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Phosphorylation Meets Ubiquitination: The Control of NF-κB Activity
Abstract
NF-kappaB (nuclear factor-kappaB) is a collective name for inducible dimeric transcription factors composed of members of the Rel family of DNA-binding proteins that recognize a common sequence motif. NF-kappaB is found in essentially all cell types and is involved in activation of an exceptionally large number of genes in response to infections, inflammation, and other stressful situations requiring rapid reprogramming of gene expression. NF-kappaB is normally sequestered in the cytoplasm of nonstimulated cells and consequently must be translocated into the nucleus to function. The subcellular location of NF-kappaB is controlled by a family of inhibitory proteins, IkappaBs, which bind NF-kappaB and mask its nuclear localization signal, thereby preventing nuclear uptake. Exposure of cells to a variety of extracellular stimuli leads to the rapid phosphorylation, ubiquitination, and ultimately proteolytic degradation of IkappaB, which frees NF-kappaB to translocate to the nucleus where it regulates gene transcription. NF-kappaB activation represents a paradigm for controlling the function of a regulatory protein via ubiquitination-dependent proteolysis, as an integral part of a phosphorylationbased signaling cascade. Recently, considerable progress has been made in understanding the details of the signaling pathways that regulate NF-kappaB activity, particularly those responding to the proinflammatory cytokines tumor necrosis factor-alpha and interleukin-1. The multisubunit Ika…
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“Because of its ability to regulate the expression of inflammatory proteins, NFκB is believed to play a major role in the inflammatory process.”
From Thymosin beta 4 suppression of corneal NFκB: A potential anti-inflammatory pathway (2007) · cites this paper as Karin and Ben-Neriah, 2000
In the citing paper
“NFκB-induced gene expression requires that NFκB not only becomes activated, but it must also be phosphorylated and must physically translocate from cytoplasm to the nucleus (Karin and Ben-Neriah, 2000).”
From Thymosin beta 4 suppression of corneal NFκB: A potential anti-inflammatory pathway (2007) · cites this paper as Karin and Ben-Neriah, 2000
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“NF-κB activation via GPCR-dependent IκB kinase pathways induces transcription of pro-inflammatory cytokines, chemokines, complement components and adhesion molecules in microglia and astrocytes, thereby amplifying and propagating inflammatory states [41, 42].”
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“The fi rst one, known as the canonical NF-κ B activation pathway, mainly applies to RelA-and/ or cRel-containing complexes [12].”
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Agrawal, R., Ghosh, S., Kumar, N., Mukherjee, C., Sharma, V., Arun, R., Deb, R., Sarkar, S., Savita, Kumar, D., et al. (2026) · Cell Death and Disease · doi:10.1038/s41419-026-08846-3
“In addition, luciferase assays were carried out on the MALT promoter in Raji expressing cells shControl or shBLM and also in isogenic HEK293T cells transduced with either BLM sgRNA or vector (TLCV2).”
Noh, J., Park, K.-H., Pitisopa, F., Sirikolo, M. Q., Kim, J. J., Suh, S., & Seo, J. B. (2026) · Genes & Genomics · doi:10.1007/s13258-026-01769-5
“The regulation of iNOS, COX-2, and proinflammatory cytokines is closely associated with intracellular signaling pathways, particularly MAPKs and NF-κB (Arthur and Ley 2013; Karin and Ben-Neriah 2000).”
Connell, S., Rathakrishnan, A., Wells, J., Dixon, L. K., & Reis, A. L. (2026) · npj Viruses · doi:10.1038/s44298-026-00191-8
“Plasmidsexpressing IKK α and IKK β , the key kinases which phosphorylate I κ B α , leading to its degradation and release of the NF κ B transcription factor 37,38 , induced luciferase activity driven by the reporter construct.”
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Doi, Y., Shimada, K., Watanabe, Y., Uehara, O., Yoshida, K., Kageyama, T., Kawahara, Y., Abiko, Y., & Murakami, S. (2026) · Odontology : official journal of The Society of the Nippon Dental University · doi:10.1007/s10266-026-01361-z
Crosstalk between protein lipidation and ubiquitination in tumor biology
Liao, J., Huang, Q., Yang, Z., Zou, M., Ren, J., Fang, R., Wen, J., Gao, Y., Peng, J., & Hao, L. (2026) · APOPTOSIS · doi:10.1007/s10495-026-02277-3
“In contrast, linear ubiquitin chains specifically control NF-κB pathway activation [ 14– 16 ].”
