et al. 2002
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- Premisecitation
Global demethylation results in expression of cancer and testis-specific antigens.
“On a more positive note, global demethylation results in the expression of”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites De Smet et al. 1996
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- cites Banchereau et al. 2003
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- Interpretationreasoning
Epigenetic silencing may underlie genetic cancer causes.
“By extension, epigenetic silencing may underlie genetic cancer causes.”
Quote in the paperSubstantial claim - Premisecitation
Collaboration between genetic and epigenetic cancer causes is directly demonstrated by cases where one tumor-suppressor allele is mutated and the other is silenced by hypermethylation.
“Collaboration between genetic and epigenetic cancer causes has been directly demonstrated by examples in which one tumor-suppressor allele is inactivated by mutations and the other allele is transcriptionally silenced because of hypermethylation (Myohanen et al. 1998;Grady et al. 2000).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites Myohanen et al. 1998
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- cites Grady et al. 2000
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- Premisecitation
Silencing of the DNA repair gene for O6-methylguanine-DNA methyltransferase is associated with specific mutations in K-RAS and p53.
“and silencing of the DNA repair gene coding for O6methylguanine-DNA methyltransferase has been associated with specific mutations in K-RAS (Esteller et al. 2000) and p53 (Nakamura et al. 2001).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Esteller et al. 2000
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- cites Nakamura et al. 2001
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- Premisecitation
EZH2-mediated methylation of histone H3 Lys27 links PRC2 and PRC1 complexes by serving as a binding site for the PRC1 member Pc.
“The methylation imprint set by EZH2 at Lys 27 on histone H3 mechanistically links the PRC2 and PRC1 PcG complexes, as methylated Lys 27 of histone H3 serves as a binding site for the PRC1 member Pc (Cao et al. 2002;Czermin et al. 2002;Kuzmichev et al. 2002).”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites Cao et al. 2002
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- cites Czermin et al. 2002
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- cites Kuzmichev et al. 2002
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- Premisecitation
SNF5 (INI1) has inactivating mutations in highly aggressive human malignant rhabdoid tumors.
“analyses of the SWI/SNF core subunit SNF5 (INI1) have revealed the presence of inactivating mutations in highly aggressive human malignant rhabdoid tumors (Versteege et al. 1998;Biegel et al. 1999).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites Versteege et al. 1998
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- cites Biegel et al. 1999
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- Interpretationreasoning
H2AX appears to be a bona fide epigenetic tumor suppressor mechanism.
“H2AX therefore appears to constitute a bona fide epigenetic tumor suppressor mechanism.”
Quote in the paperSubstantial claim - Premisecitation
All three mammalian HP1 proteins have chromodomains capable of recognizing methylated Lys9 on histone H3.
“the three mammalian HP1 members all hold chromodomains capable of recognizing the methylated Lys 9 on histone H3 (Bannister et al. 2001;Lachner et al. 2001)”
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- cites Lachner et al. 2001
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- Premisecitation
Compensatory mechanisms can partly substitute for HP1 function, as demonstrated in mouse ES cells deficient for both Suv39 homologs.
“Such compensatory mecha-nisms were demonstrated recently in mouse ES cells deficient for both Suv39 homologs (Peters et al. 2003).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Peters et al. 2003
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- Premisecitation
Bmi1 is indispensable for maintenance of hematopoietic and leukemic stem cells.
“Bmi1 proved indispensable for the maintenance of hematopoietic and leukemic stem cells (Lessard and Sauvageau 2003;Park et al. 2003)”
Quote in the paperSubstantial claim0 of 2 sources checked- cites Lessard and Sauvageau 2003
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- cites Park et al. 2003
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- Interpretationreasoning
Ample evidence connects PcG-mediated epigenetic repression to cancer development.
“Hence, ample evidence exists connecting PcG-mediated epigenetic repression to cancer development.”
Quote in the paperSubstantial claim - Interpretationreasoning
No firm cancer connections have been established for any methyl-binding protein.
“perhaps surprisingly, no firm cancer connections have been established for any of the methylbinding proteins.”
Quote in the paperNot a substantial claim - Premisecitation
Mouse models demonstrate that Snf5 is a haploinsufficient tumor-suppressor gene.
“mouse models demonstrating Snf5 as a haploinsufficient tumor-suppressor gene (Klochendler-Yeivin et al. 2000;Roberts et al. 2000)”
Quote in the paperSubstantial claim0 of 2 sources checked- cites Klochendler-Yeivin et al. 2000
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- cites Roberts et al. 2000
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- Premisecitation
Nucleosome remodeling complexes modify chromatin topology ATP-dependently by disrupting DNA:histone interactions, facilitating nucleosome sliding and DNA accessibility.
“Nucleosome remodeling complexes modify chromatin topology in an ATP-dependent manner by disrupting DNA:histone interactions, thereby facilitating sliding of the nucleosome, and hence the accessibility of the DNA to transcription factors (Becker and Horz 2002).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Becker and Horz 2002
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- Premisecitation
Methyl-DNA-binding proteins are associated with aberrantly methylated promoter regions of cancer-relevant genes such as p16CDKN2A and MGMT.
“methyl-DNA-binding proteins have been found associated with aberrantly methylated promoter regions of cancer-relevant genes such as p16CDKN2A (Nguyen et al. 2001) and MGMT (Nakagawachi et al. 2003).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Nguyen et al. 2001
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- cites Nakagawachi et al. 2003
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- Premisecitation
Mutation analysis of human lung and colon cancers revealed few changes in MBD1 or MBD2, indicating a limited role for these proteins in cancer.
