The genomic landscapes of inflammation

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

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Pattern Recognition Receptors and Inflammation

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Origin and physiological roles of inflammation

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The Inflammasomes

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Histone modifications at human enhancers reflect global cell-type-specific gene expression

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Failure to Regulate TNF-Induced NF-κB and Cell Death Responses in A20-Deficient Mice

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In vivo enhancer analysis of human conserved non-coding sequences

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Liver X receptors as integrators of metabolic and inflammatory signaling

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Control of Inflammation, Cytokine Expression, and Germinal Center Formation by BCL-6

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A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap Enhancers

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IRF3 Mediates a TLR3/TLR4-Specific Antiviral Gene Program

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The BCL-6 proto-oncogene controls germinal-centre formation and Th2-type inflammation

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Human macrophage activation programs induced by bacterial pathogens

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Regulation of B lymphocyte and macrophage development by graded expression of PU.1

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An atlas of combinatorial transcriptional regulation in mouse and man

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The evolution and genetics of innate immunity

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Identification and characterization of enhancers controlling the inflammatory gene expression program in macrophages

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Control of Inducible Gene Expression by Signal-Dependent Transcriptional Elongation

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A Unifying Model for the Selective Regulation of Inducible Transcription by CpG Islands and Nucleosome Remodeling

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Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo

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Unbiased Reconstruction of a Mammalian Transcriptional Network Mediating Pathogen Responses

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Constitutive NF-kappa B activation, enhanced granulopoiesis, and neonatal lethality in I kappa B alpha-deficient mice.Preprint

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Selective and antagonistic functions of SWI/SNF and Mi-2beta nucleosome remodeling complexes during an inflammatory response.Preprint

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PU.1 induces myeloid lineage commitment in multipotent hematopoietic progenitors

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Acetylation inactivates the transcriptional repressor BCL6

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Two Waves of Nuclear Factor κb Recruitment to Target Promoters

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Selective Transcription in Response to an Inflammatory Stimulus

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BCL6

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Bcl-6 and NF-κB cistromes mediate opposing regulation of the innate immune responsePreprint

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Maintaining Cell Identity through Global Control of Genomic Organization

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BCL-6 regulates chemokine gene transcription in macrophages

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Sensors of the innate immune system: their mode of action

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The functional repertoires of metazoan genomes

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Class-specific Regulation of Pro-inflammatory Genes by MyD88 Pathways and IκBζ

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Control of NF- B-dependent Transcriptional Responses by Chromatin OrganizationPreprint

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Class-specific regulation of pro-inflammatory genes by MyD88 pathways and IκBζ.

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Plastic downregulation of the transcriptional repressor BCL6 during maturation of human dendritic cells

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Regulation of type I interferon responses

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Diversity, Mechanisms, and Significance of Macrophage Plasticity

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Microglial brain region-dependent diversity and selective regional sensitivities to aging

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Latent Enhancers Activated by Stimulation in Differentiated Cells

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Macrophage-Mediated Inflammation in Normal and Diabetic Wound Healing

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MicroRNA-155 promotes atherosclerosis by repressing Bcl6 in macrophages

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Macrophage Activation and Polarization as an Adaptive Component of Innate Immunity

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Requirement for the histone deacetylase Hdac3 for the inflammatory gene expression program in macrophages

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Epigenetic regulation of macrophage polarization and function

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Synergistic Activation of Inflammatory Cytokine Genes by Interferon-γ-Induced Chromatin Remodeling and Toll-like Receptor Signaling

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Histone deacetylase 3 is an epigenomic brake in macrophage alternative activation

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Enhancer biology and enhanceropathies

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Tumor-Associated Macrophages as a Paradigm of Macrophage Plasticity, Diversity, and Polarization

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Insights into negative regulation by the glucocorticoid receptor from genome-wide profiling of inflammatory cistromes

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Dynamic Gene Regulatory Networks Drive Hematopoietic Specification and Differentiation

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Regulatory Networks Involving STATs, IRFs, and NFκB in Inflammation

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Epigenetic impact of dietary polyphenols in cancer chemoprevention: Lifelong remodeling of our epigenomes

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Hierarchies of NF-κB target-gene regulation

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Chromatin Contributions to the Regulation of Innate Immunity

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Discrimination and systemic inflammation: A critical review and synthesis

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Inflammatory signaling in macrophages: Transitions from acute to tolerant and alternative activation states

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Emerging Principles of Gene Expression Programs and Their Regulation.

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IRF5:RelA Interaction Targets Inflammatory Genes in Macrophages

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Epigenetic Control of ImmunityPreprint

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Identification of a Dynamic Core Transcriptional Network in t(8;21) AML that Regulates Differentiation Block and Self-Renewal

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Chromatin signatures of active enhancers

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Transcription factor PU.1 represses and activates gene expression in early T cells by redirecting partner transcription factor binding

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Microglia and inflammation: conspiracy, controversy or control?

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Protein phosphatase 2A as a therapeutic target in inflammation and neurodegeneration

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The Potential Benefit of Monitoring Oxidative Stress and Inflammation in the Prevention of Non-Communicable Diseases (NCDs)

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Functional PU.1 in macrophages has a pivotal role in NF-κB activation and neutrophilic lung inflammation during endotoxemia

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IRF1 governs the differential interferon-stimulated gene responses in human monocytes and macrophages by regulating chromatin accessibility

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The Transcription Factor PU.1 is a Critical Regulator of Cellular Communication in the Immune System

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Systemic inflammation impairs respiratory chemoreflexes and plasticity

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Mechanisms of Action of Hematopoietic Transcription Factor PU.1 in Initiation of T-Cell Development

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PKCα-LSD1-NF-κB-Signaling Cascade Is Crucial for Epigenetic Control of the Inflammatory Response

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Transcription factor PU.1 and immune cell differentiation (Review)

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RANKL-responsive epigenetic mechanism reprograms macrophages into bone-resorbing osteoclasts

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Molecular features of macrophage activation

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The RUNX1–PU.1 axis in the control of hematopoiesis

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MicroRNA and mRNA expression profile screening in multiple sclerosis patients to unravel novel pathogenic steps and identify potential biomarkers

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Transcriptional and epigenetic networks of helper T and innate lymphoid cells

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Epigenetic Regulation of Inflammatory Cytokine-Induced Epithelial-To-Mesenchymal Cell Transition and Cancer Stem Cell Generation

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Chronic Fetal Exposure to Ureaplasma parvum Suppresses Innate Immune Responses in Sheep

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Pioneering, chromatin remodeling, and epigenetic constraint in early T-cell gene regulation by SPI1 (PU.1)

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Roles of TET and TDG in DNA demethylation in proliferating and non-proliferating immune cells

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A Negative Feedback Loop of Transcription Factors Specifies Alternative Dendritic Cell Chromatin States

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Regulation of Partial and Reversible Endothelial-to-Mesenchymal Transition in Angiogenesis

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Maternal socioeconomic disadvantage is associated with transcriptional indications of greater immune activation and slower tissue maturation in placental biopsies and newborn cord blood

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Decoding the spatial chromatin organization and dynamic epigenetic landscapes of macrophage cells during differentiation and immune activation

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SEPTIN2 suppresses an IFN-γ-independent, proinflammatory macrophage activation pathway

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Glucocorticoid receptor and nuclear factor kappa-b affect three-dimensional chromatin organization

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