Acute Sleep Loss Induces Tissue-Specific Epigenetic and Transcriptional Alterations to Circadian Clock Genes in Men
Abstract
Context: Shift workers are at increased risk of metabolic morbidities. Clock genes are known to regulate metabolic processes in peripheral tissues, eg, glucose oxidation. Objective: This study aimed to investigate how clock genes are affected at the epigenetic and transcriptional level in peripheral human tissues following acute total sleep deprivation (TSD), mimicking shift work with extended wakefulness. Intervention: In a randomized, two-period, two-condition, crossover clinical study, 15 healthy men underwent two experimental sessions: x sleep (2230–0700 h) and overnight wakefulness. On the subsequent morning, serum cortisol was measured, followed by skeletal muscle and subcutaneous adipose tissue biopsies for DNA methylation and gene expression analyses of core clock genes (BMAL1, CLOCK, CRY1, PER1). Finally, baseline and 2-h post-oral glucose load plasma glucose concentrations were determined. Main Outcome Measures: In adipose tissue, acute sleep deprivation vs sleep increased methylation in the promoter of CRY1 (+4%; P = .026) and in two promoter-interacting enhancer regions of PER1 (+15%; P = .036; +9%; P = .026). In skeletal muscle, TSD vs sleep decreased gene expression of BMAL1 (−18%; P = .033) and CRY1 (−22%; P = .047). Concentrations of serum cortisol, which can reset peripheral tissue clocks, were decreased (2449 ± 932 vs 3178 ± 723 nmol/L; P = .039), whereas postprandial plasma glucose concentrations were elevated after TSD (7.77 ± 1.63 vs 6.59 ± 1.32 mmol/L; P = .011). Conclusions: Our findings demonstrate that a single night of wakefulness can alter the epigenetic and transcriptional profile of core circadian clock genes in key metabolic tissues. Tissue-specific clock alterations could explain why shift work may disrupt metabolic integrity as observed herein.
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One night of sleep deprivation leads to a reduction in glucose tolerance.
“One night of sleep deprivation (commonly experienced by 20% of the world's population who perform shift-work) leads to a reduction in glucose tolerance and concomitant alterations in the expression of skeletal muscle clock genes (i.e., Bmal1 and Cry1 gene expression [7]) and the content of clock proteins (i.e., BMAL1) [8]”
From Exercise mitigates sleep-loss-induced changes in glucose tolerance, mitochondrial function, sarcoplasmic protein synthesis, and diurnal rhythms (2021) · cites this paper as [7]
The detrimental effect of sleep loss on glucose metabolism may also be associated with misalignment of circadian rhythms.
“The detrimental effect of sleep loss on glucose metabolism may also be associated with the misalignment of circadian rhythms [7,8].”
From Exercise mitigates sleep-loss-induced changes in glucose tolerance, mitochondrial function, sarcoplasmic protein synthesis, and diurnal rhythms (2021) · cites this paper as [7]
One night of sleep deprivation leads to concomitant alterations in expression of skeletal muscle clock genes (Bmal1 and Cry1) and content of clock proteins (BMAL1).
“One night of sleep deprivation (commonly experienced by 20% of the world's population who perform shift-work) leads to a reduction in glucose tolerance and concomitant alterations in the expression of skeletal muscle clock genes (i.e., Bmal1 and Cry1 gene expression [7]) and the content of clock proteins (i.e., BMAL1) [8]”
From Exercise mitigates sleep-loss-induced changes in glucose tolerance, mitochondrial function, sarcoplasmic protein synthesis, and diurnal rhythms (2021) · cites this paper as [7]
Molecular markers of circadian rhythm are altered by a night of sleep deprivation.
“As many of the molecular processes that regulate mitochondrial content, function, and dynamics are regulated in a circadian manner [60,61] and considering that molecular markers of circadian rhythm are altered by a night of sleep deprivation [7,8], we also examined aspects of diurnal rhythmicity using the measures of peripheral skin temperature (obtained over 48 h, pre- and post-intervention) and”
From Exercise mitigates sleep-loss-induced changes in glucose tolerance, mitochondrial function, sarcoplasmic protein synthesis, and diurnal rhythms (2021) · cites this paper as [7]
Cedernaes et al. reported a decrease in Bmal1 mRNA expression in 15 participants following 24 h of sleep deprivation.
“This is in contrast to previous findings from Cedernaes et al. [7,8] who reported a decrease in Bmal1 mRNA expression in 15 participants following 24 h of sleep deprivation.”
