The DOI matches its Crossref record; 69 of the 69 references it cites were found in a registry or an index.
Early Innate Immunity to Bacterial Infection in the Lung Is Regulated Systemically by the Commensal Microbiota via Nod-Like Receptor Ligands
Open accessAbstract
The commensal microbiota is a major regulator of the immune system. The majority of commensal bacteria inhabit the gastrointestinal tract and are known to regulate local mucosal defenses against intestinal pathogens. There is growing appreciation that the commensal microbiota also regulates immune responses at extraintestinal sites. Currently, however, it is unclear how this influences host defenses against bacterial infection outside the intestine. Microbiota depletion caused significant defects in the early innate response to lung infection by the major human pathogen Klebsiella pneumoniae. After microbiota depletion, early clearance of K. pneumoniae was impaired, and this could be rescued by administration of bacterial Nod-like receptor (NLR) ligands (the NOD1 ligand MurNAcTri(DAP) and NOD2 ligand muramyl dipeptide [MDP]) but not bacterial Toll-like receptor (TLR) ligands. Importantly, NLR ligands from the gastrointestinal, but not upper respiratory, tract rescued host defenses in the lung. Defects in early innate immunity were found to be due to reduced reactive oxygen species-mediated killing of bacteria by alveolar macrophages. These data show that bacterial signals from the intestine have a profound influence on establishing the levels of antibacterial defenses in distal tissues.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“Experimental data suggest that early exposure to a diverse intestinal microbiome is essential for the development of an intact immune response”
From The microbiome and critical illness (2016) · cites this paper as [158]
In the citing paper
“newborn mice with antibiotic-suppressed microbiota have increased susceptibility to pulmonary infections158”
From The microbiome and critical illness (2016) · cites this paper as [158]
Citations
Cites
Origin and physiological roles of inflammation
Medzhitov, R. (2008) · Nature · doi:10.1038/nature07201 · Cited by 6,618
The gut microbiota shapes intestinal immune responses during health and disease
Round, J. L., & Mazmanian, S. K. (2009) · Nature Reviews Immunology · doi:10.1038/nri2515 · Cited by 5,029
Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria
Ivanov, I. I., Atarashi, K., Manel, N., Brodie, E. L., Shima, T., Karaoz, U., Wei, D., Goldfarb, K. C., Santee, C. A., Lynch, S. V., et al. (2009) · Cell · doi:10.1016/j.cell.2009.09.033 · Cited by 4,554
Recognition of Commensal Microflora by Toll-Like Receptors Is Required for Intestinal Homeostasis
Rakoff-Nahoum, S., Paglino, J., Eslami-Varzaneh, F., Edberg, S., & Medzhitov, R. (2004) · Cell · doi:10.1016/j.cell.2004.07.002 · Cited by 4,251
Interactions Between the Microbiota and the Immune System
Hooper, L. V., Littman, D. R., & Macpherson, A. J. (2012) · Science · doi:10.1126/science.1223490 · Cited by 4,173
Ecological and Evolutionary Forces Shaping Microbial Diversity in the Human Intestine
Ley, R. E., Peterson, D. A., & Gordon, J. I. (2006) · Cell · doi:10.1016/j.cell.2006.02.017 · Cited by 3,358
Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota
Atarashi, K., Tanoue, T., Oshima, K., Suda, W., Nagano, Y., Nishikawa, H., Fukuda, S., Saito, T., Narushima, S., Hase, K., et al. (2013) · Nature · doi:10.1038/nature12331 · Cited by 2,872
Recognition of microorganisms and activation of the immune response
Medzhitov, R. (2007) · Nature · doi:10.1038/nature06246 · Cited by 2,862
Points of control in inflammation
Nathan, C. (2002) · Nature · doi:10.1038/nature01320 · Cited by 2,738
Innate Immunity: The Virtues of a Nonclonal System of Recognition
Medzhitov, R., & Janeway, C. A. (1997) · Cell · doi:10.1016/s0092-8674(00)80412-2 · Cited by 2,434
Cited by
Sorted by citations
Emerging Pathogenic Links Between Microbiota and the Gut-Lung Axis
Budden, K. F., Gellatly, S. L., Wood, D. L. A., Cooper, M. A., Morrison, M., Hugenholtz, P., & Hansbro, P. M. (2017) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2016.142 · Cited by 1,606
van der Poll, T., Shankar‐Hari, M., & Wiersinga, W. J. (2021) · Immunity · doi:10.1016/j.immuni.2021.10.012 · Cited by 1,094
Melatonin: an ancient molecule that makes oxygen metabolically tolerable
Manchester, L. C., Coto‐Montes, A. M., Boga, J. A., Andersen, L. P. H., Zhou, Z., Galano, A., Vriend, J. P., Tan, D. X., & Reiter, R. J. (2015) · Journal of Pineal Research · doi:10.1111/jpi.12267 · Cited by 969
The Gut Microbiota Plays a Protective Role in the Host Defence Against Pneumococcal Pneumonia
Schuijt, T. J., Lankelma, J. M., Scicluna, B. P., de Sousa e Melo, F., Roelofs, J. J. T. H., de Boer, J. D., Hoogendijk, A. J., de Beer, R., de Vos, A., Belzer, C., et al. (2016) · Gut · doi:10.1136/gutjnl-2015-309728 · Cited by 832
Klebsiella pneumoniae infection biology: living to counteract host defences
Bengoechea, J. A., & Sá‐Pessoa, J. (2018) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuy043 · Cited by 605
Nutrition, immunity and COVID-19
Calder, P. C. (2020) · BMJ Nutrition Prevention & Health · doi:10.1136/bmjnph-2020-000085 · Cited by 612
The microbiome and critical illness
Dickson, R. P. (2016) · The Lancet Respiratory Medicine · doi:10.1016/s2213-2600(15)00427-0 · Cited by 460
The role of the lung microbiota and the gut–lung axis in respiratory infectious diseases
Dumas, A., Bernard, L., Poquet, Y., Lugo-Villarino, G., & Neyrolles, O. (2018) · Cellular Microbiology · doi:10.1111/cmi.12966 · Cited by 444
Lung microbiome: new insights into the pathogenesis of respiratory diseases
Li, R., Li, J., & Zhou, X. (2024) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-023-01722-y · Cited by 483
Colistin kills bacteria by targeting lipopolysaccharide in the cytoplasmic membrane
Sabnis, A., Hagart, K. L., Klöckner, A., Becce, M., Evans, L. E., Furniss, R. C. D., Mavridou, D. A. I., Murphy, R. A., Stevens, M. M., Davies, J. C., et al. (2021) · eLife · doi:10.7554/elife.65836 · Cited by 393
The Lung Microbiome, Immunity, and the Pathogenesis of Chronic Lung Disease
O’Dwyer, D. N., Dickson, R. P., & Moore, B. B. (2016) · The Journal of Immunology · doi:10.4049/jimmunol.1600279 · Cited by 362
The microbiota protects against respiratory infection via GM-CSF signaling
Brown, R. L., Sequeira, R. P., & Clarke, T. B. (2017) · Nature Communications · doi:10.1038/s41467-017-01803-x · Cited by 378
Self-citationThe role of the gut microbiota in sepsis
Haak, B. W., & Wiersinga, W. J. (2017) · The Lancet. Gastroenterology & hepatology · doi:10.1016/s2468-1253(16)30119-4 · Cited by 392