“mutation analysis from human lung and colon cancers revealed few changes in MBD1 or MBD2, indicating a limited role for these proteins in cancer (Bader et al. 2003).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Bader et al. 2003
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- Premisecitation
Loss of Mbd2 significantly delays tumorigenesis in Apc min mice.
“when bred onto a bona fide model for intestinal cancer, the Apc min mouse, loss of Mbd2 significantly delays tumorigenesis (Sansom et al. 2003).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Sansom et al. 2003
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- Interpretationreasoning
Functional inactivation of SWI/SNF impinges on multiple cellular growth control pathways.
“hence, functional inactivation of SWI/SNF impinges on a multitude of cellular growth control pathways (for a recent review, see Roberts and Orkin 2004).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Roberts and Orkin 2004
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- Interpretationreasoning
Differences in subnuclear localization of HP1 proteins indicate additional mechanisms for localizing and tethering them.
“the differences in subnuclear localizations point to the presence of additional mechanisms for localizing and tethering HP1 proteins.”
Quote in the paperNot a substantial claim - Premisecitation
Bmi1 is overexpressed in human tumors.
“Bmi1 is the most extensively studied PRC1 member, which has been found to be overexpressed in human tumors (Bea et al. 2001;Vonlanthen et al. 2001;Leung et al. 2004).”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites Bea et al. 2001
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- cites Vonlanthen et al. 2001
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- cites Leung et al. 2004
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- Premisecitation
Bmi1 exerts oncogenic effects by down-regulating the CDK inhibitors p16 ink4a and p19 Arf, affecting both the pRB and p53 pathways.
“Bmi1 was subsequently demonstrated to exert oncogenic effects through down-regulation of the CDK inhibitors p16 ink4a and p19 Arf , thereby impinging on both the pRB and the p53 pathways (Jacobs et al. 1999a,b).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Jacobs et al. 1999a,b
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- Premisecitation
In cell culture models, BMI1 regulates replicative senescence in human fibroblasts and mammary epithelial cells via repression of p16 and indirectly via induction of hTert.
“In cell culture models, BMI1 regulates replicative senescence in human fibroblasts and mammary epithelial cells via repression of p16 and indirectly via induction of hTert (Dimri et al. 2002;Itahana et al. 2003).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Dimri et al. 2002
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- cites Itahana et al. 2003
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- Interpretationreasoning
Epigenetic mechanisms are significant for gene regulation in cancer.
“The significance of epigenetic mechanisms for gene regulation in cancer is now evident”
Quote in the paperSubstantial claim - Premisecitation
SWI/SNF interacts with many cancer-related protein complexes such as RB, p53, MYC, MLL, BRCA1, and β-catenin.
“SWI/SNF interacts with many protein complexes central to cancer development, such as RB, p53, MYC, MLL, BRCA1, and -catenin”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Roberts and Orkin 2004
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- Premisecitation
MeCP2, MBD2, and MBD4 are down-regulated in human cancers.
“Although MeCP2, MBD2, and MBD4 have been found down-regulated in human cancers (Zhu et al. 2004b)”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Zhu et al. 2004b
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- Interpretationreasoning
A drug that targets multiple genes is likely to affect numerous unintended genes.
“many”
Quote in the paperNot a substantial claim - Premisecitation
MBD2 knockdown in human cancer cell lines suppresses tumorigenesis in a mouse xenograft model.
“MBD2 knockdown in human cancer cell lines was found to suppress tumorigenesis in a mouse xenograft model (Ivanov et al. 2003;Campbell et al. 2004).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Ivanov et al. 2003
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- cites Campbell et al. 2004
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- Premisecitation
Bmi1 is indispensable for maintenance of neuronal stem cell populations.
“and neuronal stem cell populations (Molofsky et al. 2003;Leung et al. 2004).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Molofsky et al. 2003
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- cites Leung et al. 2004
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- Interpretationreasoning
Research on epigenetic imprints remains at an early stage.
“The study of epigenetic imprints is still in its infancy”
Quote in the paperSubstantial claim- Rests on an assumption: Not all epigenetic marks are known.
- Rests on an assumption: Only few of the known epigenetic marks are understood in any detail.
- Premisenone given
Cancer-related mechanisms act at all epigenetic layers.
“cancer-related mechanisms acting at all epilayers”
Quote in the paperNot a substantial claim - Premisecitation
Analyses of yeast SWI/SNF mutants revealed that transcription of about 5% of all yeast genes is influenced by SWI/SNF mutations.
“analyses of yeast SWI/SNF mutants revealed that transcription of ∼5% of all yeast genes is influenced by SWI/ SNF mutations (Sudarsanam et al. 2000).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Sudarsanam et al. 2000
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- May combine two claims. 70
- Classified as probably not a substantial claim. 19
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Interpretationreasoning§ REVIEW Epigenetics and cancerBecause epigenetic codes can potentially be reversed, unlike genetic causes, they offer new therapeutic targets.
“In contrast to genetic cancer causes, the possibility of reversing epigenetic codes may provide new targets for therapeutic intervention.”
Quote in the paperSubstantial claim- Rests on an assumption: Epigenetic changes that contribute to cancer can be reversed pharmacologically to produce therapeutic benefit.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Premisenone givenVariant histone proteins exist and can be inserted into nucleosomes, possibly serving as landmarks for specific cellular functions.
