Advantage of Using Inosine at the 3′ Termini of 16S rRNA Gene Universal Primers for the Study of Microbial Diversity

The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Saitou, N., & Nei, M. (1987) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040454 · Cited by 59,962 · see citing works

CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP

Felsenstein, J. (1985) · Evolution · doi:10.1111/j.1558-5646.1985.tb00420.x · Cited by 44,735 · see citing works

16S ribosomal DNA amplification for phylogenetic study

Weisburg, W. G., Barns, S. M., Pelletier, D. A., & Lane, D. J. (1991) · Journal of Bacteriology · doi:10.1128/jb.173.2.697-703.1991 · Cited by 11,957 · see citing works

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

Kumar, S. (2004) · Briefings in Bioinformatics · doi:10.1093/bib/5.2.150 · Cited by 11,642 · see citing works

Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology

Stackebrandt, E., & Goebel, B. M. (1994) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/00207713-44-4-846 · Cited by 7,156 · see citing works

Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses.

Lane, D. J., Pace, B., Olsen, G. J., Stahl, D. A., Sogin, M. L., & Pace, N. R. (1985) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.82.20.6955 · Cited by 3,057 · see citing works

Codon—anticodon pairing: The wobble hypothesis

Crick, F. H. C. (1966) · Journal of Molecular Biology · doi:10.1016/s0022-2836(66)80022-0 · Cited by 2,029 · see citing works

Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR

Suzuki, M. T., & Giovannoni, S. (1996) · Applied and Environmental Microbiology · doi:10.1128/aem.62.2.625-630.1996 · Cited by 2,021 · see citing works

The RDP (Ribosomal Database Project)

Maidak, B. L., Olsen, G. J., Larsen, N. E., Overbeek, R., McCaughey, M. J., & Woese, C. R. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.1.109 · Cited by 2,018 · see citing works

Review and re-analysis of domain-specific 16S primers

Baker, G. C., Smith, J. J., & Cowan, D. A. (2003) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2003.08.009 · Cited by 1,867 · see citing works

Bias in template-to-product ratios in multitemplate PCR

Polz, M. F., & Cavanaugh, C. M. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.10.3724-3730.1998 · Cited by 1,484 · see citing works

Estimating prokaryotic diversity and its limits

Curtis, T., Sloan, W., & Scannell, J. (2002) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.142680199 · Cited by 1,175 · see citing works

Effects of primer-template mismatches on the polymerase chain reaction: Human immunodeficiency virus type 1 model studies

Kwok, S., Kellogg, D. E., McKinney, N., Spasic, D., Goda, L., Levenson, C., & Sninsky, J. J. (1990) · Nucleic Acids Research · doi:10.1093/nar/18.4.999 · Cited by 1,032 · see citing works

DNA Extraction from Soils: Old Bias for New Microbial Diversity Analysis Methods

Martin-Laurent, F. A., Philippot, L., Hallet, S., Chaussod, R., Germon, J. C., Soulas, G., & Catroux, G. (2001) · Applied and Environmental Microbiology · doi:10.1128/aem.67.5.2354-2359.2001 · Cited by 727 · see citing works

Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils

Felske, A., Rheims, H., Wolterink, A., Stackebrandt, E. S., & Akkermans, A. D. L. (1997) · Microbiology · doi:10.1099/00221287-143-9-2983 · Cited by 380 · see citing works

Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting

Watanabe, K., Kodama, Y., & Harayama, S. (2001) · Journal of Microbiological Methods · doi:10.1016/s0167-7012(01)00220-2 · Cited by 360 · see citing works

Base pairing involving deoxyinosine: implications for probe design

Martin, F. H., Castro, M. M., Aboul‐ela, F., & Tinoco, I. (1985) · Nucleic Acids Research · doi:10.1093/nar/13.24.8927 · Cited by 342 · see citing works

Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis

Sekiguchi, Y., Kamagata, Y., Syutsubo, K., Ohashi, A., Harada, H., & Nakamura, K. (1998) · Microbiology · doi:10.1099/00221287-144-9-2655 · Cited by 327 · see citing works

