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Common DNA Markers Can Account for More Than Half of the Genetic Influence on Cognitive Abilities
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For nearly a century, twin and adoption studies have yielded substantial estimates of heritability for cognitive abilities, although it has proved difficult for genomewide-association studies to identify the genetic variants that account for this heritability (i.e., the missing-heritability problem). However, a new approach, genomewide complex-trait analysis (GCTA), forgoes the identification of individual variants to estimate the total heritability captured by common DNA markers on genotyping arrays. In the same sample of 3,154 pairs of 12-year-old twins, we directly compared twin-study heritability estimates for cognitive abilities (language, verbal, nonverbal, and general) with GCTA estimates captured by 1.7 million DNA markers. We found that DNA markers tagged by the array accounted for .66 of the estimated heritability, reaffirming that cognitive abilities are heritable. Larger sample sizes alone will be sufficient to identify many of the genetic variants that influence cognitive abilities.
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“findings generally supported by heritability estimates from genome-wide data on unrelated individuals (Davies et al., 2011; Plomin et al., 2013).”
From Large Cross-National Differences in Gene × Socioeconomic Status Interaction on Intelligence (2016) · cites this paper as Plomin et al., 2013
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GCTA: a tool for genome-wide complex trait analysis
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Common SNPs explain a large proportion of the heritability for human height
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“GCTA has been used to estimate heritability as captured by genotyping arrays for height (Yang et al., 2010), weight (Yang, Manolio, et al., 2011), psychiatric and other medical disorders (Lee et al., 2012; Lee et al., 2011; Lubke et al., 2012), and personality (Vinkhuyzen, Pedersen, et al., 2012).”
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Genome-wide association studies for complex traits: consensus, uncertainty and challenges
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“GWA studies assess associations between a trait and hundreds of thousands of DNA markers (typically singlenucleotide polymorphisms, SNPs) distributed throughout the 3 billion nucleotide bases of the genome genotyped simultaneously using a DNA array the size of a postage stamp (McCarthy et al., 2008).”
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Hundreds of variants clustered in genomic loci and biological pathways affect human height
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“This would mean that, with sample sizes in the hundreds of thousands, as in research on height (Lango Allen et al., 2010) and weight (Speliotes et al., 2010), many replicable associations between DNA and cognitive abilities could be found.”
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“However, there is a great gap between genes identified so far in GWA studies and heritability estimates— the missing-heritability problem (Maher, 2008).”
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Gibson, G. (2012) · Nature Reviews Genetics · doi:10.1038/nrg3118 · Cited by 1,278 · cited 2×
“Accounting for the rest of the missing heritability is likely to require other DNA variants not well tagged by the common SNPs on current DNA arrays (Gibson, 2012).”
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“One of many possible reasons for the missing-heritability problem is that the common SNPs (i.e., SNPs for which the frequency of the less frequent allele is greater than .01) incorporated in commercially available DNA arrays miss the contribution of rare DNA variants (Cirulli & Goldstein, 2010).”
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“GCTA has been used to estimate heritability as captured by genotyping arrays for height (Yang et al., 2010), weight (Yang, Manolio, et al., 2011), psychiatric and other medical disorders (Lee et al., 2012; Lee et al., 2011; Lubke et al., 2012), and personality (Vinkhuyzen, Pedersen, et al., 2012).”