“Aside from the core histones, a variety of variant histone proteins exist and can be inserted into the nucleosome, possibly serving as landmarks for specific cellular functions (discussed following).”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationAlthough PRC2 members are directly controlled by the RB tumor-suppressor pathway, their expression levels do not appear to fluctuate in a cell cycle-dependent manner.
“Surprisingly, although PRC2 complex members are directly controlled by the RB tumor-suppressor pathway, their expression levels do not appear to fluctuate in a cell cycle-dependent manner (Weinmann et al. 2001;Bracken et al. 2003).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites Weinmann et al. 2001
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- cites Bracken et al. 2003
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PremisecitationHistone modifications influence one another; for example, phosphorylation of histone H3 Ser10 facilitates acetylation of Lys14 and methylation of Lys4, producing open chromatin.
“This is exemplified in gene activation where phosphorylation of histone H3 Ser 10 facilitates acetylation of Lys 14 and methylation of Lys 4, resulting in an open chromatin conformation (Cheung et al. 2000;Lo et al. 2000).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Cheung et al. 2000
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- cites Lo et al. 2000
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PremisecitationThe pattern of histone modifications indicates local chromatin status and is called the histone code.
“The pattern of histone modifications signifies the status of the chromatin locally and has been coined the histone code (Strahl and Allis 2000).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Strahl and Allis 2000
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Premisecitation§ REVIEW Epigenetics and cancerEpigenetic programming is essential in mammalian development, and stable inheritance of epigenetic settings is needed for tissue- and cell-type-specific functions.
“Epigenetic programming is crucial in mammalian development, and stable inheritance of epigenetic settings is essential for the maintenance of tissue-and cell-typespecific functions (Li 2002).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Li 2002
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InterpretationreasoningThese PRC2 functions indicate long-range transcriptional repression and suggest PRC2 activity may have global cellular consequences, perhaps by skewing the balance between specific histone methylation imprints.
“These functions point to long-range mechanisms of transcriptional repression and suggest that PRC2 activity may have global consequences to the cell, perhaps via more generally skewing the balance between specific histone methylation imprints.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisereasoningHistone methylations can serve as anchorage points for both activator and repressor complexes and thereby contribute to epigenetic inheritance carrying information about differentiation commitment and function.
“histone methylations can serve as anchorage points for both activator and repressor complexes and are thereby involved in conferring an epigenetic inheritance to the cell, carrying information related to differentiation commitment and function.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationThe nucleosome consists of about two turns of DNA wrapped around a histone octamer containing two copies each of H2A, H2B, H3, and H4; linker histone H1 attaches between core nucleosomes and promotes compaction.
“The nucleosome is made up of approximately two turns of DNA wrapped around a histone octamer built from two subunits of each histone, H2A, H2B, H3, and H4, respectively, In between core nucleosomes, the linker histone H1 attaches and facilitates further compaction (for a recent review, see Khorasanizadeh 2004).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Khorasanizadeh 2004
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Premisenone givenPcG proteins form transcriptional repressor modules divided into at least two complexes: PRC2, whose human core is EZH2, EED, and SUZ12, and PRC1, whose core proteins are RNF2, HPC, EDR, and BMI1.
“Polycomb-group (PcG) proteins form transcriptional repressor modules that functionally can be divided into at least two distinct complexes: the initiation complex, Polycomb repression complex 2 (PRC2), the core of which in humans consists of EZH2, EED, and SUZ12; and the maintenance complex, PRC1, with the core proteins RNF2, HPC, EDR, and BMI1.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
Premisenone givenHistone acetylation generally correlates with transcriptional activity.
“Al-though histone acetylation in general correlates with transcriptional activity,”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationcitationExperimental overexpression of EZH2 results in target gene suppression only, which does not support dominant-negative effects on PRC2.
“however, experimental overexpression of EZH2 results in target gene suppression only (Varambally et al. 2002), and hence does not sustain a notion of dominant negative effects.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Varambally et al. 2002
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InterpretationcitationThe overexpression of EZH2 in cancers is likely causally related to tumorigenesis rather than a mere consequence of deregulated RB-E2F function, because the EZH2 locus is amplified in several cancers.
“and the observed overexpression of EZH2 in cancers is likely causally related to tumorigenesis and not a mere consequence of deregulated RB-E2F functioning, as the EZH2 locus is amplified in several cancers (Bracken et al. 2003).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Bracken et al. 2003
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PremisereasoningMost histone modifications are reversible, but no histone demethylase had been identified at the time, suggesting histone methylation participates in long-term regulation.
“Although most histone modifications are reversible, no histone demethylase has been identified as yet, suggesting histone methylation to be involved in processes of long-term regulation.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Premisenone givenThe N-terminal tails of histones protrude from nucleosomal core particles and act as regulatory registers for epigenetic signals.
“The N-terminal tails of the histone proteins are protruding out from the nucleosomal core particles, and these tails serve as regulatory registers onto which epigenetic signals can be written.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationThe SET domain in EZH2 methylates histone H3 at Lys9 and more prominently Lys27, and histone H1 at Lys26.
“Recent data have demonstrated that the SET domain present in EZH2 is responsible for methylation of Lys 9 and, more prominently, Lys 27 of histone H3 (Cao et al. 2002;Czermin et al. 2002;Kuzmichev et al. 2002;Muller et al. 2002) and Lys 26 on histone H1 (Kuzmichev et al. 2004).”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites Cao et al. 2002
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- cites Czermin et al. 2002
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- cites Kuzmichev et al. 2004
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InterpretationreasoningDNA methylation and histone modifications affect each other, forming a highly intricate epigenetic control mechanism.