Molecular microbial ecology: land of the one-eyed king

Forney, L. J., Zhou, X., & Brown, C. J. (2004) · Current Opinion in Microbiology · doi:10.1016/j.mib.2004.04.015 · Cited by 300 · see citing works

Biased 16S rDNA PCR amplification caused by interference from DNA flanking the template region

Hansen, M. C., Tolker‐Nielsen, T., Givskov, M., & Molin, S. (1998) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.1998.tb00500.x · Cited by 236 · see citing works

Group-specific identification of polioviruses by PCR using primers containing mixed-base or deoxyinosine residue at positions of codon degeneracy.

Kilpatrick, D. R., Nottay, B., Yang, C. F., Yang, S. J., Mulders, M. N., Holloway, B. P., Pallansch, M. A., & Kew, O. M. (1996) · Journal of Clinical Microbiology · doi:10.1128/jcm.34.12.2990-2996.1996 · Cited by 172 · see citing works

Development of oligonucleotide probes and PCR primers for detecting phylogenetic subgroups of sulfate-reducing bacteria

Daly, K., Sharp, R. J., & McCarthy, A. J. (2000) · Microbiology · doi:10.1099/00221287-146-7-1693 · Cited by 164 · see citing works

Characterization of polymerase chain reaction amplification of specific alleles

Sarkar, G., CASSADY, J. D., Bottema, C. D. K., & Sommer, S. S. (1990) · Analytical Biochemistry · doi:10.1016/0003-2697(90)90573-r · Cited by 157 · see citing works

Nearest-neighbor thermodynamics of deoxyinosine pairs in DNA duplexes

Watkins, N. E., & SantaLucia, J. (2005) · Nucleic Acids Research · doi:10.1093/nar/gki918 · Cited by 146 · see citing works

PCR protocols: current methods and applications.

White, B. A. (1993) · Humana Press eBooks · Cited by 128 · see citing works

PCR Protocols

White, B. A. (1993) · Humana Press eBooks · doi:10.1385/0896032442 · Cited by 92 · see citing works

The Identification and Characterization of Osmotolerant Yeast Isolates from Chemical Wastewater Evaporation Ponds

Lahav, R., Fareleira, P., Nejidat, A., & Abeliovich, A. (2002) · Microbial Ecology · doi:10.1007/s00248-002-2001-4 · Cited by 68 · see citing works

In situ PCR: protocols and applications.Preprint

Nuovo, G. J. (1995) · Genome Research · doi:10.1101/gr.4.4.s151 · Cited by 54 · see citing works

Enhanced evolutionary PCR using oligonucleotides with inosine at the 3′-terminus

Batzer, M. A., Carlton, J. E., & Deininger, P. L. (1991) · Nucleic Acids Research · doi:10.1093/nar/19.18.5081 · Cited by 32 · see citing works

Use of deoxyinosine-containing primers vs degenerate primers for polymerase chain reaction based on ambiguous sequence information

Rossolini, G. M., Cresti, S., Ingianni, A., Cattani, P., Riccio, M. L., & Satta, G. (1994) · Molecular and Cellular Probes · doi:10.1006/mcpr.1994.1013 · Cited by 30 · see citing works

PCR with deoxyinosine-containing primers using DNA polymerases with proofreading activity.Preprint

Fujiwara, H., Fujiwara, K., & Hashimoto, K. (1995) · Genome Research · doi:10.1101/gr.4.4.239 · Cited by 14 · see citing works

<i>Fusobacterium nucleatum</i> infection is prevalent in human colorectal carcinoma

Castellarin, M., Warren, R. L., Freeman, J. D., Dreolini, L., Krzywinski, M., Strauss, J., Barnes, R., Watson, P., Allen-Vercoe, E., Moore, R. A., et al. (2012) · Genome Research · doi:10.1101/gr.126516.111 · Cited by 2,043 · see citing works

How to get more out of molecular fingerprints: practical tools for microbial ecology

Marzorati, M., Wittebolle, L., Boon, N., Daffonchio, D. G., & Verstraete, W. (2008) · Environmental Microbiology · doi:10.1111/j.1462-2920.2008.01572.x · Cited by 501 · see citing works