From Exercise mitigates sleep-loss-induced changes in glucose tolerance, mitochondrial function, sarcoplasmic protein synthesis, and diurnal rhythms (2021) · cites this paper as [7]
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Cites
Integrative analysis of 111 reference human epigenomes
Roadmap Epigenomics Consortium, Kundaje, A., Meuleman, W., Ernst, J., Bilenky, M., Yen, A., Heravi-Moussavi, A., Kheradpour, P., Zhang, Z., Wang, J., et al. (2015) · Nature · doi:10.1038/nature14248 · Cited by 6,368 · see citing works
An atlas of active enhancers across human cell types and tissues
The FANTOM Consortium, Andersson, R., Gebhard, C., Miguel-Escalada, I., Hoof, I., Bornholdt, J., Boyd, M., Chen, Y., Zhao, X., Schmidl, C., et al. (2014) · Nature · doi:10.1038/nature12787 · Cited by 2,550 · see citing works
Chang, A.-M., Aeschbach, D., Duffy, J. F., & Czeisler, C. A. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1418490112 · Cited by 1,430 · cited 1× · see citing works
“Ambient light can influence circadian rhythms (37).”
Acute Exercise Remodels Promoter Methylation in Human Skeletal Muscle
Barrès, R., Yan, J., Egan, B., Treebak, J. T., Rasmussen, M., Fritz, T., Caidahl, K., Krook, A., O'Gorman, D. J., & Zierath, J. R. (2012) · Cell Metabolism · doi:10.1016/j.cmet.2012.01.001 · Cited by 965 · cited 4× · see citing works
“DNA methylation of gene promoters and promoter-interacting enhancers is one epigenetic mechanism involved in the control of gene expression (9) and is a malleable process following acute lifestyle interventions (10).”
BackgroundInfluentialSelf-citationEntrainment of the Human Circadian Clock to the Natural Light-Dark Cycle
Wright, K. P., McHill, A. W., Birks, B. R., Griffin, B. R., Rusterholz, T., & Chinoy, E. D. (2013) · Current Biology · doi:10.1016/j.cub.2013.06.039 · Cited by 783 · see citing works
Leproult, R., Holmbäck, U., & Van Cauter, E. (2014) · Diabetes · doi:10.2337/db13-1546 · Cited by 607 · see citing works
Muscle insulin sensitivity and glucose metabolism are controlled by the intrinsic muscle clock
Dyar, K. A., Ciciliot, S., Wright, L. E., Biensø, R. S., Tagliazucchi, G. M., Patel, V. R., Forcato, M., Paz, M. I. P., Gudiksen, A., Solagna, F., et al. (2014) · Molecular Metabolism · doi:10.1016/j.molmet.2013.10.005 · Cited by 454 · see citing works
Broussard, J. L., Ehrmann, D. A., Van Cauter, E., Tasali, E., & Brady, M. J. (2012) · Annals of Internal Medicine · doi:10.7326/0003-4819-157-8-201210160-00005 · Cited by 364 · cited 2× · see citing works
“Perspectives Since recurrent partial sleep deprivation decreases insulin sensitivity at the systemic and adipose tissue level in humans (28, 35), future studies to examine whether similar changes occur under conditions of recurrent partial sleep deprivation are of interest.”
BackgroundThe metabolic burden of sleep loss
Schmid, S. M., Hallschmid, M., & Schultes, B. (2015) · The Lancet Diabetes & Endocrinology · doi:10.1016/s2213-8587(14)70012-9 · Cited by 328 · see citing works
Shift work: coping with the biological clock.
Arendt, J. (2010) · Occupational Medicine · doi:10.1093/occmed/kqp162 · Cited by 308 · see citing works
Acute sleep deprivation reduces energy expenditure in healthy men
Benedict, C., Hallschmid, M., Lassen, A., Mahnke, C., Schultes, B., Schiöth, H. B., Born, J., & Lange, T. (2011) · The American Journal of Clinical Nutrition · doi:10.3945/ajcn.110.006460 · Cited by 243 · see citing works
Self-citationSubchronic sleep restriction causes tissue-specific insulin resistance
Rao, M. N., Neylan, T. C., Grunfeld, C., Mulligan, K., Schambelan, M., & Schwarz, J.-M. (2015) · The Journal of Clinical Endocrinology & Metabolism · doi:10.1210/jc.2014-3911 · Cited by 156 · see citing works
Cedernaes, J., Schiöth, H. B., & Benedict, C. (2015) · Diabetes · doi:10.2337/db14-1475 · Cited by 103 · cited 2× · see citing works
“Over time, these conditions may thus result in metabolic dysregulation and weight gain (6, 7).”
BackgroundSelf-citationEffects of sleep-deprivation on the activity of selected metabolic enzymes in skeletal-muscle
Vondra, K., Brodan, V., Bass, A., Kuhn, E., Teisinger, J., AndĚl, M., & Veselková, A. (1981) · European Journal of Applied Physiology and Occupational Physiology · doi:10.1007/bf00422481 · Cited by 53 · see citing works
Flagged first, then by citations
Research works printed but not linked: 27
- Bass J. Circadian topology of metabolism. Nature. 2012;491:348 - 356.
- Paschos GK, Ibrahim S, Song WL, et al. Obesity in mice with adi- pocyte-specific deletion of clock component Arntl. Nat Med. 2012; 18:1768 -1777.
