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Phosphorylation Meets Ubiquitination: The Control of NF-κB Activity
Abstract
NF-kappaB (nuclear factor-kappaB) is a collective name for inducible dimeric transcription factors composed of members of the Rel family of DNA-binding proteins that recognize a common sequence motif. NF-kappaB is found in essentially all cell types and is involved in activation of an exceptionally large number of genes in response to infections, inflammation, and other stressful situations requiring rapid reprogramming of gene expression. NF-kappaB is normally sequestered in the cytoplasm of nonstimulated cells and consequently must be translocated into the nucleus to function. The subcellular location of NF-kappaB is controlled by a family of inhibitory proteins, IkappaBs, which bind NF-kappaB and mask its nuclear localization signal, thereby preventing nuclear uptake. Exposure of cells to a variety of extracellular stimuli leads to the rapid phosphorylation, ubiquitination, and ultimately proteolytic degradation of IkappaB, which frees NF-kappaB to translocate to the nucleus where it regulates gene transcription. NF-kappaB activation represents a paradigm for controlling the function of a regulatory protein via ubiquitination-dependent proteolysis, as an integral part of a phosphorylationbased signaling cascade. Recently, considerable progress has been made in understanding the details of the signaling pathways that regulate NF-kappaB activity, particularly those responding to the proinflammatory cytokines tumor necrosis factor-alpha and interleukin-1. The multisubunit Ika…
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“Because of its ability to regulate the expression of inflammatory proteins, NFκB is believed to play a major role in the inflammatory process.”
From Thymosin beta 4 suppression of corneal NFκB: A potential anti-inflammatory pathway (2007) · cites this paper as Karin and Ben-Neriah, 2000
In the citing paper
“NFκB-induced gene expression requires that NFκB not only becomes activated, but it must also be phosphorylated and must physically translocate from cytoplasm to the nucleus (Karin and Ben-Neriah, 2000).”
From Thymosin beta 4 suppression of corneal NFκB: A potential anti-inflammatory pathway (2007) · cites this paper as Karin and Ben-Neriah, 2000
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Deciphering the enigma: long noncoding RNAs in disease pathogenesis and therapeutic prospects
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“Activation leads to the phosphorylation and degradation of IκB proteins by the IκB kinase (IKK) complex, resulting in the release and nuclear translocation of active NF-κB dimers, often including the p50 and RelA (p65) subunits, to activate gene transcription [27].”
Mechanisms and targeted treatments of cobalt-encephalopathy from cobalt-chromium orthopedic implants
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PPP6R3-mediated dephosphorylation regulates mRNA translation during spermatogonial differentiation
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“Five NF-k B subunits, p50, p52, RelA (p65), RelB and c-Rel assemble into hetero-or homo-dimers in a context-dependent manner with the RelA/p50 heterodimer being the most common form functioning in the classical NF-k B pathway (3, 4).”
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“When stimuli activating NF-κ B are present in the environment, the nuclear translocation of NF-κ B and activation of gene transcription occur [12].”
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“…innate immune receptor triggering (Janeway and Medzhitov, 2002; Thaiss et al, 2016), signals transduced by multiple kinases (Arthur and Ley, 2013; Karin and Ben-Neriah, 2000; O ’ Shea et al, 2015; Sharma et al, 2003) activate transcription factors (TFs) such as NF-kB, IRF, STAT, and AP-1 family…”
High-throughput prioritization of target proteins for development of new antileishmanial compounds
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Adipose Tissue Macrophage-Mediated Inflammation in Obesity: A Link to Posttranslational Modification
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“This phosphorylation usually isolates NF-κB and prevents it from entering the nucleus (Karin and Ben-Neriah 2000; Viatour et al. 2005).”
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“TLR4 is one of the toll-like receptors (TLRs) found on the cell surface of immunological and vascular cells, smooth muscle cells, and inflammatory cells (Mitsui et al. 2020).”