Integrative Physiology of Pneumonia
Quinton, L. J., Walkey, A. J., & Mizgerd, J. P. (2018) · Physiological Reviews · doi:10.1152/physrev.00032.2017 · Cited by 330
Microbiome effects on immunity, health and disease in the lung
Shukla, S. D., Budden, K. F., Neal, R., & Hansbro, P. M. (2017) · Clinical & Translational Immunology · doi:10.1038/cti.2017.6 · Cited by 287
Development of Upper Respiratory Tract Microbiota in Infancy is Affected by Mode of Delivery
Bosch, A. A. T. M., Levin, E., van Houten, M. A., Hasrat, R., Kalkman, G., Biesbroek, G., de Steenhuijsen Piters, W. A. A., de Groot, P.-K. C. M., Pernet, P., Keijser, B. J. F., et al. (2016) · EBioMedicine · doi:10.1016/j.ebiom.2016.05.031 · Cited by 276
Intestinal Microbiota of Mice Influences Resistance to Staphylococcus aureus Pneumonia
Gauguet, S., D'Ortona, S., Ahnger-Pier, K., Duan, B., Surana, N. K., Lu, R., Cywes-Bentley, C., Gadjeva, M., Shan, Q., Priebe, G. P., et al. (2015) · Infection and Immunity · doi:10.1128/iai.00037-15 · Cited by 208
Protective Microbiota: From Localized to Long-Reaching Co-Immunity
Chiu, L., Bazin, T., Truchetet, M., Schaeverbeke, T., Delhaès, L., & Pradeu, T. (2017) · Frontiers in Immunology · doi:10.3389/fimmu.2017.01678 · Cited by 208
Mechanisms and Targeted Therapies for Pseudomonas aeruginosa Lung Infection
Curran, C. S., Bolig, T. C., & Torabi‐Parizi, P. (2017) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.201705-1043so · Cited by 190
Commensal Bacteria: An Emerging Player in Defense Against Respiratory Pathogens
Khan, R. S., Petersen, F. C., & Shekhar, S. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2019.01203 · Cited by 167
The Beneficial Role of Probiotic Lactobacillus in Respiratory Diseases
Du, T., Lei, A., Zhang, N., & Zhu, C. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.908010 · Cited by 156
Vieira, A. T., Rocha, V. M., Tavares, L. P., Garcia, C. C., Teixeira, M. M., Oliveira, S. C., Cassali, G. D., Gamba, C. D. O., Martins, F. S., & Nicoli, J. R. (2015) · Microbes and Infection · doi:10.1016/j.micinf.2015.10.008 · Cited by 152
Depletion of Gut Microbiota Protects against Renal Ischemia-Reperfusion Injury
Emal, D., Rampanelli, E., Stroo, I., Butter, L. M., Teske, G. J. D., Claessen, N., Stokman, G., Florquin, S., Leemans, J. C., & Dessing, M. C. (2016) · Journal of the American Society of Nephrology · doi:10.1681/asn.2016030255 · Cited by 150
Louca, P., Murray, B. A. K., Kläser, K., Graham, M. S., Mazidi, M., Leeming, E. R., Thompson, E. J., Bowyer, R. C. E., Drew, D. A., Nguyen, L. H., et al. (2021) · BMJ Nutrition Prevention & Health · doi:10.1136/bmjnph-2021-000250 · Cited by 154
Symbiont-induced odorant binding proteins mediate insect host hematopoiesis
Benoit, J. B., Vigneron, A., Broderick, N. A., Wu, Y., Sun, J. S., Carlson, J. R., Aksoy, S., & Weiss, B. L. (2017) · eLife · doi:10.7554/elife.19535 · Cited by 137
Sequeira, R. P., McDonald, J. A. K., Marchesi, J. R., & Clarke, T. B. (2020) · Nature Microbiology · doi:10.1038/s41564-019-0640-1 · Cited by 136
Microbiota and host immune responses: a love–hate relationship
Tomkovich, S., & Jobin, C. (2015) · Immunology · doi:10.1111/imm.12538 · Cited by 132
Embracing the gut microbiota: the new frontier for inflammatory and infectious diseases
van den Elsen, L. W. J., Poyntz, H., Weyrich, L. S., Young, W., & Forbes‐Blom, E. (2017) · Clinical & Translational Immunology · doi:10.1038/cti.2016.91 · Cited by 131