“Also DNA methylation affects histone modifications and vice versa, to make up a highly intricate epigenetic control mechanism, the impact of which we have only just begun to comprehend.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Premisenone givenMembers of both PcG and TrxG complexes contain SET domains.
“Members of both PcG and TrxG protein complexes harbor SET domains.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationPRC2 is required for X-chromosome inactivation and for correct imprinting of autosomal loci.
“The PRC2 complex is also required for X-chromosome inactivation (Plath et al. 2003;Silva et al. 2003) and for correct imprinting of autosomal loci (Wang et al. 2001b).”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites Plath et al. 2003
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- cites Silva et al. 2003
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- cites Wang et al. 2001b
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Premisenone givenCovalent histone modifications include acetylation of lysines, methylation of lysines and arginines, phosphorylation of serines and threonines, ADP-ribosylation of glutamic acids, and ubiquitination and sumoylation of lysines.
“Covalent modification of histones includes acetylation of lysines, methylation of lysines and arginines, phosphorylations of serines and threonines, ADP-ribosylation of glutamic acids, and ubiquitination and sumolyation of lysine residues (Fig. 1).”
Quote in the paperNot a substantial claimMay combine two claims.
Premisenone givenHistone proteins can be mono-, di-, or trimethylated at lysine residues and mono- or dimethylated at arginine residues.
“Histone proteins can be mono-, di-, or trimethylated at the amino group of lysine residues and either mono-or dimethylated at arginine residues.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Interpretationnone givenThe causal role of EZH2 overexpression in tumorigenesis remains to be confirmed in mouse models.
“This, however, remains to be confirmed in mouse models.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationSMYD3 interacts with the RNA polymerase II complex and activates target genes by methylating histone H3 Lys4.
“SMYD3 was found to interact with the RNA polymerase II complex and activate target genes via methylation of histone H3 Lys 4.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationEvi1 was characterized in mouse as a cancer-related retroviral integration site in myeloid leukemia, and EVI1 was later identified as a translocation breakpoint in humans.
“Evi1 was characterized in the mouse as a cancer-related retroviral integration site in myeloid leukemia (Morishita et al. 1988), and EVI1 was subsequently identified as a translocation breakpoint in hu-mans (Morishita et al. 1992).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Morishita et al. 1988
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- cites Morishita et al. 1992
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InterpretationcitationMll heterozygous mice do not appear tumor prone, making haploinsufficiency a less likely cause of leukemogenesis.
“Mll heterozygous mice do not appear tumor prone, making haploinsufficiency a less likely cause of leukemogenesis (Corral et al. 1996).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Corral et al. 1996
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PremisecitationSuv39h deficiency in mouse predominantly affects heterochromatin stability, while Suv39h methyltransferases associate with numerous cell cycle regulatory proteins including pRB, PcG proteins, and SMADs.
“Whereas Suv39h deficiency in the mouse predominantly was found to affect heterochromatin stability, the Suv39h methyltransferases associate with numerous proteins involved in cell cycle regulation including pRB (Nielsen et al. 2001;Vandel et al. 2001), PcG-proteins (Sewalt et al. 2002), and SMADs (Frontelo et al. 2004).”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites Nielsen et al. 2001
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- cites Vandel et al. 2001
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- cites Sewalt et al. 2002
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PremisecitationSUV39H1 is the mammalian homolog of Drosophila Su(var)3-9 and was the first SET domain protein recognized as a histone methyltransferase.
“SUV39H1 is the mammalian homolog of the Drosophila position effect variegation modifier Su(var)3-9 and was the first SET domain protein to be recognized as a histone methyl transferase (Rea et al. 2000).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Rea et al. 2000
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PremisecitationThe Ash1-specific methylation imprint displaces HP1 and PcG proteins from repressed genes and facilitates binding of the Brahma chromatin remodeling complex.
“The Ash1-specific methylation imprint was found to displace HP1 and PcG proteins, which are normally bound to repressed genes, and instead facilitates the binding of the Brahma chromatin remodeling complex (Beisel et al. 2002).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Beisel et al. 2002
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InterpretationreasoningThis suggests functional redundancy between different epigenetic repression mechanisms, possibly explaining why loss of Suv39h-mediated repression does not produce a stronger phenotype.
“This suggests a functional redundancy between different epigenetic gene repression mechanisms, which may serve to explain why loss of Suv39h-mediated repression does not have an even stronger phenotype.”
Quote in the paperSubstantial claimMay combine two claims.
Premisenone givenAll MLL1 fusion proteins retain the N-terminal part of MLL1 and lose the C-terminal part encoding the SET domain.
“Intriguingly, all fusion proteins retain the N-terminal part of MLL1, whereas the C-terminal part encoding the SET domain is lost.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationcitationEctopic expression of RIZ1 in cancer cell lines causes cell cycle arrest and/or apoptosis, consistent with tumor-suppressive function.
“In accordance with a tumor-suppressive function of RIZ1, ectopic expression in cancer cell lines results in cell cycle arrest and/or apoptosis (He et al. 1998;Jiang et al. 1999).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites He et al. 1998
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- cites Jiang et al. 1999
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PremisecitationRIZ1 was first isolated through its interaction with RB and was the first SET domain protein shown to be a tumor suppressor.
“RIZ1, originally isolated from its interaction with the RB tumor suppressor protein (Buyse et al. 1995), was the first SET domain protein demonstrated to be a tumor suppressor (Steele-Perkins et al. 2001).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Buyse et al. 1995
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- cites Steele-Perkins et al. 2001
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PremisecitationMice deficient for the two Suv39 homologs show chromosomal instability and are prone to B-cell lymphomas resembling human non-Hodgkin lymphomas, with long latency.
