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Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly
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The mammalian diet type phenotype has three main categories: herbivore, omnivore, and carnivore.
“the mammalian diet type phenotype has three main categories (herbivore, omnivore, and carnivore) that cannot be meaningfully ordered.”
From RERconverge Expansion: Using Relative Evolutionary Rates to Study Complex Categorical Trait Evolution (2024) · cites this paper as Kim et al. 2016
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BLAST+: architecture and applications
Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K., & Madden, T. L. (2009) · BMC Bioinformatics · doi:10.1186/1471-2105-10-421 · Cited by 22,074
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Siepel, A., Bejerano, G., Pedersen, J. S., Hinrichs, A. S., Hou, M., Rosenbloom, K., Clawson, H., Spieth, J., Hillier, L. W., Richards, S., et al. (2005) · Genome Research · doi:10.1101/gr.3715005 · Cited by 3,971 · cited 1×
“etic variation patterns is critical for understanding the dynamics of genomic change and relevant adaptation of each and a group of species [51, 52].”
BackgroundStatus and Ecological Effects of the World’s Largest Carnivores
Ripple, W. J., Estes, J. A., Beschta, R. L., Wilmers, C. C., Ritchie, E. G., Hebblewhite, M., Berger, J., Elmhagen, B., Letnic, M., Nelson, M. P., et al. (2014) · Science · doi:10.1126/science.1241484 · Cited by 3,667
The sequence and de novo assembly of the giant panda genome
Li, R., Fan, W., Tian, G., Zhu, H., He, L., Cai, J., Huang, Q., Cai, Q., Li, B., Bai, Y., et al. (2010) · Nature · doi:10.1038/nature08696 · Cited by 1,180
Sunquist, M., & Sunquist, F. (2002) · doi:10.7208/chicago/9780226518237.001.0001 · Cited by 1,179
Bastide, N. M., Pierre, F. H. F., & Corpet, D. E. (2011) · Cancer Prevention Research · doi:10.1158/1940-6207.capr-10-0113 · Cited by 397 · cited 1×
“We interpret this result as a dietary adaptation for high meat consumption that is associated with an increased risk of cancer in humans [46], and that the heme-related reactive oxygen species (ROS) in meat cause DNA damage and disrupt normal cell proliferation [47, 48].”
BackgroundGenome-wide scans for footprints of natural selection
Oleksyk, T. K., Smith, M. W., & O'Brien, S. J. (2010) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2009.0219 · Cited by 340
Self-citationMontague, M. J., Li, G., Gandolfi, B., Khan, R., Aken, B. L., Searle, S. M. J., Minx, P., Hillier, L. W., Koboldt, D. C., Davis, B. W., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1410083111 · Cited by 340
Self-citationThe tiger genome and comparative analysis with lion and snow leopard genomes
Cho, Y. S., Hu, L., Hou, H., Lee, H., Xu, J., Kwon, S., Oh, S., Kim, H.-M., Jho, S., Kim, S., et al. (2013) · Nature Communications · doi:10.1038/ncomms3433 · Cited by 312
Self-citationGenomic legacy of the African cheetah, Acinonyx jubatus
Dobrynin, P., Liu, S., Tamazian, G., Xiong, Z., Yurchenko, A. A., Krasheninnikova, K., Kliver, S., Schmidt-Küntzel, A., Koepfli, K.-P., Johnson, W., et al. (2015) · Genome Biology · doi:10.1186/s13059-015-0837-4 · Cited by 204
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Metadata
- Authors
- Kim, S., Cho, Y. S., Kim, H.-M., Chung, O., Kim, H., Jho, S., Seomun, H., Kim, J., Bang, W. Y., Kim, C., An, J., Bae, C. H., Bhak, Y., Jeon, S., Yoon, H., Kim, Y., Jun, J., Lee, H., Cho, S., Uphyrkina, O., Kostyria, A., Goodrich, J., Miquelle, D., Roelke, M., Lewis, J., Yurchenko, A., Bankevich, A., Cho, J., Lee, S., Edwards, J. S., Weber, J. A., Cook, J., Kim, S., Lee, H., Manica, A., Lee, I., O’Brien, S. J., Bhak, J., & Yeo, J.-H.
- Venue
- Genome Biology
- Published
- 2016-11-02
- Volume
- 17
- Issue
- 1
- ISSN
- 1474-760X
- PMC
- PMC5090899
- Cited by
- 137
- References
- 11
- Language
- en
- Funders
- National Institute of Biological Resources (NIBR201503101, NIBR201603104)
- Ulsan National Institute of Science and Technology (1.150014.01)
- Russian Ministry of Science Mega-grant (no.11.G34.31.0068)
- Saint Petersburg State University (No 15.61.95112015)
- Ministry of Science, ICT and Future Planning (S0177-16-1046)
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