Bacteria of the genus Asaia stably associate with Anopheles stephensi , an Asian malarial mosquito vector

Favia, G., Ricci, I., Damiani, C., Raddadi, N., Crotti, E., Marzorati, M., Rizzi, A., Urso, R., Brusetti, L., Borin, S., et al. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0610451104 · Cited by 471 · see citing works

Assessment of the Microbial Ecology of Ruminal Methanogens in Cattle with Different Feed Efficiencies

Zhou, M., Hernandez‐Sanabria, E., & Guan, L. L. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.02815-08 · Cited by 343 · see citing works

Biogeography of soil archaea and bacteria along a steep precipitation gradient

Angel, R., Soares, M. I. M., Ungar, E. D., & Gillor, O. (2009) · The ISME Journal · doi:10.1038/ismej.2009.136 · Cited by 294 · see citing works

Identification of universal gut microbial biomarkers of common human intestinal diseases by meta-analysis

Mancabelli, L., Milani, C., Lugli, G. A., Turroni, F., Cocconi, D., van Sinderen, D., & Ventura, M. (2017) · FEMS Microbiology Ecology · doi:10.1093/femsec/fix153 · Cited by 240 · see citing works

Cross-Kingdom Amplification Using Bacteria -Specific Primers: Complications for Studies of Coral Microbial Ecology

Galkiewicz, J. P., & Kellogg, C. A. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.01303-08 · Cited by 236 · see citing works

Impact of feed efficiency and diet on adaptive variations in the bacterial community in the rumen fluid of cattle

Hernandez-Sanabria, E., Goonewardene, L. A., Wang, Z., Durunna, O. N., Moore, S. S., & Guan, L. L. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.05114-11 · Cited by 207 · see citing works

Molecular analysis of gut microbiota in obesity among Indian individuals

Patil, D. P., Dhotre, D. P., Chavan, S. G., Sultan, A., Jain, D. S., Lanjekar, V. B., Gangawani, J., Shah, P. S., Todkar, J., Shah, S. S., et al. (2012) · Journal of Biosciences · doi:10.1007/s12038-012-9244-0 · Cited by 189 · see citing works

Quantitative effects of position and type of single mismatch on single base primer extension

Wu, J., Hong, P., & Liu, W. (2009) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2009.03.001 · Cited by 174 · see citing works

Bacteriophage predation regulates microbial abundance and diversity in a full-scale bioreactor treating industrial wastewater

Shapiro, O. H., Kushmaro, A., & Brenner, A. (2009) · The ISME Journal · doi:10.1038/ismej.2009.118 · Cited by 173 · see citing works

Characterization of black band disease in Red Sea stony corals

Barneah, O., Ben‐Dov, Y., Kramarsky‐Winter, E., & Kushmaro, A. (2007) · Environmental Microbiology · doi:10.1111/j.1462-2920.2007.01315.x · Cited by 150 · see citing works

Natural populations of lactic acid bacteria associated with silage fermentation as determined by phenotype, 16S ribosomal RNA and recA gene analysis.

Pang, H., Qin, G., Tan, Z., Li, Z., Wang, Y., & Cai, Y. (2011) · Systematic and Applied Microbiology · doi:10.1016/j.syapm.2010.10.003 · Cited by 145 · see citing works

Quantification of Sulfate-reducing Bacteria in Industrial Wastewater, by Real-time Polymerase Chain Reaction (PCR) Using dsrA and apsA Genes

Ben‐Dov, Y., Brenner, A., & Kushmaro, A. (2007) · Microbial Ecology · doi:10.1007/s00248-007-9233-2 · Cited by 129 · see citing works

A Universal Method for the Identification of Bacteria Based on General PCR Primers

Barghouthi, S. A. (2011) · Indian Journal of Microbiology · doi:10.1007/s12088-011-0122-5 · Cited by 128 · see citing works

Trends in designing microbial silage quality by biotechnological methods using lactic acid bacteria inoculants: a minireview.

