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Molecular Evolution of a Type 1 Wild-Vaccine Poliovirus Recombinant during Widespread Circulation in China
Open accessAbstract
Type 1 wild-vaccine recombinant polioviruses were isolated from poliomyelitis patients in China from 1991 to 1993. We compared the sequences of 34 recombinant isolates over the 1,353-nucleotide (nt) genomic interval (nt 2480 to 3832) encoding the major capsid protein, VP1, and the protease, 2A. All recombinants had a 367-nt block of sequence (nt 3271 to 3637) derived from the Sabin 1 oral poliovirus vaccine strain spanning the 3′-terminal sequences of VP1 (115 nt) and the 5′ half of 2A (252 nt). The remaining VP1 sequences were closely (up to 99.5%) related to those of a major genotype of wild type 1 poliovirus endemic to China up to 1994. In contrast, the non-vaccine-derived sequences at the 3′ half of 2A were more distantly related (<90% nucleotide sequence match) to those of other contemporary wild polioviruses from China. The vaccine-derived sequences of the earliest (April 1991) isolates completely matched those of Sabin 1. Later isolates diverged from the early isolates primarily by accumulation of synonymous base substitutions (at a rate of ∼3.7 × 10 −2 substitutions per synonymous site per year) over the entire VP1-2A interval. Distinct evolutionary lineages were found in different Chinese provinces. From the combined epidemiologic and evolutionary analyses, we propose that the recombinant virus arose during mixed infection of a single individual in northern China in early 1991 and that its progeny spread by multiple independent chains of transmission into some of the most populous areas of China within a year of the initiating infection.
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“Onlythree substitutions (C472U in the IRES, C2034U encoding an S → F substitution at position 91 of VP3, and U2493C encoding an I → T substitution at position 6 of VP1) appear to be the main determinants of the attenuated phenotype (109, 126, 203)”
From VACCINE-DERIVED POLIOVIRUSES AND THE ENDGAME STRATEGY FOR GLOBAL POLIO ERADICATION (2005) · cites this paper as [109]
In the citing paper
“Interestingly, the bottlenecks driving the rapid evolution of polioviruses appear to occur primarily during replication in the human intestine (95, 109).”
From VACCINE-DERIVED POLIOVIRUSES AND THE ENDGAME STRATEGY FOR GLOBAL POLIO ERADICATION (2005) · cites this paper as [109]
Citations
Cites
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Saitou, N., & Nei, M. (1987) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040454 · Cited by 59,959
Kimura, M. (1980) · Journal of Molecular Evolution · doi:10.1007/bf01731581 · Cited by 29,778
PHYLIP-Phylogeny inference package (Version 3.2)
Felsenstein, J. (1989) · Cladistics · Cited by 17,682
Evolutionary trees from DNA sequences: A maximum likelihood approach.
Felsenstein, J. (1981) · Journal of Molecular Evolution · doi:10.1007/bf01734359 · Cited by 14,571
Tree View: An application to display phylogenetic trees on personal computers
Page, R. (1996) · Computer applications in the biosciences · doi:10.1093/bioinformatics/12.4.357 · Cited by 10,223
Dating of the human–ape splitting by a molecular clock of mitochondrial DNA.
Hasegawa, M., Kishino, H., & Yano, T.-A. (1985) · Journal of Molecular Evolution · doi:10.1007/bf02101694 · Cited by 8,687
Quartet Puzzling: A Quartet Maximum-Likelihood Method for Reconstructing Tree Topologies
Strimmer, K., & von Haeseler, A. (1996) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a025664 · Cited by 2,531
RNA VIRUS MUTATIONS AND FITNESS FOR SURVIVAL
Domingo, E., & Holland, J. J. (1997) · Annual Review of Microbiology · doi:10.1146/annurev.micro.51.1.151 · Cited by 1,514
Unbiased estimation of the rates of synonymous and nonsynonymous substitution
Li, W. (1993) · Journal of Molecular Evolution · doi:10.1007/bf02407308 · Cited by 1,088
Li, W., Wu, C., & Luo, C. C. (1985) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040343 · Cited by 1,053
Rates of spontaneous mutation among RNA viruses.