“Mice deficient for the two Suv39 homologs display chromosomal instability and are prone to develop B-cell lymphomas resembling human non-Hodgkin lymphomas, albeit with long latency (Peters et al. 2001).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Peters et al. 2001
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PremisecitationIn ES cells lacking both Suv39 homologs, pericentromeric heterochromatin lacks the characteristic H3 Lys9 trimethylation and instead accumulates monomethylated Lys9 and trimethylated Lys27.
“In embryonic stem (ES) cells lacking both Suv39 homologs the pericentromeric heterochromatin is devoid of the characteristic trimethylation of histone H3, Lys 9. Instead, an alternative methylation imprint consisting of monomethylated Lys 9 and trimethylated Lys 27 has accumulated (Peters et al. 2003).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Peters et al. 2003
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Premisenone givenThe 5' MDS part of MDS-EVI1 contains a SET domain, and both mouse retroviral integrations and human translocations cause selective overexpression of the EVI1 variant lacking the SET domain.
“The 5Ј MDS part of MDS-EVI1 contains a SET domain, and both retroviral integrations in the mouse and translocations in humans result in the selective overexpression of the EVI1 variant lacking a SET domain.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationSMYD3 is a SET and MYND domain-containing protein overexpressed in colorectal and hepatocellular carcinomas.
“SMYD3 was recently identified as a SET and MYND domain-containing protein overexpressed in colorectal carcinomas and hepatocellular carcinomas (Hamamoto et al. 2004).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Hamamoto et al. 2004
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PremisecitationOnly RIZ1 contains a SET domain and appears to be the main target of inactivation in tumors.
“Interestingly, only RIZ1 harbors a SET domain and appears to be the main target of inactivation in tumors (Huang 2002),”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Huang 2002
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PremisecitationOverexpression of SMYD3 results in colony formation of NIH 3T3 cells, but its oncogenic capacity has not been confirmed in vivo.
“Whereas the oncogenic capacity of SMYD3 is yet to be confirmed in an in vivo model, overexpression of SMYD3 results in colony formation of NIH 3T3 cells.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationReduced histone H3 methylation from loss of Suv39h decreases HP1 association with telomeres and causes abnormal telomere elongation.
“The reduced histone H3 methylation resulting from loss of Suv39h caused a decrease in HP1 association to the telomeres and abnormal telomere elongation (Garcia- Cao et al. 2004).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Garcia-Cao et al. 2004
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PremisecitationMore than 40 specific translocations involving MLL1 have been described in human cancers.
“More than 40 specific translocations involving MLL1 have been described in human cancers to date (Ayton and Cleary 2001).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Ayton and Cleary 2001
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Premisenone givenThe MYND domain appears to confer sequence-specific binding to target genes.
“Interestingly, the MYND domain appears to confer sequence-specific binding to target genes.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationcitationRNAi-mediated knockdown of HDAC2 in colonic cancer cells causes cell death, indicating HDAC2 protects cancer cells against apoptosis.
“Likewise, RNAi-mediated knockdown of HDAC2 in colonic cancer cells resulted in cell death, indicating a role for HDAC2 in protecting cancer cells against apoptosis (Zhu et al. 2004a).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Zhu et al. 2004a
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Premisenone givenMany transcriptional regulators, chromatin modifiers, and intracellular signal transducers are posttranslationally modified by acetylation.
“Aside from histones, many transcriptional regulators, chromatin modifiers, and intracellular signal transducers are posttranslationally modified by acetylation.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationDnmt1 is necessary and sufficient for Fos-induced transformation of mouse fibroblast cells.
“Dnmt1 was shown to be necessary and sufficient for Fos-induced transformation of mouse fibroblast cells (Bakin and Curran 1999),”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Bakin and Curran 1999
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PremisecitationImportant tumor-suppressor mechanisms depend on HDAC function, as RB requires HDAC1 for transcriptional repression of E2F target genes.
“On the other hand is the reliance of important tumorsuppressor mechanisms on HDAC function, as exemplified by the dependency of RB on HDAC1 for transcriptional repression of E2F target genes (Luo et al. 1998;Magnaghi-Jaulin et al. 1998;Robertson et al. 2000).”
Quote in the paperSubstantial claim0 of 3 sources checked- cites Luo et al. 1998
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- cites Robertson et al. 2000
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InterpretationcitationDNA methylation is tightly connected to cancer development and can act as a double-edged sword.
“DNA methylation is tightly connected to cancer development and can act as a double-edged sword.”
Quote in the paperSubstantial claimMay combine two claims.
Premisenone givenDNMT1 associates with the DNA replication fork and acts as a hemi-methylase maintaining correct methylation patterns during DNA replication.
“DNMT1 associates with the DNA replication fork and functions as a hemi-methylase responsible for maintaining correct methylation patterns on DNA replication.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationAll three methyltransferase enzymes are overexpressed in human tumors, although only to moderate levels.
“All three methyltransferase enzymes have been found to be overexpressed in human tumors, although to moderate levels only (De Marzo et al. 1999;Robertson et al. 1999;Girault et al. 2003;Nagai et al. 2003).”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites De Marzo et al. 1999
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- cites Robertson et al. 1999
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- cites Girault et al. 2003
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PremisecitationCpG islands are most often associated with promoter regions, and an estimated 60% of human genes contain a CpG island.