Fabiszewska, A. U., Zielińska, K. J., & Wróbel, B. (2019) · World Journal of Microbiology and Biotechnology · doi:10.1007/s11274-019-2649-2 · Cited by 121 · see citing works

Changes in Bacterial Diversity Associated with Epithelial Tissue in the Beef Cow Rumen during the Transition to a High-Grain Diet

Chen, Y., Penner, G. B., Li, M., Oba, M., & Guan, L. L. (2011) · Applied and Environmental Microbiology · doi:10.1128/aem.00375-11 · Cited by 119 · see citing works

Identification of Bacterial Fish Pathogens in Brazil by Direct Colony PCR and 16S rRNA Gene Sequencing

Sebastião, F. D. A., Furlan, L. R., Hashimoto, D. T., & Pilarski, F. (2015) · Advances in Microbiology · doi:10.4236/aim.2015.56042 · Cited by 103 · see citing works

Endophytic bacterial diversity in grapevine (Vitis vinifera L.) leaves described by 16S rRNA gene sequence analysis and length heterogeneity-PCR

Bulgari, D., Casati, P., Brusetti, L., Quaglino, F., Brasca, M., Daffonchio, D. G., & Bianco, P. A. (2009) · The Journal of Microbiology · doi:10.1007/s12275-009-0082-1 · Cited by 100 · see citing works

Identification and Antimicrobial Activity Detection of Lactic Acid Bacteria Isolated from Corn Stover Silage

Li, D., Ni, K., Pang, H., Wang, Y., Cai, Y., & Jin, Q. (2015) · Asian-Australasian Journal of Animal Sciences · doi:10.5713/ajas.14.0439 · Cited by 92 · see citing works

Conditioning film and initial biofilm formation on ceramics tiles in the marine environment

Siboni, N., Lidor, M., Kramarsky‐Winter, E., & Kushmaro, A. (2007) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2007.00809.x · Cited by 91 · see citing works

Influence of Sire Breed on the Interplay among Rumen Microbial Populations Inhabiting the Rumen Liquid of the Progeny in Beef Cattle

Hernandez‐Sanabria, E., Goonewardene, L. A., Wang, Z., Zhou, M., Moore, S. S., & Guan, L. L. (2013) · PLoS ONE · doi:10.1371/journal.pone.0058461 · Cited by 78 · see citing works

Characterization and application of lactic acid bacteria for tropical silage preparation

Pholsen, S., Khota, W., Pang, H., Higgs, D., & Cai, Y. (2016) · Animal Science Journal · doi:10.1111/asj.12534 · Cited by 79 · see citing works

Phenotypic and genotypic analyses of clinical Fusobacterium nucleatum and Fusobacterium periodonticum isolates from the human gut

Strauss, J., White, A. P., Ambrose, C., McDonald, J. A. K., & Allen‐Vercoe, E. (2008) · Anaerobe · doi:10.1016/j.anaerobe.2008.12.003 · Cited by 72 · see citing works

Volatile flavour components, microbiota and their correlations in different sufu, a Chinese fermented soybean food

Xie, C., Zeng, H., Wang, C., Xu, Z., & Qin, L. (2018) · Journal of Applied Microbiology · doi:10.1111/jam.14078 · Cited by 67 · see citing works

Naturally Occurring Culturable Aerobic Gut Flora of Adult Phlebotomus papatasi, Vector of Leishmania major in the Old World

Mukhopadhyay, J., Braig, H. R., ROWTON, E. D., & Ghosh, K. (2012) · PLoS ONE · doi:10.1371/journal.pone.0035748 · Cited by 64 · see citing works

Studies on biosurfactant from Oceanobacillus sp. BRI 10 isolated from Antarctic sea water

Jadhav, V. V., Yadav, A., Shouche, Y. S., Aphale, S., Moghe, A., Pillai, S., Arora, A., & Bhadekar, R. K. (2013) · Desalination · doi:10.1016/j.desal.2013.03.017 · Cited by 63 · see citing works

Comparison of Culture Methods for Isolation of Nontuberculous Mycobacteria from Surface Waters