Drake, J. W. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.9.4171 · Cited by 730
Wimmer, E., Hellen, C. U. T., & Cao, X. (1993) · Annual Review of Genetics · doi:10.1146/annurev.ge.27.120193.002033 · Cited by 554
Evolution of the Zfx and Zfy genes: rates and interdependence between the genes.
Pamilo, P., & Bianchi, N. O. (1993) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040003 · Cited by 505
The mechanism of RNA recombination in poliovirus
Kirkegaard, K., & Baltimore, D. (1986) · Cell · doi:10.1016/0092-8674(86)90600-8 · Cited by 499
Complete nucleotide sequences of all three poliovirus serotype genomes
Toyoda, H., Kohara, M., Kataoka, Y., Suganuma, T., Omata, T., Imura, N., & Nomoto, A. (1984) · Journal of Molecular Biology · doi:10.1016/0022-2836(84)90084-6 · Cited by 415
Filman, D. J., Syed, R., Chow, M., Macadam, A. J., Minor, P. D., & Hogle, J. M. (1989) · The EMBO Journal · doi:10.1002/j.1460-2075.1989.tb03541.x · Cited by 364
Geographic distribution of wild poliovirus type 1 genotypes
Rico-Hesse, R., Pallansch, M. A., Nottay, B. K., & Kew, O. M. (1987) · Virology · doi:10.1016/0042-6822(87)90001-8 · Cited by 327
Self-citationComplete nucleotide sequence of the attenuated poliovirus Sabin 1 strain genome.
Nomoto, A., Omata, T., Toyoda, H., Kuge, S., Horie, H., Kataoka, Y., Genba, Y., Nakano, Y., & Imura, N. (1982) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.79.19.5793 · Cited by 308
Genetic recombination with newcastle disease virus, polioviruses, and influenza
Hirst, G. K. (1962) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.1962.027.001.028 · Cited by 269
Evidence of recombination among enteroviruses
Santti, J., Hyypiä, T., Kinnunen, L., & Salminen, M. (1999) · Journal of Virology · doi:10.1128/jvi.73.10.8741-8749.1999 · Cited by 259
Prolonged replication of a type 1 vaccine-derived poliovirus in an immunodeficient patient
Kew, O. M., Sutter, R. W., Nottay, B. K., McDonough, M. J., Prevots, D. R., Quick, L., & Pallansch, M. A. (1998) · Journal of Clinical Microbiology · doi:10.1128/jcm.36.10.2893-2899.1998 · Cited by 213
Self-citationNatural genetic exchanges between vaccine and wild poliovirus strains in humans.
Guillot, S., Caro, V., Cuervo, N., Korotkova, E., Combiescu, M., Persu, A., Aubert-Combiescu, A., Delpeyroux, F., & Crainic, R. (2000) · Journal of Virology · doi:10.1128/jvi.74.18.8434-8443.2000 · Cited by 202
Antigenic Structure of Picornaviruses
Minor, P. D. (1990) · Current topics in microbiology and immunology · doi:10.1007/978-3-642-75602-3_5 · Cited by 189
Martín, J., Dunn, G., Hull, R., Patel, V., & Minor, P. D. (2000) · Journal of Virology · doi:10.1128/jvi.74.7.3001-3010.2000 · Cited by 160
Molecular epidemiology of polioviruses
Kew, O. M., Mulders, M. N., Lipskaya, G. Y., da Silva, E. E., & Patlansch, M. A. (1995) · Seminars in Virology · doi:10.1016/s1044-5773(05)80017-4 · Cited by 157
Self-citationGavrilin, G. V., Cherkasova, E. A., Lipskaya, G. Y., Kew, O. M., & Agol, V. I. (2000) · Journal of Virology · doi:10.1128/jvi.74.16.7381-7390.2000 · Cited by 138
Self-citationA genetic map of poliovirus temperature-sensitive mutants
Cooper, P. D. (1968) · Virology · doi:10.1016/0042-6822(68)90287-0 · Cited by 124
Intertypic genomic rearrangements of poliovirus strains in vaccinees