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Effects of KMS on the DNCB induced animal Model of Atopic Dermartitis
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Linear ubiquitin chain induces apoptosis and inhibits tumor growth
Qin, Z., Jiang, W., Wang, G., Sun, Y., & Xiao, W. (2017) · APOPTOSIS · doi:10.1007/s10495-017-1433-8 · Cited by 2
The serum Arginase-1 correlation to child-pugh scores in predicting the severity of cirrhosis
Purnamaningsih, S. M. (2017) · doi:10.15562/bmj.v6i3.685 · Cited by 2
Postlactational Involution: Molecular Mechanisms and Relevance for Breast Cancer Development
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“Interestingly, the decreased phosphorylation of STAT3 and MAPKs in PIP macrophages was associated with a concomitant suppression of NF-κB phosphorylation, which is a critical transcription factor that controls the induction of several immune genes including those involved in the production of pro-inflammatory cytokine…”
BackgroundLin, F., Lin, H., Yu, J., Ge, C., Mao, L., Zhang, S.-H., Jin, Y.-Z., Wu, Y.-Y., Chen, T.-Y., Li, J.-J., et al. (2026) · Advancement of science · doi:10.1002/advs.77502 · Cited by 1
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“Given that NF-κB is a canonical driver of NLRP3 priming [ 34 , 35] and that its activation requires ATP-dependent phosphorylation [ 36], we next investigated whether this "metabolic exhaustion" interferes with the priming pathway.”
Cai, Y., Wang, X., Feng, J., & E, C. (2026) · Antioxidants and Redox Signaling · doi:10.1177/15230864261443868 · Cited by 1
“TNFAIP3 limits in fl ammatory responses via negative regulation of NF-j B (Zhou et al., 2016), while CHUK encodes IKK a , a pivotal upstream kinase in NF-j B activation (Karin and Ben-Neriah, 2000).”
The role of e3 ubiquitin ligases and deubiquitinating enzymes in hepatocellular carcinoma
Wang, L., Zhang, H., Hu, Y., Li, X., Liu, J., & Liang, Y. (2026) · Cell Biology and Toxicology · doi:10.1007/s10565-026-10192-1 · Cited by 1
“In HCC, abnormal IKK activation may induce persistent activation of the NF-κB signaling axis, thereby promoting inflammation and tumorigenesis (Napetschnig and Wu 2013; Karin and Ben-Neriah 2000).”
Wang, J.-G., Ito, S., Hosokawa, D., Nihira, K., Decano, J., Lee, L. H., Higashi, H., Halu, A., Mattson, P. C., Amaral, G., et al. (2026) · Frontiers in Immunology · doi:10.3389/fimmu.2026.1776849 · Cited by 1
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NEMO/IKKγ: Emerging player in the NF-κB pathway and potential therapeutic target in inflammation
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“A phospho-dependent DpSGxxpS/T βTrCP degron motif of IκB proteins [41] is directly phosphorylated by the IKKβ subunit, and IKKα also plays a role in kinase activation through phosphorylating the IKKβ activation loop [42].”
Chen, K., Deng, Y., Meng, W., Xie, C., Li, Q., Wang, F., Zhu, J., Liu, J.-Y., Bie, M., & Han, F. (2026) · Journal of Hazardous Materials Advances · doi:10.1016/j.hazadv.2026.101114 · Cited by 1
Signaling pathways and potential therapeutic agents in trastuzumab-induced cardiotoxicity
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“The Rela gene, which encodes the p65 subunit of NF j B, plays critical roles in inflammation, immune response [67,68], cell survival [69], proliferation [70], and apoptosis.”