“CpG islands are most often associated with promoter regions and an estimated 60% of human genes contain a CpG island (Antequera and Bird 1993).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Antequera and Bird 1993
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PremisecitationGerm-line mutations in DNMT3B underlie ICF syndrome, a rare disorder characterized by immunodeficiency, centromeric instability, and facial abnormalities.
“Germ-line mutations in DNMT3B underlies ICF syndrome, a rare disorder characterized by immunodeficiency, centromeric instability, and facial abnormalities (Hansen et al. 1999;Xu et al. 1999).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Hansen et al. 1999
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- cites Xu et al. 1999
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PremisecitationHdac1-deficient mice are not viable, and ES cells with homozygous Hdac1 deletion show proliferation defects correlated with increased p21 and p27, demonstrating HDAC1 involvement in cell cycle regulation.
“Hdac1-deficient mice are not viable and ES cells with homozygous Hdac1 deletion display proliferation defects correlating with increased levels of the cyclin-dependent kinase inhibitors p21 and p27 (Lagger et al. 2002), demonstrating the involvement of HDAC1 in cell cycle regulation.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Lagger et al. 2002
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PremisecitationGerm-line mutations in CBP cause Rubenstein-Taybi syndrome, and these patients have increased cancer risk.
“Germ-line mutations in CBP causes the developmental disorder Rubenstein-Taybi syndrome, and these patients suffer an increased cancer risk (Petrij et al. 1995;Murata et al. 2001).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites Petrij et al. 1995
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- cites Murata et al. 2001
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Premisenone givenNo arginine-specific methyltransferases have been implicated in cancer development yet, but several are involved in gene regulatory complexes important for cell cycle regulation.
“Although no arginine-specific methyltransferases have been implicated in cancer development yet, several of these enzymes are involved in gene regulatory complexes important for cell cycle regulation.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationPRMT5 associates with and negatively regulates the cyclin E promoter.
“PRMT5 was furthermore found to associate with and negatively regulate the cyclin E promoter (Fabbrizio et al. 2002).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Fabbrizio et al. 2002
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PremisecitationDNA methylation patterns are established during early embryogenesis through the interplay of at least three active DNA methyltransferases, DNMT1, DNMT3A, and DNMT3B, and targeted deletions in mouse show these enzymes are essential for normal development.
“Patterns of DNA methylation are laid out during early embryogenesis via the interplay of at least three active DNA methyltransferases, DNMT1, DNMT3A, and DNMT3B, and targeted deletions of these genes in the mouse have demonstrated that the enzymes are essential for normal development (Li et al. 1992;Okano et al. 1999).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Li et al. 1992
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PremisecitationMethylation at the C-5 position of cytosine in CpG dinucleotides by DNMTs evolved relatively late and is generally considered to facilitate static long-term gene silencing and confer genome stability by repressing transposons and repetitive DNA.
“Methylation at the C-5 position of cytosine residues present in CpG dinucleotides by DNMTs has evolved relatively late in evolution and is generally considered to facilitate static long-term gene silencing and to confer genome stability through repression of transposons and repetitive DNA elements (Yoder et al. 1997).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Yoder et al. 1997
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PremisecitationHdac2 is genetically linked to the Wnt pathway, as Hdac2 is overexpressed in tumors and tissues from mice lacking the APC tumor suppressor.
“Recently, Hdac2 was genetically linked to the Wnt pathway, as Hdac2 is overexpressed in tumors and tissues from mice lacking the adenomatosis polyposis coli (APC) tumor suppressor (Zhu et al. 2004a).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Zhu et al. 2004a
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PremisecitationPRMT5 can methylate histone H3 and H4 in vitro and interacts directly with SWI/SNF components.
“The PRMT5 arginine methyltransferase can methylate both histone H3 and H4 in vitro and interacts directly with components of the SWI/SNF complex (Pal et al. 2003).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Pal et al. 2003
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InterpretationcitationMouse embryo fibroblasts deficient for Dnmt3b are resistant to transformation by SV40 large T and activated Ras oncogenes, demonstrating that epigenetic and genetic mechanisms likely act together during cellular transformation.
“Interestingly, mouse embryo fibroblasts deficient for Dnmt3b are resistant to transformation by SV40 largeT and activated Ras oncogenes (Soejima et al. 2003), demonstrating that epigenetic and genetic mechanisms likely act in concert during cellular transformation.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Soejima et al. 2003
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PremisecitationOncogenesis is promoted by local hypermethylation of tumor-suppressor genes, while global genomic hypomethylation affects oncogene expression and genomic stability.
“On the one hand, oncogenesis is promoted by local hypermethylation of tumor-suppressor genes, whereas global genomic hypomethylation, on the other hand, affects oncogene expression and genomic stability (Jones and Baylin 2002).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Jones and Baylin 2002
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PremisecitationAcetylation of histone proteins correlates with transcriptional activation, and a dynamic equilibrium of histone acetylation is governed by opposing HATs and HDACs.
“Acetylation of histone proteins correlates with transcriptional activation and a dynamic equilibrium of histone acetylation is governed by the opposing actions of HATs and histone deacetylases (HDACs) (for recent reviews, see Marks et al. 2001;Yang 2004).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Marks et al. 2001
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- cites Yang 2004
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PremisecitationCpG dinucleotides are statistically underrepresented in the genome, likely because cytosine methylation makes them more susceptible to deamination, but are locally enriched in CpG islands.
