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Phosphorylation Meets Ubiquitination: The Control of NF-κB Activity
Abstract
NF-kappaB (nuclear factor-kappaB) is a collective name for inducible dimeric transcription factors composed of members of the Rel family of DNA-binding proteins that recognize a common sequence motif. NF-kappaB is found in essentially all cell types and is involved in activation of an exceptionally large number of genes in response to infections, inflammation, and other stressful situations requiring rapid reprogramming of gene expression. NF-kappaB is normally sequestered in the cytoplasm of nonstimulated cells and consequently must be translocated into the nucleus to function. The subcellular location of NF-kappaB is controlled by a family of inhibitory proteins, IkappaBs, which bind NF-kappaB and mask its nuclear localization signal, thereby preventing nuclear uptake. Exposure of cells to a variety of extracellular stimuli leads to the rapid phosphorylation, ubiquitination, and ultimately proteolytic degradation of IkappaB, which frees NF-kappaB to translocate to the nucleus where it regulates gene transcription. NF-kappaB activation represents a paradigm for controlling the function of a regulatory protein via ubiquitination-dependent proteolysis, as an integral part of a phosphorylationbased signaling cascade. Recently, considerable progress has been made in understanding the details of the signaling pathways that regulate NF-kappaB activity, particularly those responding to the proinflammatory cytokines tumor necrosis factor-alpha and interleukin-1. The multisubunit Ika…
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“Because of its ability to regulate the expression of inflammatory proteins, NFκB is believed to play a major role in the inflammatory process.”
From Thymosin beta 4 suppression of corneal NFκB: A potential anti-inflammatory pathway (2007) · cites this paper as Karin and Ben-Neriah, 2000
In the citing paper
“NFκB-induced gene expression requires that NFκB not only becomes activated, but it must also be phosphorylated and must physically translocate from cytoplasm to the nucleus (Karin and Ben-Neriah, 2000).”
From Thymosin beta 4 suppression of corneal NFκB: A potential anti-inflammatory pathway (2007) · cites this paper as Karin and Ben-Neriah, 2000
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Melatonin and retinal cell damage: molecular and biological functions
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“…the alternative pathway comprises the activation of NF-κB by a variety of molecules including lympho-toxin β (TNFSF3), CD40 ligand, B cell activating factor, and receptor activator of NF-κB ligand (RANKL) (Karin and Ben-Neriah 2000; Senftleben et al. 2001; Bonizzi et al. 2004; Novack et al. 2003).”
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Insights into the mechanism of transcription factors in Pb2+-induced apoptosis
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Molecular characterization and functional analysis of a mollusk Rel homologous gene.
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Animal venoms: a novel source of anti-Toxoplasma gondii drug candidates
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Fentanyl inhibits cell invasion and migration by modulating NF-κB activation in glioma.
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“Phosphorylation of IκB activates nuclear factor (NF)-κB, which is regarded as a proinflammatory signal pathway (Karin and Ben-Neriah 2000; Lawrence 2009).”
BackgroundAbdullah, M. A. F., McWhirter, S. M., & Suo, Z. (2023) · Cells · doi:10.3390/cells12030406 · Cited by 5
“IKKβ is primarily responsible for the phosphorylation of specific residues of prototypical IκB proteins (IκBα, IκBβ, and IκBε) bound to NF-κB as well as an atypical IκB protein, p105, which is the precursor of the NF-κB subunit p50 [36].”
BackgroundRajagopal, S., Poddar, R., & Paul, S. (2021) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2021.100944 · Cited by 5
“To clarify the role of NF-κB in glutamate-NMDAR–induced activation of the COX2/PGE2 signaling pathway in STEP KO mice neurons, we next evaluated the effect of glutamate on inhibitor of nuclear factorκB (IκB) degradation, a seminal step in NF-κB activation (34, 35).”
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“Nuclear factor-κB (NF-κB) is a transcription factor found in essentially all cell types and regulates the transcription of numerous genes involved in infection, inflammation, immunity, and cancer (Karin and Ben-Neriah, 2000).”
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“Phosphorylated IkB proteins are subjected to polyubiquitination and subsequent degradation or fragmentation in proteasomes [11].”
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“The free NF-κB complex is transported to the nucleus, which activates the expression of proinflammatory and destructive mediators (e.g., cyclooxygenase 2 [COX2] and prostaglandin E2 [PGE2], inducible nitric oxide synthase [iNOS] and catabolic enzymes [ADAMTS5 and MMP13]) [48–50].”
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“41,42 For example, when DNA damage occurs, the N-terminal region of p53 is phosphorylated, which reduces the binding between p53 and murine double minute 2, decreasing the ubiquitination of p53.”
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“In several signaling pathways, ubiquitination controls the location and activity of crucial protein kinases and the amounts of protein substrate (68).”