Age-related changes in intestinal immunity and the microbiome
Walrath, T., Dyamenahalli, K. U., Hulsebus, H. J., McCullough, R. L., Idrovo, J., Boe, D. M., McMahan, R. H., & Kovacs, E. J. (2020) · Journal of Leukocyte Biology · doi:10.1002/jlb.3ri0620-405rr · Cited by 129
Calder, P. C., Ortega, E. F., Meydani, S. N., Adkins, Y. C., Stephensen, C. B., Thompson, B., & Zwickey, H. L. (2022) · Advances in Nutrition · doi:10.1093/advances/nmac052 · Cited by 133
Bacterial-Host Interactions: Physiology and Pathophysiology of Respiratory Infection
Håkansson, A., Orihuela, C. J., & Bogaert, D. (2018) · Physiological Reviews · doi:10.1152/physrev.00040.2016 · Cited by 129
Microbiomes in respiratory health and disease: An Asia‐Pacific perspective
Chotirmall, S. H., Gellatly, S. L., Budden, K. F., Aogáin, M. M., Shukla, S. D., Wood, D., Hugenholtz, P., Pethe, K., & Hansbro, P. M. (2017) · Respirology · doi:10.1111/resp.12971 · Cited by 125
Bronchiectasis: Current Concepts in Pathogenesis, Immunology, and Microbiology
Boyton, R. J., & Altmann, D. M. (2016) · Annual Review of Pathology Mechanisms of Disease · doi:10.1146/annurev-pathol-012615-044344 · Cited by 113
Galvão, I., Tavares, L. P., Corrêa, R. O., Fachi, J. L., Rocha, V. M., Rungue, M., Garcia, C. C., Cassali, G. D., Ferreira, C. M., Martins, F. S., et al. (2018) · Frontiers in Immunology · doi:10.3389/fimmu.2018.00142 · Cited by 112
The regulation of host defences to infection by the microbiota
Brown, R. L., & Clarke, T. B. (2016) · Immunology · doi:10.1111/imm.12634 · Cited by 106
Microbiota—myeloid cell crosstalk beyond the gut
Gorjifard, S., & Goldszmid, R. S. (2016) · Journal of Leukocyte Biology · doi:10.1189/jlb.3ri0516-222r · Cited by 100
Antibiotic-induced gut microbiota disruption during human endotoxemia: a randomised controlled study
Lankelma, J. M., Cranendonk, D. R., Belzer, C., de Vos, A. F., de Vos, W. M., van der Poll, T., & Wiersinga, W. J. (2016) · Gut · doi:10.1136/gutjnl-2016-312132 · Cited by 94
Wu, T. H., Xu, F., Su, C., Li, H., Lv, N., Liu, Y., Gao, Y., Lan, Y., & Li, J.-B. (2020) · Frontiers in Immunology · doi:10.3389/fimmu.2020.01331 · Cited by 96
Yitbarek, A., Taha-Abdelaziz, K., Hodgins, D. C., Read, L. R., Nagy, É., Weese, J. S., Caswell, J., Parkinson, J., & Sharif, S. (2018) · Scientific Reports · doi:10.1038/s41598-018-31613-0 · Cited by 91
Intestinal dysbiosis compromises alveolar macrophage immunity to Mycobacterium tuberculosis
Khan, N., Mendonca, L., Dhariwal, A., Fontès, G., Menzies, D., Xia, J., Divangahi, M., & King, I. L. (2019) · Mucosal Immunology · doi:10.1038/s41385-019-0147-3 · Cited by 97
Jordan, C. K. I., Brown, R. L., Larkinson, M. L. Y., Sequeira, R. P., Edwards, A. M., & Clarke, T. B. (2023) · Cell Host & Microbe · doi:10.1016/j.chom.2023.07.008 · Cited by 90
Hanly, J., Mitchell, M. J., Barnes, D. C., & MacMillan, L. (1994) · PubMed · Cited by 88
The microbiome: an integral player in immune homeostasis and inflammation in the respiratory tract
Perdijk, O., Azzoni, R., & Marsland, B. J. (2023) · Physiological Reviews · doi:10.1152/physrev.00020.2023 · Cited by 94
Commensal Microbiota Regulate Vertebrate Innate Immunity-Insights From the Zebrafish
Murdoch, C. C., & Rawls, J. F. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2019.02100 · Cited by 81