Cammack, N. C., Phillips, A., Dunn, G., Patel, V., & Minor, P. D. (1988) · Virology · doi:10.1016/0042-6822(88)90113-4 · Cited by 111
Intertypic genomic rearrangements of poliovirus strains in vaccinees
CAMMACK, N., PHILLIPS, A., DUNN, G., PATEL, V, & MINOR, P. (1988) · Virology · doi:10.1016/s0042-6822(88)90113-4 · Cited by 111
Lipskaya, G. Y., Muzychenko, A. R., Kutitova, O. K., Maslova, S. V., Equestre, M., Drozdov, S. G., Bercoff, R. P., & Agol, V. I. (1991) · Journal of Medical Virology · doi:10.1002/jmv.1890350415 · Cited by 97
Yang, C.-F., De, L., Su-Ju, Y., Gómez, J. R., Cruz, J., Holloway, B. P., Pallansch, M. A., & Kew, O. M. (1992) · Virus Research · doi:10.1016/0168-1702(92)90124-r · Cited by 94
Self-citationBENYESH-MELNICK, M., MELNICK, J. L., RAWLS, W. E., WIMBERLY, I., ORO, J. B., BEN-PORATH, E., & RENNICK, V. (1967) · American Journal of Epidemiology · doi:10.1093/oxfordjournals.aje.a120717 · Cited by 93
de la Torre, J. C., Giachetti, C., Semler, B. L., & Holland, J. J. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.7.2531 · Cited by 82
Intertypic recombination in poliovirus: Genetic and biochemical studies
Tolskaya, E. A., Romanova, L. A., Kolesnikova, M. S., & Agol, V. I. (1983) · Virology · doi:10.1016/0042-6822(83)90295-7 · Cited by 77
Identification of vaccine-related polioviruses by hybridization with specific RNA probes
De, L., Nottay, B. K., Yang, C. F., Holloway, B. P., Pallansch, M. A., & Kew, O. M. (1995) · Journal of Clinical Microbiology · doi:10.1128/jcm.33.3.562-571.1995 · Cited by 76
Self-citationKing, A. M. Q. (1988) · Nucleic Acids Research · doi:10.1093/nar/16.24.11705 · Cited by 75
Molecular evolution of the major capsid protein VP1 of enterovirus 70
Takeda, N., Tanimura, M., & Miyamura, K. (1994) · Journal of Virology · doi:10.1128/jvi.68.2.854-862.1994 · Cited by 74
Recombination and Other Genomic Rearrangements in Picornaviruses
Agol, V. I. (1997) · Seminars in Virology · doi:10.1006/smvy.1997.0112 · Cited by 66
Tripartite genome organization of a natural type 2 vaccine/nonvaccine recombinant poliovirus
Georgescu, M., Delpeyroux, F., & Crainic, R. (1995) · Journal of General Virology · doi:10.1099/0022-1317-76-9-2343 · Cited by 64
Krebs, O., & Marquardt, O. (1992) · Journal of General Virology · doi:10.1099/0022-1317-73-3-613 · Cited by 42
Li, J., Zhang, L. B., Yoneyama, T., Yoshida, H., Shimizu, H., Yoshii, K., Hara, M., Nomura, T., Yoshikura, H., Miyamura, T., et al. (1996) · Archives of Virology · doi:10.1007/bf01718608 · Cited by 40
Self-citationDistribution of Wild Type 1 Poliovirus Genotypes in China
Zheng, D.-P., Zhang, L.-B., Fang, Z. Y., Yang, C., Mulders, M. N., Pallansch, M. A., & Kew, O. M. (1993) · The Journal of Infectious Diseases · doi:10.1093/infdis/168.6.1361 · Cited by 29
Self-citationVaccine-associated cases of poliomyelitis over a 30 year period in East Germany
Driesel, G., Diedrich, S., Künkel, U., & Schreier, E. (1995) · European Journal of Epidemiology · doi:10.1007/bf01720298 · Cited by 25
Status of the Eradication of Indigenous Wild Poliomyelitis in the People's Republic of China
Wang, K.-A., Zhang, L.-B., Otten, M. W., Zhang, X., Chiba, Y., Zhang, R.-Z., Xu, T., Liu, X., Liu, M., Li, Q.-L., et al. (1997) · The Journal of Infectious Diseases · doi:10.1093/infdis/175.supplement_1.s105 · Cited by 24