SLCO2B1 ameliorates chronic kidney disease by suppressing NF-κB inflammatory signaling
Luo, H., Huang, S.-K., Shen, H., & Xie, Y. (2026) · Gene Reports · doi:10.1016/j.genrep.2026.102488
Negative regulation of the NF-κB pathway by the ubiquitin ligase Nedd4-1(NE)
Persaud, A. K., Kefalas, G., Shteiman-Kotler, A., Priya, A., Liang, H., Melnyk, R. A., Astori, A., Raught, B., & Rotin, D. (2026) · Communications Biology · doi:10.1038/s42003-026-09634-7
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“44 With advances in medicine and high-tech innovations, research on PI3K/Akt signaling substrates and drug development targeting the PI3K/Akt pathway will continue to mature.”
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Purohit, K. J., Solanki, H., Mishra, A., Shelke, A., Navale, A. M., & Wakchaure, R. S. (2025) · Journal of Natural Remedies · doi:10.18311/jnr/2025/51070
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Lee, Y.-H., You, M., Lee, E.-C., & Kim, H.-A. (2025) · Food Science and Biotechnology · doi:10.1007/s10068-025-01983-z
“NF-ĸB is a pivotal transcription factor involved in immunomodulation and inflammatory response, and its activation is closely associated with the expression of inflammatory mediators (Karin and Ben-Neriah, 2000).”
Park, K. A., Byun, H., Ha, J., Kim, C., Sohn, K.-C., Shin, S., Park, C.-Y., Cho, Y.-J., Lee, I., & Hur, G. M. (2025) · Biomolecules & Therapeutics · doi:10.4062/biomolther.2025.099
“IKK is a central regulatory node for NF-κ B activation down-stream of various stimuli, including TNFR1, toll like receptor 4 (TLR4), interleukin-1 β receptor (IL-1R), DNA damage and reactive oxygen species (Häcker and Karin 2006; Hur et al ., 2003; Karin and Ben-Neriah, 2000).”
Li, X., Jiang, S., Hai-li, L., Li, S., & Hu, Y. (2025) · PLoS ONE · doi:10.1371/journal.pone.0331401
“NFKBIA inhibits pro-inflammatory cytokine expression through competitive binding to the RHD domain of NF-κ B [53].”
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Lymphome orbitopalpébral ou des annexes oculaires
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Analogue information processing in NF-κB gene regulatory system
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KLEBSIELLA PNEUMONIAE – CAUSATIVE AGENT OF ENTEROCOLITIS.
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“They also increase the levels of lipid peroxidation in the colon [23, 24].”
BackgroundHDX-MS analysis of catalytic activation of IKK2 in the IκB Kinase complex
Suryajaya, W., Biswas, T., Shahabi, S., Mealka, M., Huxford, T., & Ghosh, G. (2024) · Biochemistry · doi:10.1021/acs.biochem.4c00202
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“An excess of ROS induces the phosphorylation and proteasome-mediated degradation of I j B-a ; this process allows NF-j B to be released and translocate to the nucleus, thus activates the NF-j B signaling pathway ( 41 ).”
BackgroundKim, M. J., Park, S.-E., Lee, G.-S., Kim, J. H., Kwon, S.-D., & Hwang, H. (2023) · Journal of Applied Biological Chemistry · doi:10.3839/jabc.2023.029
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Nf-Kappa B Sinyal Yolu ve Kanserde Potansiyel Terapotik Yaklaşımlar
Bilici, E., & Uğuz, C. (2022) · Celal Bayar Üniversitesi Sağlık Bilimleri Enstitüsü Dergisi · doi:10.34087/cbusbed.1059531
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“[10,11] NF‑κB can be rapidly and transiently activated by a large variety of stimuli, such as DNA damage, cytokines, microbial components and mitogens [9] ,andin‑duces a variety of genes involved in cell proliferation and survival, including Cyclin D1 (CD1).”