Arutkumaran, S., Deb, R., Shanmathi, S., Sengar, G., Chakravarti, S., Das, P. J., Pegu, S., Reis, A., & Gupta, V. K. (2025) · Microbial Pathogenesis · doi:10.1016/j.micpath.2025.108119 · Cited by 1
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Mesenchymal stem cells suppress NF-κB and ERK signalling while enhancing chemotaxis in CD4+ T cells
Sengun, E., Fröberg, J., He, X., Eleveld, M. J., Smeets, R. L., Koenen, H. J. P. M., Möller‐Hackbarth, K., Wolfs, T. G. A. M., Ophelders, D. R. M. G., Huynen, M. A., et al. (2025) · Scientific Reports · doi:10.1038/s41598-025-14373-6 · Cited by 2
“NFKBIA encodes an inhibitor of NF-κB pathway, which prevents NF-κB dimers from phosphorylating and translocating to the nucleus, thereby reducing NF-κB activity 48,49 .”
Zhang, Y., Xu, J., Zhang, X., Zheng, J., & Cui, Z. (2025) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2025.146854 · Cited by 2
Molecular characterization of Mumps virus circulating in Odisha in 2024.
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“Then inflammation happens [61, 62].”
Transcription factor addictions: exploring the potential Achilles’ Heel of endometriosis
Yang, Y., Du, Y., Ma, X., Yuan, G., Li, G., Zhang, Q., & Zhou, S. (2025) · Science China Life Sciences · doi:10.1007/s11427-024-2832-8 · Cited by 1
“Inactive NF-κ B dimers are sequestered in the cytoplasm by a family of I κ B proteins, and I κ B phosphorylated by I κ B kinases (IKKs) releases NF-κ B, enabling its translocation into the nucleus and exerting its transcriptional function (Karin and Ben-Neriah, 2000).”
Xu, L., Huang, J., Wang, R., Feng, J., Wang, L., Li, N., Jin, M., Lin, H., & Chen, X. (2025) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2025.110292 · Cited by 1
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“The IκB kinase (IKK) complex is essential for activating NF-κB signalling in response to various stimuli, such as those derived from RNA or DNA [19, 20].”
CD40 induces PIR-A+ macrophages to promote chronic allograft rejection.
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“This releases NF-κ B and allows it to translocate freely to the nucleus in a phosphorylated form to activate gene transcription (Karin & Ben-Neriah, 2000; Perkins, 2007).”
Qi, D., Ai, W.-X., Han, B.-W., Men, H.-Z., Liang, M.-G., Zhang, M.-S., Zhou, H., Qiao, Y., Zhang, T.-T., Li, D., et al. (2024) · Journal of Herbal Medicine · doi:10.1016/j.hermed.2024.100963 · Cited by 1
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“7,8 Chemo-preventive phytochemicals can block or reverse the premalignant stage (initiation and promotion) of the multistep carcinogenesis.”
BackgroundDrosophila innate immunity suppresses the survival of xenografted mammalian tumor cells
Aida, A., Yuswan, K., Kawai, Y., Hasegawa, K., Nakajima, Y.-I., & Kuranaga, E. (2023) · Scientific Reports · doi:10.1038/s41598-023-38489-9 · Cited by 2
Detection of hypoxia in the pulmonary tissues of Xenopus laevis over repeated dives
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“Yellow arrows indicate regions that are strongly stained with eosin; these represent edema-like features, such as the swelling of cells and stroma and apoptosis with an increased vascular permeability (Karin & Ben-Neriah, 2000).”
BackgroundEffects of constitutively active IKKβ on cardiac development.
Sugioka, S., Ikeda, S., Harada, M., Kishihata, M., Al-Huseini, I., Kimura, T., & Ashida, N. (2022) · Biochemical and Biophysical Research Communications - BBRC · doi:10.1016/j.bbrc.2022.05.019 · Cited by 1
Effect of Sperm 26S Proteasome on Embryo Formation and Development in In Vitro Fertilization
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Activity of nuclear factor κB in lymphocyte populations of children with psoriasis
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“Under physiological conditions, the NF-κB/I-κB complex is a self-regulating system [22].”