Microbiota-Derived Short-Chain Fatty Acids Promote LAMTOR2-Mediated Immune Responses in Macrophages
Wu, T., Li, H., Su, C., Xu, F., Yang, G., Sun, K., Xu, M., Lv, N., Meng, B., Liu, Y., et al. (2020) · mSystems · doi:10.1128/msystems.00587-20 · Cited by 78
Linking microbiota and respiratory disease
Hauptmann, M., & Schaible, U. E. (2016) · FEBS Letters · doi:10.1002/1873-3468.12421 · Cited by 77
Li, K.-L., Wang, B., Li, Z., Li, Y., & Liang, J. (2019) · World Journal of Pediatrics · doi:10.1007/s12519-019-00248-0 · Cited by 77
Joseph, L., Merciecca, T., Forestier, C., Balestrino, D., & Miquel, S. (2021) · Microorganisms · doi:10.3390/microorganisms9061282 · Cited by 82
Vareille-Delarbre, M., Miquel, S., Garcin, S., Bertran, T., Balestrino, D., Evrard, B., & Forestier, C. (2019) · Infection and Immunity · doi:10.1128/iai.00570-19 · Cited by 70
Crosstalk between gut microbiota and sepsis
Niu, M., & Chen, P. (2021) · Burns & Trauma · doi:10.1093/burnst/tkab036 · Cited by 69
Current Findings on Gut Microbiota Mediated Immune Modulation against Viral Diseases in Chicken
Abaidullah, M., Peng, S., Kamran, M., Song, X., & Yin, Z. (2019) · Viruses · doi:10.3390/v11080681 · Cited by 68
Chiu, Y.-C., Lee, S.-W., Liu, C.-W., Lan, T.-Y., & Wu, L. S.-H. (2022) · Respiratory Research · doi:10.1186/s12931-022-01928-8 · Cited by 69
Vignesh, R., Swathirajan, C. R., Tun, Z. H., Rameshkumar, M. R., Solomon, S. S., & Balakrishnan, P. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2020.607734 · Cited by 66
Morowitz, M. J., Caro, V. D., Pang, D., Cummings, J. L., Firek, B., Rogers, M. B., Ranganathan, S., Clark, R. S. B., & Aneja, R. K. (2017) · Critical Care Medicine · doi:10.1097/ccm.0000000000002291 · Cited by 61
Role of the Microbiome in Interstitial Lung Diseases
Chioma, O. S., Hesse, L. E., Chapman, A., & Drake, W. P. (2021) · Frontiers in Medicine · doi:10.3389/fmed.2021.595522 · Cited by 65
Stricker, S., Hain, T., Chao, C., & Rudloff, S. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23126791 · Cited by 64
Yitbarek, A., Alkie, T. N., Taha-Abdelaziz, K., Astill, J., Rodriguez-Lecompte, J. C., Parkinson, J., Nagy, É., & Sharif, S. (2018) · Beneficial Microbes · doi:10.3920/bm2017.0088 · Cited by 61
Gut-Lung Microbiota in Chronic Pulmonary Diseases: Evolution, Pathogenesis, and Therapeutics
Shi, C. Y., Yu, C.-H., Yu, W. Y., & Ying, H. (2021) · Canadian Journal of Infectious Diseases and Medical Microbiology · doi:10.1155/2021/9278441 · Cited by 59
The microbiome at the pulmonary alveolar niche and its role in Mycobacterium tuberculosis infection
Adami, A. J., & Cervantes, J. (2015) · Tuberculosis · doi:10.1016/j.tube.2015.07.004 · Cited by 56
Gut Microbiome and Organ Fibrosis
Costa, C. F. F. A., Sampaio‐Maia, B., Araújo, R., Nascimento, D. S., Ferreira‐Gomes, J., Pestana, M., Azevedo, M. J., & Alencastre, I. S. (2022) · Nutrients · doi:10.3390/nu14020352 · Cited by 53
The gut microbiota as a modulator of innate immunity during melioidosis
Lankelma, J. M., Birnie, E., Weehuizen, T. A. F., Scicluna, B. P., Belzer, C., Houtkooper, R. H., Roelofs, J. J. T. H., de Vos, A. F., van der Poll, T., Budding, A. E., et al. (2017) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0005548 · Cited by 50
Immunological design of commensal communities to treat intestinal infection and inflammation
