The DOI matches its Crossref record; 63 of the 63 references it cites were found in a registry or an index.
Genome-Wide Analysis of Spatial Gene Expression in Arabidopsis Flowers[W]
Open accessAbstract
We have compared the gene expression profiles of inflorescences of the floral homeotic mutants apetala1, apetala2, apetala3, pistillata, and agamous with that of wild-type plants using a flower-specific cDNA microarray and a whole genome oligonucleotide array. By combining the data sets from the individual mutant/wild type comparisons, we were able to identify a large number of genes that are, within flowers, predicted to be specifically or at least predominantly expressed in one type of floral organ. We have analyzed the expression patterns of several of these genes by in situ hybridization and found that they match the predictions that were made based on the microarray experiments. Moreover, genes with known floral organ–specific expression patterns were correctly assigned by our analysis. The vast majority of the identified transcripts are found in stamens or carpels, whereas few genes are predicted to be expressed specifically or predominantly in sepals or petals. These findings indicate that spatially limited expression of a large number of genes is part of flower development and that its extent differs significantly between the reproductive organs and the organs of the perianth.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Basic local alignment search tool
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669
Cluster analysis and display of genome-wide expression patterns
Eisen, M. B., Spellman, P. T., Brown, P. O., & Botstein, D. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.25.14863 · Cited by 16,184
In silico prediction of protein-protein interactions in human macrophages
Souiai, O., Guerfali, F., Ben Miled, S., Brun, C., & Benkahla, A. (2014) · BMC Research Notes · doi:10.1186/1756-0500-7-157 · Cited by 10,803
Significance analysis of microarrays applied to the ionizing radiation response
Tusher, V. G., Tibshirani, R., & Chu, G. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.091062498 · Cited by 10,568
Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana
Alonso, J. M., Stepanova, A. N., Leisse, T. J., Kim, C. J., Chen, H., Shinn, P., Stevenson, D. K., Zimmerman, J., Barajas, P., Cheuk, R., et al. (2003) · Science · doi:10.1126/science.1086391 · Cited by 5,102
The war of the whorls: genetic interactions controlling flower development
Coen, E. S., & Meyerowitz, E. M. (1991) · Nature · doi:10.1038/353031a0 · Cited by 3,008
Self-citationArabidopsis Transcription Factors: Genome-Wide Comparative Analysis Among Eukaryotes
Riechmann, J. L., Heard, J., Martin, G., Reuber, L., Jiang, C.-Z., Keddie, J., Adam, L., Pineda, O., Ratcliffe, O. J., Samaha, R. R., et al. (2000) · Science · doi:10.1126/science.290.5499.2105 · Cited by 2,807
Self-citationEarly flower development in Arabidopsis.
Smyth, D. R., Bowman, J. L., & Meyerowitz, E. M. (1990) · The Plant Cell · doi:10.1105/tpc.2.8.755 · Cited by 2,155
Self-citationThe protein encoded by the Arabidopsis homeotic gene agamous resembles transcription factors
Yanofsky, M. F., Ma, H., Bowman, J. L., Drews, G. N., Feldmann, K. A., & Meyerowitz, E. M. (1990) · Nature · doi:10.1038/346035a0 · Cited by 1,606
Self-citationLEAFY controls floral meristem identity in Arabidopsis
Weigel, D., Alvarez, J., Smyth, D. R., Yanofsky, M. F., & Meyerowitz, E. M. (1992) · Cell · doi:10.1016/0092-8674(92)90295-n · Cited by 1,505
Self-citationGenes directing flower development in Arabidopsis.
Bowman, J. L., Smyth, D. R., & Meyerowitz, E. M. (1989) · The Plant Cell · doi:10.1105/tpc.1.1.37 · Cited by 1,271
Self-citationComplexes of MADS-box proteins are sufficient to convert leaves into floral organs
Honma, T., & Goto, K. (2001) · Nature · doi:10.1038/35054083 · Cited by 1,197
Genetic interactions among floral homeotic genes of Arabidopsis
Bowman, J. L., Smyth, D. R., & Meyerowitz, E. M. (1991) · Development · doi:10.1242/dev.112.1.1 · Cited by 1,166
Self-citationMolecular characterization of the Arabidopsis floral homeotic gene APETALA1
Alejandra Mandel, M., Gustafson-Brown, C., Savidge, B., & Yanofsky, M. F. (1992) · Nature · doi:10.1038/360273a0 · Cited by 1,154
Control of Arabidopsis flower and seed development by the homeotic gene APETALA2.
