Extensive Variation in Chromatin States Across Humans

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The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation

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The Genetics of Transcription Factor DNA Binding Variation

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Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues

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The effect of genotype and in utero environment on interindividual variation in neonate DNA methylomes

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Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions

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DNA methylation dynamics during B cell maturation underlie a continuum of disease phenotypes in chronic lymphocytic leukemia

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Landscape of stimulation-responsive chromatin across diverse human immune cells

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Methylation QTLs Are Associated with Coordinated Changes in Transcription Factor Binding, Histone Modifications, and Gene Expression Levels

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Loss of TET2 in hematopoietic cells leads to DNA hypermethylation of active enhancers and induction of leukemogenesis

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Fine-mapping cellular QTLs with RASQUAL and ATAC-seq

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Transgenerational inheritance: how impacts to the epigenetic and genetic information of parents affect offspring health

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Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans

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Integrative analysis of haplotype-resolved epigenomes across human tissues

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Chromatin three-dimensional interactions mediate genetic effects on gene expression

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Population Variation and Genetic Control of Modular Chromatin Architecture in Humans

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Landscape of cohesin-mediated chromatin loops in the human genome

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High-throughput identification of human SNPs affecting regulatory element activity

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Genetic determinants of co-accessible chromatin regions in activated T cells across humans

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Enhancing GTEx by bridging the gaps between genotype, gene expression, and disease

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Enhancer Malfunction in Cancer

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The environment, epigenome, and asthma

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A MYB-Domain Protein EFM Mediates Flowering Responses to Environmental Cues in Arabidopsis

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The Genetic and Mechanistic Basis for Variation in Gene Regulation

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Genetic sources of population epigenomic variation

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Genetic Variation in Human DNA Replication Timing

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Obligatory and facilitative allelic variation in the DNA methylome within common disease-associated loci

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Individuality and Variation of Personal Regulomes in Primary Human T Cells

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Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell developmentPreprint

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Epigenomic profiling of primary gastric adenocarcinoma reveals super-enhancer heterogeneity

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Epigenetics of idiopathic pulmonary fibrosis

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PRDM9 Drives Evolutionary Erosion of Hotspots in Mus musculus through Haplotype-Specific Initiation of Meiotic Recombination

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Transcription factor binding predicts histone modifications in human cell lines

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Pooled ChIP-Seq Links Variation in Transcription Factor Binding to Complex Disease Risk

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Synthetic CpG islands reveal DNA sequence determinants of chromatin structure

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Identification of altered cis-regulatory elements in human disease

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A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals

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CTCF-Mediated Chromatin Loops between Promoter and Gene Body Regulate Alternative Splicing across Individuals

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Taming Human Genetic Variability: Transcriptomic Meta-Analysis Guides the Experimental Design and Interpretation of iPSC-Based Disease Modeling

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Genetic–epigenetic dysregulation of thymic TSH receptor gene expression triggers thyroid autoimmunity

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Population whole-genome bisulfite sequencing across two tissues highlights the environment as the principal source of human methylome variation

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Gene regulation at a distance: From remote enhancers to 3D regulatory ensembles

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DNA (de)methylation in embryonic stem cells controls CTCF-dependent chromatin boundariesPreprint

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Laying a solid foundation for Manhattan – ‘setting the functional basis for the post-GWAS era’

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Large-Scale Identification of Coregulated Enhancer Networks in the Adult Human Brain

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Common DNA sequence variation influences 3-dimensional conformation of the human genome

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Single nucleotide polymorphisms in clinics: Fantasy or reality for cancer?

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Nanoscale chromatin profiling of gastric adenocarcinoma reveals cancer-associated cryptic promoters and somatically acquired regulatory elements

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Exploring the function of genetic variants in the non-coding genomic regions: approaches for identifying human regulatory variants affecting gene expression

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Genomic approaches for understanding the genetics of complex diseasePreprint

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Enhancer histone-QTLs are enriched on autoimmune risk haplotypes and influence gene expression within chromatin networks

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Remodeling of active endothelial enhancers is associated with aberrant gene-regulatory networks in pulmonary arterial hypertension

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dcHiC detects differential compartments across multiple Hi-C datasets

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Human hair shaft proteomic profiling: individual differences, site specificity and cuticle analysis

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Epigenetic modifications are associated with inter-species gene expression variation in primates

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Genome-wide enhancer annotations differ significantly in genomic distribution, evolution, and function

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Identifying the Biological Basis of GWAS Hits for Endometriosis1

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FOXO3 Selectively Amplifies Enhancer Activity to Establish Target Gene Regulation

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Systematic chromatin state comparison of epigenomes associated with diverse properties including sex and tissue type

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MAnorm2 for quantitatively comparing groups of ChIP-seq samplesPreprint

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Sensitive detection of chromatin-altering polymorphisms reveals autoimmune disease mechanisms

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New considerations for hiPSC-based models of neuropsychiatric disorders

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Epigenetics in lung fibrosis

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Transcriptome-wide association study of schizophrenia and chromatin activity yields mechanistic disease insightsPreprint

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Genetic association of molecular traits: A help to identify causative variants in complex diseases

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