Radomski, N., Cambau, E., Moulin, L., Haenn, S., Moilleron, R., & Lucas, F. S. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.02659-09 · Cited by 62 · see citing works

Identification of lactic acid bacteria isolated from corn stovers

Pang, H., Zhang, M., Qin, G., Tan, Z., Li, Z., Wang, Y., & Cai, Y. (2011) · Animal Science Journal · doi:10.1111/j.1740-0929.2011.00894.x · Cited by 61 · see citing works

Biogeography of bacterial communities in hot springs: a focus on the actinobacteria

Valverde, Á., Tuffin, M. I., & Cowan, D. A. (2012) · Extremophiles · doi:10.1007/s00792-012-0465-9 · Cited by 60 · see citing works

Effects of Fe-oxidizing bacteria (FeOB) on iron plaque formation, As concentrations and speciation in rice (Oryza sativa L.)

Xiao, A., Li, W. C., & Ye, Z. (2020) · Ecotoxicology and Environmental Safety · doi:10.1016/j.ecoenv.2019.110136 · Cited by 59 · see citing works

Application and Future Prospective of Lactic Acid Bacteria as Natural Additives for Silage Production—A Review

Soundharrajan, I., Park, H. S., Sathya, R., Sivanesan, R., & Choi, K. C. (2021) · Applied Sciences · doi:10.3390/app11178127 · Cited by 60 · see citing works

Phenotypic and phylogenetic analysis of lactic acid bacteria isolated from forage crops and grasses in the Tibetan Plateau

Pang, H., Tan, Z., Qin, G., Wang, Y., Li, Z., Jin, Q., & Cai, Y. (2012) · The Journal of Microbiology · doi:10.1007/s12275-012-1284-5 · Cited by 55 · see citing works

Natural Lactic Acid Bacteria Population and Silage Fermentation of Whole-crop Wheat

Ni, K., Wang, Y., Cai, Y., & Pang, H. (2015) · Asian-Australasian Journal of Animal Sciences · doi:10.5713/ajas.14.0955 · Cited by 54 · see citing works

Development ofFaecalibacterium16S rRNA gene marker for identification of human faeces

Zheng, G., Yampara-Iquise, H., Jones, J. E., & Carson, C. A. (2009) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2008.04037.x · Cited by 54 · see citing works

Lactobacillus nasuensis sp. nov., a lactic acid bacterium isolated from silage, and emended description of the genus Lactobacillus

Cai, Y., Pang, H., Kitahara, M., & Ohkuma, M. (2011) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.031781-0 · Cited by 53 · see citing works

Changes in human gut flora with age: an Indian familial study

Marathe, N. P., Shetty, S. A., Lanjekar, V. B., Ranade, D. R., & Shouche, Y. S. (2012) · BMC Microbiology · doi:10.1186/1471-2180-12-222 · Cited by 49 · see citing works

Capturing Greater 16S rRNA Gene Sequence Diversity within the Domain Bacteria

Winsley, T. J., van Dorst, J. M., Brown, M. V., & Ferrari, B. C. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.01299-12 · Cited by 49 · see citing works

Structure and function of the bacterial community associated with the Mediterranean fruit fly

Ben‐Yosef, M., Jurkevich, E., Behar, A., Yuval, B., & Lauzon, C. R. (2008) · Contemporary topics in entomology series · doi:10.1201/9781420064117.ch11 · Cited by 48 · see citing works

Connector Inversion Probe Technology: A Powerful One-Primer Multiplex DNA Amplification System for Numerous Scientific Applications

Akhras, M. S., Unemo, M., Thiyagarajan, S., Nyrén, P., Davis, R. W., Fire, A. Z., & Pourmand, N. (2007) · PLoS ONE · doi:10.1371/journal.pone.0000915 · Cited by 47 · see citing works

Molecular Methods to Measure Intestinal Bacteria: A Review

Inglis, G. D., Thomas, M. C., Thomas, D. K., Kalmokoff, M. L., Brooks, S. P. J., & Selinger, L. B. (2012) · Journal of AOAC International · doi:10.5740/jaoacint.sge_inglis · Cited by 46 · see citing works