Jofuku, K. D., den Boer, B. G., Van Montagu, M., & Okamuro, J. K. (1994) · The Plant Cell · doi:10.1105/tpc.6.9.1211 · Cited by 1,137
Dependence of Stem Cell Fate in Arabidopsis on a Feedback Loop Regulated by CLV3 Activity
Brand, U., Fletcher, J. C., Hobe, M., Meyerowitz, E. M., & Simon, R. (2000) · Science · doi:10.1126/science.289.5479.617 · Cited by 1,122
Self-citationJack, T., Brockman, L. L., & Meyerowitz, E. M. (1992) · Cell · doi:10.1016/0092-8674(92)90144-2 · Cited by 903
Self-citationA developmental switch sufficient for flower initiation in diverse plants
Weigel, D., & Nilsson, O. (1995) · Nature · doi:10.1038/377495a0 · Cited by 805
Function and regulation of the Arabidopsis floral homeotic gene PISTILLATA.
Goto, K., & Meyerowitz, E. M. (1994) · Genes & Development · doi:10.1101/gad.8.13.1548 · Cited by 778
Self-citationControl of flower development in Arabidopsis thaliana by APETALA1 and interacting genes
Bowman, J. L., Alvarez, J., Weigel, D., Meyerowitz, E. M., & Smyth, D. R. (1993) · Development · doi:10.1242/dev.119.3.721 · Cited by 755
Self-citationEvaluation of gene expression measurements from commercial microarray platforms
Tan, P. K. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg763 · Cited by 706
Specific and heritable genetic interference by double-stranded RNA in Arabidopsis thaliana
Chuang, C.-F., & Meyerowitz, E. M. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.060034297 · Cited by 646
Self-citationThe FRUITFULL MADS-box gene mediates cell differentiation during Arabidopsis fruit development
Gu, Q., Ferrándiz, C., Yanofsky, M. F., & Martienssen, R. (1998) · Development · doi:10.1242/dev.125.8.1509 · Cited by 635
Yang, W.-C., Ye, D., Xu, J., & Sundaresan, V. (1999) · Genes & Development · doi:10.1101/gad.13.16.2108 · Cited by 544
A gene triggering flower formation in Arabidopsis
Mandel, M. A., & Yanofsky, M. F. (1995) · Nature · doi:10.1038/377522a0 · Cited by 540
Bowman, J. L., & Smyth, D. R. (1999) · Development · doi:10.1242/dev.126.11.2387 · Cited by 534
Riechmann, J. L., Krizek, B. A., & Meyerowitz, E. M. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.10.4793 · Cited by 530
Self-citationMolecular Basis of the cauliflower Phenotype in Arabidopsis
Kempin, S. A., Savidge, B., & Yanofsky, M. F. (1995) · Science · doi:10.1126/science.7824951 · Cited by 509
Comparative Analysis of the Arabidopsis Pollen Transcriptome
Honys, D., & Twell, D. (2003) · Plant Physiology · doi:10.1104/pp.103.020925 · Cited by 503
Zhao, D.-Z., Wang, G.-F., Speal, B., & Ma, H. (2002) · Genes & Development · doi:10.1101/gad.997902 · Cited by 493
Diverse roles for MADS box genes in Arabidopsis development.