Brown, R. L., Larkinson, M. L. Y., & Clarke, T. B. (2021) · PLoS Pathogens · doi:10.1371/journal.ppat.1009191 · Cited by 49
The role of the innate immune system on pulmonary infections
Galeas‐Pena, M., McLaughlin, N., & Pociask, D. A. (2018) · Biological Chemistry · doi:10.1515/hsz-2018-0304 · Cited by 48
Schlechte, J., Skalosky, I., Geuking, M. B., & McDonald, B. (2022) · Mucosal Immunology · doi:10.1038/s41385-022-00539-2 · Cited by 47
Denny, J. E., Powers, J. B., Castro, H. F., Zhang, J., Joshi‐Barve, S., Campagna, S. R., & Schmidt, N. W. (2019) · Scientific Reports · doi:10.1038/s41598-019-40266-6 · Cited by 47
Gut–Lung Axis: Microbial Crosstalk in Pediatric Respiratory Tract Infections
Zhu, W., Wu, Y., Liu, H., Jiang, C., & Huo, L. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.741233 · Cited by 49
Research advancements on the diversity and host interaction of gut microbiota in chickens
Yue, Y., Luasiri, P., Li, J., Laosam, P., & Sangsawad, P. (2024) · Frontiers in Veterinary Science · doi:10.3389/fvets.2024.1492545 · Cited by 47
Wang, J., Ishfaq, M., & Li, J. (2021) · Veterinary Immunology and Immunopathology · doi:10.1016/j.vetimm.2021.110192 · Cited by 44
Microbiome Modulation as a Novel Strategy to Treat and Prevent Respiratory Infections
Mindt, B. C., & DiGiandomenico, A. (2022) · Antibiotics · doi:10.3390/antibiotics11040474 · Cited by 47
Lung Microbiome Participation in Local Immune Response Regulation in Respiratory Diseases
Lira-Lucio, J. A., Falfán‐Valencia, R., Ramírez‐Venegas, A., Buendía-Roldán, I., Rojas‐Serrano, J., Mejía, M. E., & Pérez-Rubio, G. (2020) · Microorganisms · doi:10.3390/microorganisms8071059 · Cited by 45
Relationship between intestinal microbiota, diet and biological systems: an integrated view
Ferreira, R. D. S., Mendonça, L. A. B. M., Ribeiro, C. F. A., Calças, N. C., Guimarães, R. D. C. A., do Nascimento, V. A., Freitas, K. D. C., Carvalho, C. M. E., de Castro, A. P., & Franco, O. L. (2020) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2020.1836605 · Cited by 46
NOD1 in the interplay between microbiota and gastrointestinal immune adaptations
Fernández-García, V., González-Ramos, S., Martín‐Sanz, P., del Portillo, F. G., Laparra, J. M., & Boscá, L. (2021) · Pharmacological Research · doi:10.1016/j.phrs.2021.105775 · Cited by 41
Strategies for enhancing immunity against avian influenza virus in chickens: a review
Alqazlan, N. M., Astill, J., Raj, S., & Sharif, S. (2022) · Avian Pathology · doi:10.1080/03079457.2022.2054309 · Cited by 42
Microbial Programming of Systemic Innate Immunity and Resistance to Infection
Clarke, T. B. (2014) · PLoS Pathogens · doi:10.1371/journal.ppat.1004506 · Cited by 41
The influence of the commensal microbiota on distal tumor-promoting inflammation
Rosean, C. M. B., & Rutkowski, M. R. (2017) · Seminars in Immunology · doi:10.1016/j.smim.2017.06.002 · Cited by 40
Cheng, M., Chen, Y., Wang, L., Chen, W., Yang, L., Shen, G., Xu, T., Shen, G., Tian, Z., & Hu, S. (2017) · Scientific Reports · doi:10.1038/s41598-017-08264-8 · Cited by 38
The Human Respiratory Microbiome: Implications and Impact
Mitchell, A. B., & Glanville, A. R. (2018) · Seminars in Respiratory and Critical Care Medicine · doi:10.1055/s-0037-1617441 · Cited by 38
The Lung Microbiome: A Central Mediator of Host Inflammation and Metabolism in Lung Cancer Patients?