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“Using this approach, Benyamin, Pourcain, Davis, Davies, and Visscher (2013) found that the similarity between SNPs could explain between 22% and 46% of phenotypic variation in childhood intelligence in three large cohorts totaling 18,000 individuals aged between 6 and 18 (see also Plomin, Haworth, Meaburn, Price, & Da…”
BackgroundMethodInfluentialShame and Guilt-Proneness in Adolescents: Gene-Environment Interactions
Szentágotai-Tătar, A., Chiş, A., Vulturar, R., Dobrean, A., Nechita, D., & Miu, A. C. (2015) · PLoS ONE · doi:10.1371/journal.pone.0134716 · Cited by 18
Harlaar, N., Trzaskowski, M., Dale, P. S., & Plomin, R. J. (2014) · Child Development · doi:10.1111/cdev.12207 · Cited by 19
Self-citationPower, R., Nagoshi, C., Defries, J., & Plomin, R. (2013) · European Journal of Human Genetics · doi:10.1038/ejhg.2013.155 · Cited by 18
Self-citationModelling human hard palate shape with Bézier curves
Janssen, R., Moisik, S. R., & Dediu, D. (2018) · PLoS ONE · doi:10.1371/journal.pone.0191557 · Cited by 15
Maksimov, M., Vaht, M., Murd, C., Harro, J., & Bachmann, T. (2015) · Neuropsychologia · doi:10.1016/j.neuropsychologia.2015.03.022 · Cited by 17
“Differences in brain function also include varieties of pathology, which in turn can be nonrandomly distributed between different genotypes (Bouchard and Loehlin, 2001; Plomin et al., 2013).”
BackgroundDNA Dreams': Teacher Perspectives on the Role and Relevance of Genetics for Education
Martschenko, D. O. (2019) · Research in Education · doi:10.1177/0034523719869956 · Cited by 23
“Researchers say that this phenomenon is due to the polygenic nature of the behaviour (Plomin et al., 2013); in other words, intelligence is influenced by many genes, each with a small effect size.”
BackgroundPsychometric Studies of Scientific Talent and Eminence
Feist, G. J. (2014) · doi:10.1002/9781118367377.ch4 · Cited by 14
A statistical genetic investigation of psychiatric resilience
Cusack, S. E., Alıev, F., Bustamante, D., Spit for Science Working Group, Dick, D. M., & Amstadter, A. B. (2023) · European Journal of Psychotraumatology · doi:10.1080/20008066.2023.2178762 · Cited by 12
Nivison, M. D., Fearon, P., Jenkins, J. M., & Madigan, S. (2026) · Journal of Child Psychology and Psychiatry and Allied Disciplines · doi:10.1111/jcpp.70087 · Cited by 12
“Although language and cognitive ability are highly heritable (Plomin et al., 2013; Plomin & Spinath, 2002), Roisman and Fraley (2012) found that in behavior-genetic models, the phenotypic correlation between sensitivity and academic skills was largely attributable to environmental (shared and…”
Realo, A., van der Most, P. J., Allïk, J., Esko, T., Jeronimus, B. F., Kööts‐Ausmees, L., Mõttus, R., Tropf, F. C., Snieder, H., & Ormel, J. (2016) · Journal of Personality · doi:10.1111/jopy.12297 · Cited by 16
Johnson, W., & Bouchard, T. J. (2014) · Wiley eBooks · doi:10.1002/9781118367377.ch14 · Cited by 10
“While molecular methods confirm that cognitive abilities are strongly under the influence of genes (Plomin et al., 2013), despite considerable effort, often in the form of very large genome-wide association consortium studies, we currently know of no genetic variants reliably associated with…”
BackgroundCognitive Traits as Sexually Selected Fitness Indicators
Klasios, J. (2013) · Review of General Psychology · doi:10.1037/a0034391 · Cited by 9
“…de Geus, & Deary, 2009; Segal & Johnson, 2009)—with molecular-genetic studies also confirming its heritable basis (e.g., Davies et al., 2011; Plomin et al., 2013)—it would certainly accord with Miller’s overall thesis insofar as it, too, is a latent variable that correlates with the…”
BackgroundGenome-Wide Estimates of Heritability for Social Demographic Outcomes
Domingue, B. W., Wedow, R., Conley, D., McQueen, M. B., Hoffmann, T. J., & Boardman, J. D. (2016) · Biodemography and Social Biology · doi:10.1080/19485565.2015.1068106 · Cited by 10