Rounsley, S. D., Ditta, G. S., & Yanofsky, M. F. (1995) · The Plant Cell · doi:10.1105/tpc.7.8.1259 · Cited by 481
Negative Regulation of the SHATTERPROOF Genes by FRUITFULL During Arabidopsis Fruit Development
Ferrándiz, C., Liljegren, S. J., & Yanofsky, M. F. (2000) · Science · doi:10.1126/science.289.5478.436 · Cited by 470
Mizukami, Y., & Ma, H. (1992) · Cell · doi:10.1016/0092-8674(92)90271-d · Cited by 455
Role of SUPERMAN in maintaining Arabidopsis floral whorl boundaries
Sakai, H., Medrano, L. J., & Meyerowitz, E. M. (1995) · Nature · doi:10.1038/378199a0 · Cited by 435
Self-citationKrizek, B. A., & Meyerowitz, E. M. (1996) · Development · doi:10.1242/dev.122.1.11 · Cited by 422
Self-citationRegulation of the arabidopsis floral homeotic gene APETALA1
Gustafson-Brown, C., Savidge, B., & Yanofsky, M. F. (1994) · Cell · doi:10.1016/0092-8674(94)90178-3 · Cited by 408
The development of apical embryonic pattern in Arabidopsis
Long, J. A., & Barton, M. K. (1998) · Development · doi:10.1242/dev.125.16.3027 · Cited by 375
Structure of serum response factor core bound to DNA
Pellegrini, L., Tan, S., & Richmond, T. J. (1995) · Nature · doi:10.1038/376490a0 · Cited by 353
Canales, C., Bhatt, A. M., Scott, R., & Dickinson, H. (2002) · Current Biology · doi:10.1016/s0960-9822(02)01151-x · Cited by 347
Schiefthaler, U., Balasubramanian, S., Sieber, P., Chevalier, D., Wisman, E., & Schneitz, K. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.20.11664 · Cited by 345
A sensitive method for the determination of protein-DNA binding specificities
Pollock, R., & Treisman, R. (1990) · Nucleic Acids Research · doi:10.1093/nar/18.21.6197 · Cited by 340
The Arabidopsis myc/bHLH gene ALCATRAZ enables cell separation in fruit dehiscence
Rajani, S., & Sundaresan, V. (2001) · Current Biology · doi:10.1016/s0960-9822(01)00593-0 · Cited by 320
INNER NO OUTER regulates abaxial- adaxial patterning in Arabidopsis ovules
Villanueva, J. M., Broadhvest, J., Hauser, B. A., Meister, R. J., Schneitz, K., & Gasser, C. S. (1999) · Genes & Development · doi:10.1101/gad.13.23.3160 · Cited by 312
Schadt, E. E., Li, C., Ellis, B., & Wong, W. H. (2001) · Journal of Cellular Biochemistry · doi:10.1002/jcb.10073 · Cited by 288
Activation of Floral Homeotic Genes in Arabidopsis
Weigel, D., & Meyerowitz, E. M. (1993) · Science · doi:10.1126/science.261.5129.1723 · Cited by 284
Self-citationMicroarray results: how accurate are they?
Kothapalli, R., Yoder, S. J., Mane, S., & Loughran, T. P. (2002) · BMC Bioinformatics · doi:10.1186/1471-2105-3-22 · Cited by 282
Savidge, B., Rounsley, S. D., & Yanofsky, M. F. (1995) · The Plant Cell · doi:10.1105/tpc.7.6.721 · Cited by 261
Gene Families from the Arabidopsis thaliana Pollen Coat Proteome
Mayfield, J. A., Fiebig, A., Johnstone, S. E., & Preuss, D. (2001) · Science · doi:10.1126/science.1060972 · Cited by 218
A Novel Group of Oleosins Is Present Inside the Pollen ofArabidopsis
Kim, H. U., Hsieh, K., Ratnayake, C., & Huang, A. H. C. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m109298200 · Cited by 179
Spotted Long Oligonucleotide Arrays for Human Gene Expression Analysis
Barczak, A., Rodriguez, M. W., Hanspers, K., Koth, L. L., Tai, Y. C., Bolstad, B. M., Speed, T. P., & Erle, D. J. (2003) · Genome Research · doi:10.1101/gr.1048803 · Cited by 179
Hird, D. L., Worrall, D., Hodge, R., Smartt, S., Paul, W., & Scott, R. J. (1993) · The Plant Journal · doi:10.1046/j.1365-313x.1993.04061023.x · Cited by 162
Huang, H. Y., Mizukami, Y., Hu, Y., & Mā, H. (1993) · Nucleic Acids Research · doi:10.1093/nar/21.20.4769 · Cited by 143
Asamizu, E., Nakamura, Y., Sato, S., & Tabata, S. (2000) · DNA Research · doi:10.1093/dnares/7.3.175 · Cited by 140
Huang, S., McDowell, J. M., Weise, M. J., & Meagher, R. B. (1996) · PLANT PHYSIOLOGY · doi:10.1104/pp.111.1.115 · Cited by 129
Rubinelli, P. M., Hu, Y., & Mā, H. (1998) · Plant Molecular Biology · doi:10.1023/a:1005964431302 · Cited by 89
Organ-specific nuclear RNAs in tobacco.