“CpG dinucleotides are statistically underrepresented in the genome, likely because methylation of cytosine makes them more susceptible to deamination, but are locally enriched in shorter stretches of DNA (0.5 to several kilobases) known as CpG islands (Bird 2002).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Bird 2002
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PremisecitationBoth CBP and p300 genes reside in regions frequently lost in tumors, and cancer-specific mutations abolishing p300 enzymatic activity have been identified.
“Both genes reside in regions frequently lost in tumors, and cancerspecific mutations abolishing the enzymatic activity of p300 have been identified (Muraoka et al. 1996;Gayther et al. 2000;Ozdag et al. 2002).”
Quote in the paperSubstantial claim0 of 3 sources checked- cites Muraoka et al. 1996
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- cites Gayther et al. 2000
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- cites Ozdag et al. 2002
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PremisecitationRegulatory regions of many genes, including tumor suppressors, contain repetitive sequence islands, some of which influence transcription.
“the regulatory regions of many genes (including known tumor suppressors) contain islands of repetitive sequences, some of which have been shown to influence transcriptional regulation (Jordan et al. 2003;Kelly 2003).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Jordan et al. 2003
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- cites Kelly 2003
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PremisecitationLoss of IGF2 imprinting was suggested as a predictive marker for colorectal cancer.
“Loss of imprinting of the IGF2 gene was recently suggested as a predictive marker for colorectal cancer (Cui et al. 2003).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Cui et al. 2003
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PremisecitationCTCF is involved in imprinting and is required to protect against de novo methylation.
“CTCF is involved in the regulation of imprinting, where it is required to protect against de novo methylation (Fedoriw et al. 2004;Lewis and Murrell 2004).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Fedoriw et al. 2004
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- cites Lewis and Murrell 2004
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InterpretationcitationHypermethylation of tumor-suppressor genes may be an early event in cancer development, suggesting epigenetic and mutational causes may collaborate from an early time point.
“Also, hypermethylation of tumor-suppressor genes may be an early event in cancer development (Waki et al. 2003;Lee et al. 2004;Suter et al. 2004), suggesting that epigenetic and mutational cancer causes may collaborate from an early time point in disease progression.”
Quote in the paperSubstantial claim0 of 3 sources checked- cites Waki et al. 2003
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- cites Lee et al. 2004
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- cites Suter et al. 2004
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PremisecitationDNMTs may preferentially bind damaged or mismatched DNA.
“it has been suggested that DNMTs may preferentially bind to damaged or mismatched DNA (James et al. 2003).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites James et al. 2003
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PremisecitationEpigenetic induction of a classical mutator phenotype through transcriptional inactivation of MLH1 has been proposed to account for microsatellite instability in colorectal cancers.
“Epigenetic induction of a classical mutator phenotype via transcriptional inactivation of the DNA mismatch repair gene MLH1 has been proposed to account for microsatellite instability in colorectal cancers (Kane et al. 1997;Herman et al. 1998;Toyota et al. 1999a,b),”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites Kane et al. 1997
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- cites Herman et al. 1998
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- cites Toyota et al. 1999a,b
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PremisecitationIn contrast to hypermethylation of tumor-suppressor genes, tumor cells globally display overall hypomethylation of DNA, and hypomethylation was the first epigenetic mechanism linked to cancer development.
“In contrast to hypermethylation of tumor-suppressor genes, tumor cells globally display an overall hypomethylation of DNA (Feinberg and Vogelstein 1983a;Goelz et al. 1985) and hypomethylation was the first epigenetic mechanism to be linked to cancer development (Feinberg and Tycko 2004).”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites Feinberg and Vogelstein 1983a
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- cites Goelz et al. 1985
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- cites Feinberg and Tycko 2004
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InterpretationcitationGlobal genomic demethylation appears to progress with age in a tissue-dependent manner and may partly explain the higher cancer incidence among the elderly.
“Global genomic demethylation appears to progress with age in a tissue-dependent manner (Richardson 2003) and may in part explain the higher incidence of cancer among the elderly.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Richardson 2003
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PremisecitationGenomic hypomethylation can cause genomic instability, likely because demethylation predisposes to DNA strand breakage and recombination within derepressed repetitive sequences.
“Genomic hypomethylation may furthermore cause genomic instability, presumably because demethylation predisposes to DNA strand breakage and recombination within derepressed repetitive sequences (for review, see Ehrlich 2002).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Ehrlich 2002
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PremisecitationBRG1/BRM expression is lost in 10% of primary lung tumors and correlates with poor prognostic outcome.
“BRG1/BRM expression was found lost in 10% of primary lung tumors correlating with a poor prognostic outcome (Reisman et al. 2003).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Reisman et al. 2003
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Premisenone givenNoncoding antisense RNA drives DNA methylation.
“Noncoding antisense RNA driving DNA methylation”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationH2AX marks DNA double-strand breaks, and H2AX-deficient cells have increased genomic instability and impaired formation of radiation-induced foci of DNA repair proteins such as BRCA1.
“The H2A variant H2AX marks DNA double-strand breaks, and H2AX-deficient cells have increased genomic instability and impaired forma-tion of radiation-induced foci of DNA repair proteins such as BRCA1 (Bassing et al. 2002;Celeste et al. 2002).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites Bassing et al. 2002
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- cites Celeste et al. 2002
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Premisenone givenDNA methylation drives histone modification.
“DNA methylation driving histone modification”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationIn mammals and flies, HP1 acts dose-dependently: heterozygotes show partial loss of gene silencing and overexpression increases silencing.