Zhuang, P.-W., Sha, P., Shi, Z., & Luo, L. (2021) · doi:10.21203/rs.3.rs-174221/v1
Discovery of an IKK2 Site that Allosterically Controls Its ActivationPreprint
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“1 μg IkBα (1-54) and indicated concentration of inhibitors.”
BackgroundTumor-Associated Macrophages and Cancer Development
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“…B (NF-κB), a transcription factor that plays an important role in the transcription of genes, as it induces transcription of its target genes such as COX2, iNOS, TNF-α, IL-1β, and IL-6, chemokines and adhesion molecules (Karin & Ben-Neriah, 2000) that cause acute inflammation (Nguyen et al., 2020).”
BackgroundRecent Advances and Molecular Pathway in Salivary Adenoid Cystic Carcinoma (Review)
Xu, L., Li, L.-Z., Zhao, S.-L., & Liu, S.-F. (2020) · doi:10.2174/1574362414666190204124731
Zhuang, P.-W., Sha, P., Shi, Z., & Luo, L. (2020) · doi:10.21203/rs.3.rs-38815/v1
“LPS activates a complex of IκB kinases (IKK) and results in the phosphorylation of IκB protein, which is rapidly ubiquitinated and degraded (21).”
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Modeling the post-translational modifications and its effects in the NF-κB pathwayPreprint
Mobeen, A., & Ramachandran, S. (2020) · bioRxiv · doi:10.1101/2020.02.13.947010
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NF-Kappa B expression in pancreatic ductal carcinoma
Tunçel, D., & Bayol, N. (2019) · Cukurova Medical Journal · doi:10.17826/cumj.481396
NRF2/NF-ΚB CROSS TALK: A PUTATIVE TARGET FOR DEVELOPING NOVEL ANTI-INFLAMMATORY AGENTS
Gambhir, L. (2017) · doi:10.20959/wjpr20179-9200
“[13,14] NF-κB can be activated by an array of stimuli like oxidative stress, IR, microbial”
Background
Metadata
- Authors
- Karin, M., & Ben-Neriah, Y.
- Affiliations
- Hebrew University of Jerusalem (IL)
- Department of Pharmacology, Laboratory of Gene Regulation and Signal Transduction University of California, San Diego, La Jolla, California, 92093-0636;
- ORCID
- Karin, Michael
- Venue
- Annual Review of Immunology
- Publisher
- Annual Reviews
- Published
- 2000-04
- Volume
- 18
- Issue
- 1
- Pages
- 621-663
- ISSN
- 0732-0582 (ISSN-L)
- 1545-3278
- OpenAlex
- W2147921405
- Cited by
- 4,766
- References
- 243
- Citations by year
- 2026: 78 · 2025: 109 · 2024: 86 · 2023: 101 · 2022: 114 · 2021: 112 · 2020: 129 · 2019: 114 · 2018: 129 · 2017: 153 · 2016: 156 · 2015: 135 · 2014: 186 · 2013: 201 · 2012: 194
- FWCI
- 22.12
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Annual Review of Immunology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Cancer Institute (R01 CA76188, R01CA076188)
- National Institute of Allergy and Infectious Diseases (R01AI043477, R01 AI43477)
- National Institute of Environmental Health Sciences (R37ES004151, R37 ES04151)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › NF-κB Signaling Pathways
- Life Sciences › Immunology and Microbiology › Immunology › Immune Response and Inflammation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Signaling Pathways in Disease
- Keywords
- NF-κB, IκB phosphorylation, ubiquitination, IκB kinase, IKKα, IKKβ, E3 ubiquitin ligase, proteolysis, NF-κB nuclear translocation, TNF signaling, IL-1 signaling, Rel family transcription factors, inflammation, transcriptional regulation
- MeSH terms
- NF-KappaB Inhibitor alpha, Amino Acid Sequence, Animals, DNA-Binding Proteins, Humans, Molecular Sequence Data, Phosphorylation, Transcription Factors, Ubiquitins, Signal Transduction, Down-Regulation, NF-kappa B, Protein Serine-Threonine Kinases, I-kappa B Proteins, I-kappa B Kinase, NF-kappa B p50 Subunit
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