Kamalay, J. C., & Goldberg, R. B. (1984) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.81.9.2801 · Cited by 89
Bcp1, a gene required for male fertility in Arabidopsis.
Xu, H., Knox, R. B., Taylor, P. E., & Singh, M. B. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.6.2106 · Cited by 85
Tichtinsky, G., Tavares, R., Takvorian, A., Schwebel‐Dugué, N., Twell, D., & Kreis, M. E. (1998) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/s0167-4781(98)00187-0 · Cited by 44
Lebel‐Hardenack, S., Ye, D., Koutníková, H., Saedler, H., & Grant, S. R. (1997) · The Plant Journal · doi:10.1046/j.1365-313x.1997.00515.x · Cited by 43
D EVELOPMENTAL G ENOMIC A PPROACHES IN M ODEL O RGANISMS
Reinke, V., & White, K. P. (2002) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev.genom.3.031302.100922 · Cited by 33
Evidence for an Ancient Split between Constitutive and Pollen-Specific Profilin Genes
Huang, S., McDowell, J. M., Weise, M. J., & Meagher, R. B. (1996) · Cited by 23
Microarray Gene Expression Data Analysis
Xu, Y. (2004) · Wiley eBooks · doi:10.1002/0471647527.ch7 · Cited by 17
Microarray Gene Expression Data Analysis
Liew, A. W., & Gan, X. (2010) · doi:10.1002/9780470892107.ch28 · Cited by 4
Cited by
NAC transcription factors: structurally distinct, functionally diverse
Olsen, A. N., Ernst, H. A., Leggio, L. L., & Skriver, K. (2005) · Trends in Plant Science · doi:10.1016/j.tplants.2004.12.010 · Cited by 1,503
Arabidopsis Regeneration from Multiple Tissues Occurs via a Root Development Pathway
Sugimoto, K., Jiao, Y., & Meyerowitz, E. M. (2010) · Developmental Cell · doi:10.1016/j.devcel.2010.02.004 · Cited by 655
Self-citationMolecular mechanisms of flower development: an armchair guide
Krizek, B. A., & Fletcher, J. C. (2005) · Nature Reviews Genetics · doi:10.1038/nrg1675 · Cited by 624
Mandaokar, A., Thines, B., Shin, B., Markus Lange, B., Choi, G., Koo, Y. J., Yoo, Y. J., Choi, Y. D., Choi, G., & Browse, J. (2006) · The Plant Journal · doi:10.1111/j.1365-313x.2006.02756.x · Cited by 360
Alvarez-Buylla, E. R., Benítez, M., Corvera-Poiré, A., Chaos Cador, Á., de Folter, S., Gamboa de Buen, A., Garay-Arroyo, A., García-Ponce, B., Jaimes-Miranda, F., Pérez-Ruiz, R. V., et al. (2010) · The Arabidopsis Book · doi:10.1199/tab.0127 · Cited by 298
Metadata
- Authors
- Wellmer, F., Riechmann, J. L., Alves-Ferreira, M., & Meyerowitz, E. M.
- Venue
- The Plant Cell
- Publisher
- Oxford University Press (OUP)
- Published
- 2004-05-01
- Volume
- 16
- Issue
- 5
- Pages
- 1314-1326
- ISSN
- 1040-4651 (ISSN-L)
- 1532-298X
- OpenAlex
- W2117348786
- Cited by
- 255
- References
- 63
- FWCI
- 29.24
- Type
- journal article
- Language
- en
- Open access
- bronze
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.