“In both mammals and flies, HP1 acts in a dosage-dependent manner with heterozygotes displaying a partial loss of gene silencing and HP1 overexpression resulting in an increase in silencing (Eissenberg et al. 1992;Festenstein et al. 1999).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Eissenberg et al. 1992
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- cites Festenstein et al. 1999
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Premisenone givenHistone modification directs DNA methylation.
“Histone modification directing DNA methylation”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationIn mammals, HP1α and HP1β localize to pericentric heterochromatin and minor euchromatic sites, while HP1γ localizes predominantly to euchromatin.
“HP1␣ and HP1 localize to pericentric heterochromatin and minor sites within euchromatin, whereas HP1␥ localizes predominantly to euchromatic regions (Eissenberg and Elgin 2000).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Eissenberg and Elgin 2000
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InterpretationcitationThese studies place Bmi1 and epigenetic gene regulation central to the tumor stem cell concept, in which cells escape growth control and activate a stem cell-like self-renewal program.
“These studies place Bmi1, and thereby epigenetic gene regulation, central to the emerging concept of tumor stem cells, which aside from having escaped cellular growth control mechanisms such as the p53 and the pRB pathways, also have (re)instigated a stem cell-like transcription program that allows for continuous self-renewal (Pardal et al. 2003;Valk-Lingbeek et al. 2004).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites Pardal et al. 2003
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- cites Valk-Lingbeek et al. 2004
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PremisecitationCENP-A is overexpressed and mislocalized in primary human colorectal tumors, suggesting a link between CENP-A deregulation and aneuploidy.
“CENP-A was recently found to be overexpressed and mislocalized in primary human colorectal tumors, suggesting a link between CENP-A deregulation and aneuploidy (Tomonaga et al. 2003).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Tomonaga et al. 2003
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PremisecitationHP1α expression is down-regulated in invasive human breast cancer cells, and overexpression of HP1α diminishes invasive potential.
“the expression of HP1␣ is reportedly down-regulated in invasive human breast cancer cells, and overexpression of HP1␣ results in diminished invasive potential (Kirschmann et al. 2000).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Kirschmann et al. 2000
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PremisecitationLoss of Suv39h in mice displaces HP1 proteins from pericentromeric heterochromatin, resulting in aneuploidy and cancer.
“Loss of Suv39h in mice results in the displacement of HP1 proteins from pericentromeric heterochromatin, resulting in anaploidy and cancer (Peters et al. 2001).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Peters et al. 2001
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The paper relies on this without support.
Epigenetic changes that contribute to cancer can be reversed pharmacologically to produce therapeutic benefit.
“In contrast to genetic cancer causes, the possibility of reversing epigenetic codes may provide new targets for therapeutic intervention.”
The paper relies on this without support.
Understanding the molecular details of epigenetic cancer mechanisms will translate into new drug development strategies.
“Understanding the molecular details behind”
The paper relies on this without support.
Findings from model organisms and cell lines are informative about human cancer epigenetics.
“Mouse models have further validated a role for genomic hypomethylation in tumor formation”
The paper relies on this without support.
Epigenetic alterations observed in cancer cell lines and xenografts reflect primary human tumor biology.
“MBD2 knockdown in human cancer cell lines was found to suppress tumorigenesis in a mouse xenograft model”
The authors state this as an assumption.
Reversal of epigenetic silencing will reinstate cellular cancer defense mechanisms.
“The fundamental principle behind this type of epigenetic therapy is that reversal of epigenetic silencing will reinstate cellular cancer defense mechanisms”
The paper relies on this without support.
There is limited knowledge about possible adverse effects in patients.
“relatively little is known about potential side effects in patients”
The paper relies on this without support.
Not all epigenetic marks are known.
“not all epigenetic marks are known”
The paper relies on this without support.
Only few of the known epigenetic marks are understood in any detail.
“only few of the known ones are understood in any detail”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Chromatin remodelling and DNA methylation are linked to tumorigenesis.
“Both chromatin remodelling and DNA methylation have been linked to tumorigenesis119,120.”
From Cellular mechanisms of tumour suppression by the retinoblastoma gene (2008) · cites this paper as [119]
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- Authors
- Lund, A. H., & van Lohuizen, M.
- Affiliations
- The Netherlands Cancer Institute (NL)
- ORCID
- Lund, Anders H.
- Venue
- Genes & Development
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 2004-10-01
- Volume
- 18
- Issue
- 19
- Pages
- 2315-2335
- ISSN
- 0890-9369 (ISSN-L)
- 1549-5477
- OpenAlex
- W2136492640
- Semantic Scholar
- a8eac694f349babbcdf21346ba0dfed461fa4e4f
- Cited by
- 489
- References
- 290
- Citations by year
- 2026: 5 · 2025: 3 · 2024: 5 · 2023: 9 · 2022: 9 · 2021: 15 · 2020: 11 · 2019: 13 · 2018: 11 · 2017: 19 · 2016: 23 · 2015: 22 · 2014: 25 · 2013: 34 · 2012: 23
- Type
- posted content
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Genes & Development (publishedVersion)
- PubMed (publishedVersion)
- Research at the University of Copenhagen (University of Copenhagen) (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chromatin Remodeling and Cancer
- Keywords
- epigenetics, cancer, chromatin accessibility, DNA methylation, histone modifications, transcriptional regulation, tumor biology, cell cycle regulation, DNA repair, angiogenesis, cell migration, immune evasion, epigenetic therapy
- MeSH terms
- Cell Cycle, Cell Differentiation, Cell Division, DNA Repair, Gene Expression Regulation, Humans, Neoplasms, Neovascularization, Pathologic
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