Weinberg, F. D., Dickson, R. P., Nagrath, D., & Ramnath, N. (2020) · Cancers · doi:10.3390/cancers13010013 · Cited by 41
How does the microbiota control systemic innate immunity?
Jordan, C. K. I., & Clarke, T. B. (2024) · Trends in Immunology · doi:10.1016/j.it.2023.12.002 · Cited by 40
Tang, Y., Chen, L., Yang, J., Zhang, S., Jin, J., & Yao, W. (2024) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2024.1392376 · Cited by 44
Novel cancer therapy targeting microbiome
Nagano, T., Otoshi, T., Hazama, D., Kiriu, T., Umezawa, K., Katsurada, N., & Nishimura, Y. (2019) · OncoTargets and Therapy · doi:10.2147/ott.s207546 · Cited by 36
Lipinksi, J. H., Ranjan, P., Dickson, R. P., & O’Dwyer, D. N. (2024) · The Journal of Immunology · doi:10.4049/jimmunol.2300716 · Cited by 37
Precision respiratory medicine and the microbiome
Rogers, G. B., & Wesselingh, S. L. (2015) · The Lancet Respiratory Medicine · doi:10.1016/s2213-2600(15)00476-2 · Cited by 35
Commensal Microbiome Promotes Resistance to Local and Systemic Infections
Zhang, N., & He, Q. (2015) · Chinese Medical Journal · doi:10.4103/0366-6999.162502 · Cited by 34
Balasubramanian, I., & Gao, N. (2017) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00330.2016 · Cited by 34
Shin, J. H., Gao, Y., Moore, J. H., Bolick, D. T., Kolling, G. L., Wu, M., & Warren, C. A. (2017) · The Journal of Infectious Diseases · doi:10.1093/infdis/jix414 · Cited by 33
Bacterial Gut Microbiota and Infections During Early Childhood
George, S., Aguilera, X., Gallardo, P., Farfán, M. J., Lucero, Y., Torres, J. P., Vidal, R. M., & O’Ryan, M. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.793050 · Cited by 32
Horizontal transmission of gut microbiota attenuates mortality in lung fibrosis
Gurczynski, S. J., Lipinski, J. H., Strauss, J., Alam, S., Huffnagle, G. B., Ranjan, P., Kennedy, L. H., Moore, B. B., & O’Dwyer, D. N. (2023) · JCI Insight · doi:10.1172/jci.insight.164572 · Cited by 32
Tosi, M., Coloretti, I., Meschiari, M., Biasi, S. D., Girardis, M., & Busani, S. (2024) · Antibiotics · doi:10.3390/antibiotics13050406 · Cited by 32
A Porcine Ex Vivo Lung Perfusion Model To Investigate Bacterial Pathogenesis
Dumigan, A., Fitzgerald, M., Sá‐Pessoa, J., Hamid, U. I., O’Kane, C. M., McAuley, D. F., & Bengoechea, J. A. (2019) · mBio · doi:10.1128/mbio.02802-19 · Cited by 30
Lankelma, J. M., Belzer, C., Hoogendijk, A. J., de Vos, A. F., de Vos, W. M., van der Poll, T., & Wiersinga, W. J. (2016) · Clinical and Translational Gastroenterology · doi:10.1038/ctg.2016.43 · Cited by 28
Singh, R. P., Kapoor, A., Sinha, A., Ma, Y., & Shankar, M. (2025) · The Microbe · doi:10.1016/j.microb.2025.100289 · Cited by 31
Gosens, R., Hiemstra, P. S., Adcock, I. M., Bracke, K. R., Dickson, R. P., Hansbro, P. M., Krauss‐Etschmann, S., Smits, H. H., Stassen, F. R. M., & Bartel, S. (2020) · European Respiratory Journal · doi:10.1183/13993003.02320-2019 · Cited by 28