Self-citationYANG, B., Zhang, J., Otten, M. W., Kusumoto, K., Jiang, T., Zhang, R., Zhang, L., & Wang, K. R. (1995) · The Pediatric Infectious Disease Journal · doi:10.1097/00006454-199504000-00011 · Cited by 22
Self-citationSurveillance for Polio Eradication in the People's Republic of China
Zhang, J., Zhang, L.-B., Otten, M. W., Jiang, T., Zhang, X., Zhang, R.-Z., & Wang, K.-A. (1997) · The Journal of Infectious Diseases · doi:10.1093/infdis/175.supplement_1.s122 · Cited by 17
Self-citationGenotype-specific RNA probes for direct identification of wild polioviruses by blot hybridization
De, L., Yang, C. F., Silva, E. D., Boshell, J., Cáceres, P., Gómez, J. R., Pallansch, M. A., & Kew, O. M. (1997) · Journal of Clinical Microbiology · doi:10.1128/jcm.35.11.2834-2840.1997 · Cited by 15
Self-citationGenetic analysis of wild-type 1 poliovirus isolates in China, 1985–1993
Li, J., Yoneyama, T., Yoshida, H., Yoshii, K., Shimizu, H., Miyamura, T., Hara, M., Hou, X., Zheng, H., Fang, Y., et al. (1995) · Research in Virology · doi:10.1016/0923-2516(96)80901-0 · Cited by 8
Self-citation
Research works printed but not linked: 1
- Zheng D.-P. Zhang L.-B. Hou X.-H. Zhu H. Otten M. Kilpatrick D. R. Pallansch M. A. Kew O. M. Molecular epidemiology of poliovirus in China in the epidemic period of 1989–1994.Chin. J. Virol. 12 1995 289 298
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Self-citationKew, O., Morris-Glasgow, V., Landaverde, M., Burns, C., Shaw, J., Garib, Z., André, J., Blackman, E., Freeman, C. J., Jorba, J., et al. (2002) · Science · doi:10.1126/science.1068284 · Cited by 600
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Metadata
- Authors
- Liu, H.-M., Zheng, D.-P., Zhang, L.-B., Oberste, M. S., Pallansch, M. A., & Kew, O. M.
- Affiliations
- <!--label omitted: 1-->Division of Viral and Rickettsial Diseases, National Center for Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia 30333,1 and
- Centers for Disease Control and Prevention (US)
- <!--label omitted: 3-->National Poliovirus Reference Center, Institute of Virology, Chinese Academy of Preventive Medicine, Beijing 100052,3 People's Republic of China
- Venue
- Journal of Virology
- Publisher
- American Society for Microbiology
- Published
- 2000-12
- Volume
- 74
- Issue
- 23
- Pages
- 11153-11161
- ISSN
- 0022-538X (ISSN-L)
- 1098-5514
- PMC
- PMC113202
- OpenAlex
- W1993390912
- Cited by
- 119
- References
- 47
- Citations by year
- 2026: 1 · 2024: 2 · 2023: 2 · 2022: 1 · 2021: 1 · 2020: 1 · 2019: 3 · 2018: 1 · 2017: 2 · 2016: 2 · 2015: 4 · 2014: 5 · 2013: 5 · 2012: 7
- FWCI
- 5.18
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Journal of Virology (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Centers for Disease Control and Prevention
- Topics
- Health Sciences › Medicine › Infectious Diseases › Viral Infections and Immunology Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Health Sciences › Medicine › Epidemiology › Virology and Viral Diseases
- Keywords
- poliovirus type 1, molecular evolution, VP1, 2A protease, synonymous substitutions, co-infection, poliomyelitis, China
- MeSH terms
- Base Sequence, Capsid, Cysteine Endopeptidases, Biological Evolution, Molecular Sequence Data, Recombination, Genetic, Viral Proteins, Poliovirus, Capsid Proteins
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