Franić, S., Dolan, C. V., Broxholme, J., Hu, H., Żemojtel, T., Davies, G. E., Nelson, K. A., Ehli, E. A., Pool, R., Hottenga, J., et al. (2014) · Intelligence · doi:10.1016/j.intell.2014.12.001 · Cited by 8
Alexander, D. R. (2020) · Cambridge University Press eBooks · doi:10.1017/9781108566520.005
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A Common Polymorphism in SCN2A Predicts General Cognitive Ability through Effects on PFC Physiology
Scult, M. A., Trampush, J. W., Zheng, F., Drabant, E. M., Lencz, T., Malhotra, A. K., Dickinson, D., Weinberger, D. R., & Hariri, A. R. (2015) · Journal of Cognitive Neuroscience · doi:10.1162/jocn_a_00826 · Cited by 7
Correction: First Genome-Wide Association Study on Anxiety-Related Behaviours in Childhood
Trzaskowski, M., Eley, T., Davis, O., Doherty, S. J., Hanscombe, K. B., Meaburn, E., Haworth, C., Price, T. S., & Plomin, R. (2013) · PLoS ONE · doi:10.1371/annotation/d320e3eb-ab8f-43ce-b341-3da36cd7ff99 · Cited by 7
Self-citationGenetics of Brain Aging – Twin Aging
Reynolds, C. A., & Phillips, D. (2014) · Elsevier eBooks · doi:10.1016/b978-0-12-801238-3.04608-0 · Cited by 7
Paternity analysis reveals sexual selection on cognitive performance in mosquitofish
Vinogradov, I., Fox, R. J., Fichtel, C., Kappeler, P., & Jennions, M. (2025) · Nature Ecology & Evolution · doi:10.1038/s41559-025-02645-3 · Cited by 6
“We assigned boldness to each male as the mean time to emerge from the start zone in trials 1–8 in the inhibitory control assay.”
Fine mapping genetic associations between the HLA region and extremely high intelligence
Zabaneh, D., Krapohl, E. M. L., Simpson, M. A., Miller, M. B., Iacono, W. G., McGue, M. K., Putallaz, M., Lubinski, D., Plomin, R. J., & Breen, G. D. (2017) · Scientific Reports · doi:10.1038/srep41182 · Cited by 6
Self-citationParents’ Wisdom and Adolescents’ Cognitive, Social, and Emotional Developmental Qualities
Mazloom, M. Z., Ardelt, M., Asadi, S., & Dehghani, F. (2023) · Journal of Family Issues · doi:10.1177/0192513x231155650 · Cited by 5
“Other factors than parental wisdom, such as heritability (Allegrini et al., 2019; Plomin, Fulker, Corley, & DeFries, 1997; Plomin et al., 2013), parental socioeconomic status (Cave et al., 2022; Demetriou et al., 2020; Madhushanthi et al., 2020; O ’ Connell & Marks, 2021; Rindermann & Ceci, 2018;…”
BackgroundSilva, P. R., Marinho, V., Magalhães, F., Farias, T., Gupta, D., Barbosa, A. L. R., Velasques, B., Ribeiro, P., Cagy, M., Bastos, V., et al. (2022) · Consciousness and Cognition · doi:10.1016/j.concog.2022.103317 · Cited by 5
Talent as an unintentional agent
Papageorgiou, K. (2015) · Bioethica · doi:10.12681/bioeth.19651 · Cited by 4
The Neurobiological Strands of Developmental Dyslexia: What We Know and What We Don’t Know
Sand, L. A., & Bolger, D. J. (2019) · Springer eBooks · doi:10.1007/978-3-030-26550-2_10 · Cited by 7
Lin, Y., Procopio, F., Keser, E., Kawakami, K., Rimfeld, K., Malanchini, M., & Plomin, R. J. (2025) · Intelligence & Cognitive Abilities · doi:10.65550/001c.140654 · Cited by 3
Self-citationCognition and Its Shaping Effect on Sexual Conflict: Integrating Biology and Psychology
Álvarez, B., & Koene, J. M. (2022) · Frontiers in Integrative Neuroscience · doi:10.3389/fnint.2022.826304 · Cited by 2
Atypical Cognitive Development
Pennington, B. F. (2015) · Wiley eBooks · doi:10.1002/9781118963418.childpsy223 · Cited by 2
Blurred Lines: A Study of Engagement in Online Learning
Chametzky, B. (2015) · Journal of Education Society and Behavioural Science · doi:10.9734/bjesbs/2015/16876 · Cited by 3
Carvalho, C., & Ravindran, N. (2025) · Journal of Research on Adolescence · doi:10.1111/jora.70125 · Cited by 3
“Although cognitive abilities are highly heritable in general across the lifespan (Plomin et al., 2013), they are also subject to environmental influences (Nisbett et al., 2012).”