Contagious ecthyma in small ruminants: from etiology to vaccine challenges - a review
Reichen, C., Beirão, B. C. B., & Monteiro, A. L. G. (2025) · Veterinary Research Communications · doi:10.1007/s11259-025-10677-0 · Cited by 8
“This degradation allows NF-κB subunits to translocate to the nucleus, where they modulate the expression of target genes (Karin and Ben-Neriah 2000).”
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GILT stabilizes cofilin to promote the metastasis of prostate cancer
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“For instance, mammal nuclear factor-kappaB activation represents a paradigm for controlling the function of a transcription factor via proteolysis; NF-kappaB precursors are processed into mature active forms of smaller proteins by the UPS [62].”
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“Consequently, IKK α + β governs the expression of a multitude of inflammation-related genes within cells and modulates inflammatory responses by regulating the NF-κ B signaling pathway [65].”
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BackgroundTmem178 negatively regulates IL-1β production through inhibition of the NLRP3 inflammasome
Khanna, K., Yan, H., Mehra, M., Rohatgi, N., Mbalaviele, G., & Faccio, R. (2023) · bioRxiv · doi:10.1101/2023.03.07.531385 · Cited by 4
“Similar to osteoclasts (15), we did not detect differences in the phosphorylation and degradation of IκB-α, a readout for NF-κB activation (20), between WT and Tmem178-/- bone marrow derived macrophages (BMDMs) stimulated with LPS (Supplemental Fig.”
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Integrative Proteomic Analysis of Posttranslational Modification in The Inflammatory Response
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“Once cells are activated by inflammatory stimuli such as TNF-a and LPS, IjB-a is degraded and phosphorylated following in freeing active form p65/p50 (Lappas et al. 2002; Karin and Ben-Neriah 2000).”
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Wu, Y., Su, Y., Pan, F., Jin, F., Huang, H., Deng, A., Lu, Y., Lu, Y., Li, T., Du, J., et al. (2026) · Redox Biology · doi:10.1016/j.redox.2026.104209 · Cited by 4
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The Role of NF-κB in Peritoneal Fibrosis and Adhesion in Humans and Animals: A Systematic Review
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Natural products as therapeutic interventions for inflammation-mediated cancer
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Deciphering the Role of Macrophages in RSV Infection and Disease
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Activation of NF‐κB Signaling by Optogenetic Clustering of IKKα and β
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“…pathway, leading to the degradation of I κ B, the release of NF-κ B and its translocation into the nucleus, which in turn initiates the transcription of inflammation-related genes, resulting in a significant increase in the expression of pro-inflammatory cytokines such as TNF-α and IL-6 [37,39].”
InfluentialProteasome Inhibitors: Potential in Rheumatoid Arthritis Therapy?
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KDF1 promotes ameloblast differentiation by inhibiting the IKK/IκB/NF‐κB axis
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Metadata
- Authors
- Karin, M., & Ben-Neriah, Y.
- Affiliations
- Hebrew University of Jerusalem (IL)
- Department of Pharmacology, Laboratory of Gene Regulation and Signal Transduction University of California, San Diego, La Jolla, California, 92093-0636;
- ORCID
- Karin, Michael
- Venue
- Annual Review of Immunology
- Publisher
- Annual Reviews
- Published
- 2000-04
- Volume
- 18
- Issue
- 1
- Pages
- 621-663
- ISSN
- 0732-0582 (ISSN-L)
- 1545-3278
- OpenAlex
- W2147921405
- Cited by
- 4,766
- References
- 243
- Citations by year
- 2026: 78 · 2025: 109 · 2024: 86 · 2023: 101 · 2022: 114 · 2021: 112 · 2020: 129 · 2019: 114 · 2018: 129 · 2017: 153 · 2016: 156 · 2015: 135 · 2014: 186 · 2013: 201 · 2012: 194
- FWCI
- 22.12
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Annual Review of Immunology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Cancer Institute (R01 CA76188, R01CA076188)
- National Institute of Allergy and Infectious Diseases (R01AI043477, R01 AI43477)
- National Institute of Environmental Health Sciences (R37ES004151, R37 ES04151)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › NF-κB Signaling Pathways
- Life Sciences › Immunology and Microbiology › Immunology › Immune Response and Inflammation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Signaling Pathways in Disease
- Keywords
- NF-κB, IκB phosphorylation, ubiquitination, IκB kinase, IKKα, IKKβ, E3 ubiquitin ligase, proteolysis, NF-κB nuclear translocation, TNF signaling, IL-1 signaling, Rel family transcription factors, inflammation, transcriptional regulation
- MeSH terms
- NF-KappaB Inhibitor alpha, Amino Acid Sequence, Animals, DNA-Binding Proteins, Humans, Molecular Sequence Data, Phosphorylation, Transcription Factors, Ubiquitins, Signal Transduction, Down-Regulation, NF-kappa B, Protein Serine-Threonine Kinases, I-kappa B Proteins, I-kappa B Kinase, NF-kappa B p50 Subunit
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