Methane-related changes in prokaryotes along geochemical profiles in sediments of Lake Kinneret (Israel)

Bar-Or, I., Ben‐Dov, Y., Kushmaro, A., Eckert, W., & Sivan, O. (2015) · Biogeosciences · doi:10.5194/bg-12-2847-2015 · Cited by 38 · see citing works

Broad‐Range PCR for Detection and Identification of Bacteria

Maiwald, M. (2011) · Molecular Microbiology · doi:10.1128/9781555816834.ch31 · Cited by 38 · see citing works

Naturally Occurring Lactic Acid Bacteria Isolated from Tomato Pomace Silage

Wu, J.-J., Du, R.-P., Gao, M., Sui, Y.-Q., Xiu, L., & Wang, X. (2014) · Asian-Australasian Journal of Animal Sciences · doi:10.5713/ajas.2013.13670 · Cited by 31 · see citing works

Bacterial communities associated with silage of different forage crops in Malaysian climate analysed using 16S amplicon metagenomics

Hisham, M. B., Hashim, A. M., Hanafi, N. M., Rahman, N. A., Mutalib, N. E. A., Tan, C. K., Nazli, M. H., & Yusoff, N. F. M. (2022) · Scientific Reports · doi:10.1038/s41598-022-08819-4 · Cited by 34 · see citing works

Changes in microbial diversity in industrial wastewater evaporation ponds following artificial salination

Ben‐Dov, Y., Shapiro, O. H., Gruber, R., Brenner, A., & Kushmaro, A. (2008) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2008.00549.x · Cited by 27 · see citing works

How the ‘kitome’ influences the characterization of bacterial communities in lepidopteran samples with low bacterial biomass

Voirol, L. R. P., Valsamakis, G., Yu, M., Johnston, P. R., & Hilker, M. (2020) · Journal of Applied Microbiology · doi:10.1111/jam.14919 · Cited by 24 · see citing works

Use of order-specific primers to investigate the methanogenic diversity in acetate enrichment system

Shin, S. G., Lee, C., Hwang, K., Ahn, J., & Hwang, S. (2008) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-008-0417-7 · Cited by 24 · see citing works

Selective Thermotolerant Lactic Acid Bacteria Isolated From Fermented Juice of Epiphytic Lactic Acid Bacteria and Their Effects on Fermentation Quality of Stylo Silages

Pitiwittayakul, N., Bureenok, S., & Schonewille, J. T. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.673946 · Cited by 23 · see citing works

Identification and phylogenetic characterization of novel Lactobacillus plantarum species and their metabolite profiles in grass silage

Arasu, M. V., Jung, M., Kim, D., Park, H. S., Soundharrajan, I., Al-Dhabi, N. A., & Choi, K. C. (2014) · Annals of Microbiology · doi:10.1007/s13213-014-0830-2 · Cited by 22 · see citing works

Effects of Different Lactic Acid Bacteria in Single or Mixed Form on the Fermentative Parameters and Nutrient Contents of Early Heading Triticale Silage for Livestock

Soundharrajan, I., Jung, J. S., Muthusamy, K., Lee, B. H., Park, H. S., Sivanesan, R., & Choi, K. C. (2023) · Foods · doi:10.3390/foods12234296 · Cited by 19 · see citing works

Probiotic Characteristics of Ligilactobacillus salivarius AS22 Isolated from Sheep Dung and Its Application in Corn-Fox Tail Millet Silage

Balasubramanian, B., Soundharrajan, I., Al-Dhabi, N. A., Vijayaraghavan, P., Balasubramanian, K., Arasu, M. V., & Choi, K. C. (2021) · Applied Sciences · doi:10.3390/app11209447 · Cited by 17 · see citing works

Effects of biosolids application on nitrogen dynamics and microbial structure in a saline–sodic soil of the former Lake Texcoco (Mexico)

Rojas-Oropeza, M., Dendooven, L., Garza-Avendaño, L., Souza, V., Philippot, L., & Cabirol, N. (2009) · Bioresource Technology · doi:10.1016/j.biortech.2009.10.088 · Cited by 17 · see citing works