Dong, L., Giangrande, E. J., Womack, S. R., Yoo, K., Beam, C. R., Jacobson, K. C., & Turkheimer, E. N. (2023) · Behavior Genetics · doi:10.1007/s10519-023-10145-y · Cited by 3
The Trilogy of GxE : Conceptualization, Operationalization, and Application
Grigorenko, E. L., Bick, J. R., Campbell, D. J., Lewine, G., Abrams, J., Nguyen, V. T., & Chang, J. T. (2016) · Wiley eBooks · doi:10.1002/9781119125556.devpsy208 · Cited by 2
“…and all subsequent ones (until recently, when the data-analytic approach changed and genomewide complex-trait analysis, GCTA, was introduced, e.g., Plomin et al., 2013), reportedly accounted for only a small proportion of the previously published heritability estimates of diseases/disorders and…”
BackgroundBiosocial theories: Behavioral genetics and sociobiology
Newman, B. M., & Newman, P. R. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-815450-2.00003-6 · Cited by 1
Kaplan, J. M. (2014) · Biology & Philosophy · doi:10.1007/s10539-014-9428-0 · Cited by 25
The genetics of specific cognitive abilities
Procopio, F., Zhou, Q., Wang, Z.-Y., Gidziela, A., Rimfeld, K., Malanchini, M., & Plomin, R. (2022) · bioRxiv · doi:10.1101/2022.02.05.479237 · Cited by 1
Self-citationGenetic Information and How It Flows
Alexander, D. R. (2020) · Cambridge University Press eBooks · doi:10.1017/9781108566520.003 · Cited by 1
Metadata
- Authors
- Plomin, R., Haworth, C. M. A., Meaburn, E. L., Price, T. S., Wellcome Trust Case Control Consortium 2, & Davis, O. S. P.
- Affiliations
- King's College London (GB)
- University of London (GB)
- Pennsylvania State University (US)
- University of Bristol (GB)
- Corresponding author
- Plomin, Robert
- Venue
- Psychological Science
- Publisher
- SAGE Publications
- Published
- 2013-03-15
- Volume
- 24
- Issue
- 4
- Pages
- 562-568
- ISSN
- 0956-7976 (ISSN-L)
- 1467-9280
- PMC
- PMC3652710
- OpenAlex
- W2098272018
- Cited by
- 138
- References
- 39
- Citations by year
- 2026: 2 · 2025: 6 · 2024: 1 · 2023: 3 · 2022: 5 · 2021: 1 · 2020: 20 · 2019: 6 · 2018: 8 · 2017: 5 · 2016: 15 · 2015: 19 · 2014: 27 · 2013: 19
- FWCI
- 17.69
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- Psychological Science (publishedVersion, cc-by-nc)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- BIROn (Birkbeck, University of London) (acceptedVersion)
- Warwick Research Archive Portal (University of Warwick) (acceptedVersion)
- UCL Discovery (University College London) (submittedVersion)
- Research Portal (King's College London) (submittedVersion, other-oa)
- Bristol Research (University of Bristol) (submittedVersion)
- Explore Bristol Research (submittedVersion)
- Funders
- Wellcome Trust (085475/Z/08/Z, WT088984, 085475/B/08/Z)
- Eunice Kennedy Shriver National Institute of Child Health and Human Development (HD044454, R01HD046167, HD046167, R01HD044454)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
- Social Sciences › Psychology › Experimental and Cognitive Psychology › Cognitive Abilities and Testing
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Mapping and Diversity in Plants and Animals
- Keywords
- cognitive ability, heritability, missing heritability, twin studies, language skills, verbal ability, nonverbal ability, genetic variants, genotyping arrays
- MeSH terms
- Child, Cognition, Genetic Markers, Genotype, Humans, Intelligence, Phenotype, Twins, Dizygotic, Twins, Monozygotic, Polymorphism, Single Nucleotide, Genome-Wide Association Study
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