Cited by 122Evolution and Genetic DynamicsMicrobial Metabolic Engineering and BioproductionPhilosophy of Biology and Scientific Explanation

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The functional basis of adaptive evolution in chemostats

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Gresham, David, Hong, Jungeui·2014·FEMS Microbiology Reviews

DOI 10.1111/1574-6976.12082PMC PMC4391987

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Abstract

Two of the central problems in biology are determining the molecular basis of adaptive evolution and understanding how cells regulate their growth. The chemostat is a device for culturing cells that provides great utility in tackling both of these problems: it enables precise control of the selective pressure under which organisms evolve and it facilitates experimental control of cell growth rate. The aim of this review is to synthesize results from studies of the functional basis of adaptive evolution in long-term chemostat selections using Escherichia coli and Saccharomyces cerevisiae. We describe the principle of the chemostat, provide a summary of studies of experimental evolution in chemostats, and use these studies to assess our current understanding of selection in the chemostat. Functional studies of adaptive evolution in chemostats provide a unique means of interrogating the genetic networks that control cell growth, which complements functional genomic approaches and quantitative trait loci (QTL) mapping in natural populations. An integrated approach to the study of adaptive evolution that accounts for both molecular function and evolutionary processes is critical to advancing our understanding of evolution. By renewing efforts to integrate these two research programs, experimental evolution in chemostats is ideally suited to extending the functional synthesis to the study of genetic networks.

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Authors: Gresham, D., & Hong, J.
Affiliations: New York University (US)
Corresponding author: Gresham, David
ORCID: Gresham, David
Hong, Jungeui
Venue: FEMS Microbiology Reviews
Publisher: Oxford University Press (OUP)
Published: 2014-09
Volume: 39
Issue: 1
Pages: n/a-n/a
ISSN: 0168-6445 (ISSN-L)
DOI: 10.1111/1574-6976.12082
PMC: PMC4391987
OpenAlex: W2038785521
Cited by: 122
References: 135
Citations by year: 2026: 2 · 2025: 4 · 2024: 11 · 2023: 9 · 2022: 13 · 2021: 23 · 2020: 12 · 2019: 11 · 2018: 13 · 2017: 8 · 2016: 10 · 2015: 5 · 2014: 1
FWCI: 1.06
Type: journal article
Language: en
Open access: green
www.ncbi.nlm.nih.gov
Locations: FEMS Microbiology Reviews (publishedVersion)
Europe PMC (PubMed Central) (publishedVersion)
PubMed Central (publishedVersion)
PubMed (publishedVersion)
Funders: Office of Extramural Research, National Institutes of Health (GM107466)
National Science Foundation (MCB-1244219)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial Metabolic Engineering and Bioproduction
Social Sciences › Arts and Humanities › History and Philosophy of Science › Philosophy of Biology and Scientific Explanation
Keywords: adaptive evolution, chemostat, experimental evolution, cell growth regulation, gene networks, Escherichia coli, Saccharomyces cerevisiae, selection, growth rate, long-term selection, functional genomics
MeSH terms: Adaptation, Physiological, Escherichia coli, Biological Evolution, Saccharomyces cerevisiae, Bioreactors

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The functional basis of adaptive evolution in chemostats

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