Evaluation of lactic acid bacteria isolated from alfalfa for silage fermentation

Li, D., Wang, Y., Zhang, Y., Lin, Y., & Yang, F. (2018) · Grassland Science · doi:10.1111/grs.12198 · Cited by 17 · see citing works

Application of customised bacterial inoculants for grass haylage production and its effectiveness on nutrient composition and fermentation quality of haylage

Soundharrajan, I., Kim, D., Srigopalram, S., Kuppusamy, P., Park, H. S., Yoon, Y. H., Kim, W. H., Song, Y. G., & Choi, K. C. (2017) · 3 Biotech · doi:10.1007/s13205-017-0965-5 · Cited by 16 · see citing works

Atypical flavobacteria recovered from diseased fish in the Western United States

Heckman, T. I., Yazdi, Z., Pomaranski, E. K., Sebastião, F. D. A., Mukkatira, K., Vuglar, B. M., Cain, K. D., Loch, T. P., & Soto, E. (2023) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2023.1149032 · Cited by 15 · see citing works

Potential of Lactic Acid Bacteria in Plant Growth Promotion

Abhyankar, P. S., Gunjal, A. B., Kapadnis, B. P., & Ambade, S. V. (2022) · Bhartiya Krishi Anusandhan Patrika · doi:10.18805/bkap374 · Cited by 15 · see citing works

spyder, a new method for in silico design and assessment of 16S rRNA gene primers for molecular microbial ecology

Thomas, M. C., Thomas, D. K., Selinger, L. B., & Inglis, G. D. (2011) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2011.02302.x · Cited by 15 · see citing works

Aerobic biodegradation of the brominated flame retardants, dibromoneopentyl glycol and tribromoneopentyl alcohol

Segev, O., Meusel, W., Friedenberger, M., Brenner, A., & Kushmaro, A. (2009) · Biodegradation · doi:10.1007/s10532-009-9249-z · Cited by 14 · see citing works

Substitution by Inosine at the 3′-Ultimate and Penultimate Positions of 16S rRNA Gene Universal Primers

Ben‐Dov, Y., Siboni, N., Shapiro, O. H., Arotsker, L., & Kushmaro, A. (2010) · Microbial Ecology · doi:10.1007/s00248-010-9718-2 · Cited by 14 · see citing works

Functional metagenomics: a tool to gain knowledge for agronomic and veterinary sciences

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Inosine at Different Primer Positions to Study Structure and Diversity of Prokaryotic Populations

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Isolation and cellular fatty acid composition of psychrotrophic Halomonas strains from Antarctic sea water

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Beneficial Effects of Lactic Acid Bacteria Inoculation on Oat Based Silage in South Korea

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Bacterial Diversity in Biological Soil Crusts from Extrazonal Mountain Dry Steppes in Northern Mongolia

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Detection and Identification of the Latent Microorganisms in the Corrosion Layers of Ancient Bronze Mirrors

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Nucleic Acid Based Pathogen Diagnostics

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Metagenomic Analyses of Glacier Ice

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Evolving humanity: What will become of us?

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New strains of lactic acid bacteria Lacticaseibacillus pracasei, Enterococcus faecium, and Lactobacillus plantarum for coarse feed silage in the Leningrad region

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Berg, A. M. (2013) · Figshare

Complementary retrieval of 16S rRNA gene sequences using broad-range primers with inosine at the 3′-terminus: implications for the study of microbial diversity

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Inosine at Different Primer Positions to Study Structure and Diversity of Prokaryotic Populations

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Substitution by Inosine at the 3′-Ultimate and Penultimate Positions of 16S rRNA Gene Universal Primers

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Design and Experimental Application of a Novel Non-Degenerate Universal Primer Set that Amplifies Prokaryotic 16S rRNA Genes with a Low Possibility to Amplify Eukaryotic rRNA Genes

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Enhanced universality of broad-ranged (inosine-containing) 16S rDNA primers as determined by terminal restriction fragment length polymorphism (T-RFLP) profiling

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