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“3에 나타난 바와 같이 LPS에 의해 IL-1β, IL-6, TNF-α 모 두 발현이 증가하였으나, IL-β와 IL-6는 꽃봉오리 및 과실 추출물에 의해 발현이 현저하게 감소하였고 TNF-α는 과 실 추출물에 의해 발현이 현저하게 감소하였다.”
InfluentialJiang, L., Liu, M.-N., Wang, G.-D., Wu, Q., & Zhao, Y.-F. (2020) · Growth Factors · doi:10.1080/08977194.2020.1755280 · Cited by 1
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“Indeed, reciprocal influences of phosphorylation and ubiquitination on common targets are a common regulatory feature in a variety of signaling systems (Haglund and Dikic, 2005; Karin and Ben-Neriah, 2000; Kawabe and Brose, 2011).”
BackgroundAnimal Models of Obesity Characterized by Non-alcoholic Fatty Liver Disease (NAFLD)
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“NF‑ κ B is a dimeric transcription factor that belongs to the Rel/NF‑ κ B family and is formed by hetero-or homodimerization (13).”
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“Importantly, dimer abundance is dynamically regulated by synthesis, precursor processing, IκB binding, nuclear transport, DNA occupancy and feedback loops [1, 10, 11].”
Park, C., & Lee, J.-R. (2026) · Molecular and Cellular Biochemistry · doi:10.1007/s11010-026-05751-3
Hu, Y.-X., Chen, Z.-X., Luo, D., Tang, Z.-Q., Jiang, S.-Y., Pan, J.-B., Zhao, Y.-Z., Wang, J.-L., & Pan, Y.-X. (2026) · Foods · doi:10.3390/foods15193446
“NF-κ B controls numerous genes associated with immunity and inflammation [151]; its sustained hyperactivation contributes to chronic inflammatory processes [152].”
Metadata
- Authors
- Karin, M., & Ben-Neriah, Y.
- Affiliations
- Hebrew University of Jerusalem (IL)
- Department of Pharmacology, Laboratory of Gene Regulation and Signal Transduction University of California, San Diego, La Jolla, California, 92093-0636;
- ORCID
- Karin, Michael
- Venue
- Annual Review of Immunology
- Publisher
- Annual Reviews
- Published
- 2000-04
- Volume
- 18
- Issue
- 1
- Pages
- 621-663
- ISSN
- 0732-0582 (ISSN-L)
- 1545-3278
- OpenAlex
- W2147921405
- Cited by
- 4,766
- References
- 243
- Citations by year
- 2026: 78 · 2025: 109 · 2024: 86 · 2023: 101 · 2022: 114 · 2021: 112 · 2020: 129 · 2019: 114 · 2018: 129 · 2017: 153 · 2016: 156 · 2015: 135 · 2014: 186 · 2013: 201 · 2012: 194
- FWCI
- 22.12
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Annual Review of Immunology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Cancer Institute (R01 CA76188, R01CA076188)
- National Institute of Allergy and Infectious Diseases (R01AI043477, R01 AI43477)
- National Institute of Environmental Health Sciences (R37ES004151, R37 ES04151)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › NF-κB Signaling Pathways
- Life Sciences › Immunology and Microbiology › Immunology › Immune Response and Inflammation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Signaling Pathways in Disease
- Keywords
- NF-κB, IκB phosphorylation, ubiquitination, IκB kinase, IKKα, IKKβ, E3 ubiquitin ligase, proteolysis, NF-κB nuclear translocation, TNF signaling, IL-1 signaling, Rel family transcription factors, inflammation, transcriptional regulation
- MeSH terms
- NF-KappaB Inhibitor alpha, Amino Acid Sequence, Animals, DNA-Binding Proteins, Humans, Molecular Sequence Data, Phosphorylation, Transcription Factors, Ubiquitins, Signal Transduction, Down-Regulation, NF-kappa B, Protein Serine-Threonine Kinases, I-kappa B Proteins, I-kappa B Kinase, NF-kappa B p50 Subunit
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