Wang, J., Ishfaq, M., Fan, Q., Chen, C., & Li, J. (2020) · Veterinary Immunology and Immunopathology · doi:10.1016/j.vetimm.2020.110127 · Cited by 27
Chakraborty, P., Banerjee, D., Majumder, P., & Sarkar, J. (2024) · Medicine in Microecology · doi:10.1016/j.medmic.2024.100104 · Cited by 28
UGRP1-modulated MARCO+ alveolar macrophages contribute to age-related lung fibrosis
Chen, Y., Hao, X., Li, M., Tian, Z., & Cheng, M. (2023) · Immunity & Ageing · doi:10.1186/s12979-023-00338-8 · Cited by 25
Marascio, N., Scarlata, G. G. M., Romeo, F., Cicino, C., Trecarichi, E. M., Quirino, A., Torti, C., Matera, G., & Russo, A. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24119307 · Cited by 25
Bastos, H. N., Osório, N. S., Gagneux, S., Comas, I., & Saraiva, M. (2018) · Frontiers in Immunology · doi:10.3389/fimmu.2017.01948 · Cited by 23
Pulmonary and intestinal microbiota dynamics during Gram-negative pneumonia-derived sepsis
Wolff, N. S., Jacobs, M. C., Wiersinga, W. J., & Hugenholtz, F. (2021) · Intensive Care Medicine Experimental · doi:10.1186/s40635-021-00398-4 · Cited by 23
Therapeutic implications of SARS-CoV-2 dysregulation of the gut-brain-lung axis
Johnson, S. D., Olwenyi, O. A., Bhyravbhatla, N., Thurman, M., Pandey, K., Klug, E., Johnston, M., Dyavar, S. R., Acharya, A., Podany, A. T., et al. (2021) · World Journal of Gastroenterology · doi:10.3748/wjg.v27.i29.4763 · Cited by 24
Metadata
- Authors
- Clarke, T. B.
- Affiliations
- Imperial College London (GB)
- Corresponding author
- Clarke, Thomas B.
- ORCID
- Clarke, Thomas B.
- Venue
- Infection and Immunity
- Publisher
- American Society for Microbiology
- Published
- 2014-11
- Volume
- 82
- Issue
- 11
- Pages
- 4596-4606
- ISSN
- 0019-9567 (ISSN-L)
- 1098-5522
- PMC
- PMC4249320
- OpenAlex
- W2122379614
- Cited by
- 189
- References
- 69
- Citations by year
- 2026: 5 · 2025: 6 · 2024: 10 · 2023: 28 · 2022: 23 · 2021: 19 · 2020: 22 · 2019: 15 · 2018: 18 · 2017: 19 · 2016: 12 · 2015: 10 · 2014: 1
- FWCI
- 6.40
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Infection and Immunity (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Medical Research Council (MR/J006874/1)
- Topics
- Life Sciences › Immunology and Microbiology › Immunology › Immune Response and Inflammation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Life Sciences › Immunology and Microbiology › Immunology › Immune responses and vaccinations
- Keywords
- commensal microbiota, innate immunity, pulmonary infection, Klebsiella pneumoniae, NOD1, NOD2, muramyl dipeptide, Toll-like receptor ligands, alveolar macrophages, reactive oxygen species, microbiota depletion
- MeSH terms
- Acetylmuramyl-Alanyl-Isoglutamine, Animals, Gene Expression Regulation, Immunity, Innate, Intestines, Klebsiella Infections, Klebsiella pneumoniae, Ligands, Lung Diseases, Mice, Inbred C57BL, Symbiosis, Macrophages, Alveolar, Reactive Oxygen Species, Mice, Nod Signaling Adaptor Proteins
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review