- Marcheva B, Ramsey KM, Buhr ED, et al. Disruption of the clock components CLOCK and BMAL1 leads to hypoinsulinaemia and diabetes. Nature. 2010;466:627-631.
- Turek FW, Joshu C, Kohsaka A, et al. Obesity and metabolic syn- drome in circadian Clock mutant mice. Science. 2005;308:1043- 1045.
- Möller -Levet CS, Archer SN, Bucca G, et al. Effects of insufficient sleep on circadian rhythmicity and expression amplitude of the hu- man blood transcriptome. Proc Natl Acad Sci U S A. 2013;110: E1132-E1141.
- Teschendorff AE, Marabita F, Lechner M, et al. A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data. Bioinformatics. 2013;29:189 -196.
- Johnson WE, Li C, Rabinovic A. Adjusting batch effects in microar- ray expression data using empirical Bayes methods. Biostatistics. 2007;8:118 -127.
- Hillmer AM, Yao F, Inaki K, et al. Comprehensive long-span paired- end-tag mapping reveals characteristic patterns of structural varia- tions in epithelial cancer genomes. Genome Res. 2011;21:665-675.
- Benjamini Y, Drai D, Elmer G, Kafkafi N, Golani I. Controlling the false discovery rate in behavior genetics research. Behav Brain Res. 2001;125:279 -284.
- Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods. 2001;25:402-408.
- Du P, Zhang X, Huang CC, et al. Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinformatics. 2010;11:587.
- Milagro FI, Gómez-Abellán P, Campión J, Martínez JA, Ordovás JM, Garaulet M. CLOCK, PER2 and BMAL1 DNA methylation: Association with obesity and metabolic syndrome characteristics and monounsaturated fat intake. Chronobiol Int. 2012;29:1180 - 1194.
- Zhu Y, Stevens RG, Hoffman AE, et al. Epigenetic impact of long- term shiftwork: Pilot evidence from circadian genes and whole-ge- nome methylation analysis. Chronobiol Int. 2011;28:852-861.
- Lamia KA, Papp SJ, Yu RT, et al. Cryptochromes mediate rhythmic repression of the glucocorticoid receptor. Nature. 2011;480:552- 556.
- Ando H, Takamura T, Matsuzawa-Nagata N, et al. Clock gene expression in peripheral leucocytes of patients with type 2 diabetes. Diabetologia. 2009;52:329 -335.
- Backhaus J, Junghanns K, Hohagen F. Sleep disturbances are cor- related with decreased morning awakening salivary cortisol. Psy- choneuroendocrinology. 2004;29(9):1184 -91.
- Balsalobre A, Brown SA, Marcacci L, et al. Resetting of circadian time in peripheral tissues by glucocorticoid signaling. Science. 2000; 289:2344 -2347.
- Yamazaki S, Numano R, Abe M, et al. Resetting central and pe- ripheral circadian oscillators in transgenic rats. Science. 2000;288: 682-685.
- Bass J, Takahashi JS. Circadian integration of metabolism and en- ergetics. Science. 2010;330:1349 -1354.
- Eckel-Mahan K, Sassone-Corsi P. Metabolism and the circadian clock converge. Physiol Rev. 2013;93:107-135.
- McDearmon EL, Patel KN, Ko CH, et al. Dissecting the functions of the mammalian clock protein BMAL1 by tissue-specific rescue in mice. Science. 2006;314:1304 -1308.
- Liu C, Li S, Liu T, Borjigin J, Lin JD. Transcriptional coactivator PGC-1alpha integrates the mammalian clock and energy metabo- lism. Nature. 2007;447:477-481.
- Nagaya T, Yoshida H, Takahashi H, Kawai M. Markers of insulin resistance in day and shift workers aged 30 -59 years. Int Arch Oc- cup Environ Health. 2002;75:562-568.
- Buxton OM, Cain SW, O'Connor SP, et al. Adverse metabolic con- sequences in humans of prolonged sleep restriction combined with circadian disruption. Sci Transl Med. 2012;4:129ra143.
- Dopico XC, Evangelou M, Ferreira RC, et al. Widespread seasonal gene expression reveals annual differences in human immunity and physiology. Nat Commun. 2015;6:7000.
- Scheer FA, Buijs RM. Light affects morning salivary cortisol in hu- mans. J Clin Endocrinol Metab. 1999;84:3395-3398.
- Stokkan KA, Yamazaki S, Tei H, Sakaki Y, Menaker M. Entrain- ment of the circadian clock in the liver by feeding. Science. 2001; 291:490 -493.
Cited by
Sorted by citations
Mechanisms linking circadian clocks, sleep, and neurodegeneration
Musiek, E. S., & Holtzman, D. M. (2016) · Science · doi:10.1126/science.aah4968 · Cited by 878 · see citing works
Benedict, C., Vogel, H., Jonas, W., Woting, A., Blaut, M., Schürmann, A., & Cedernaes, J. (2016) · Molecular Metabolism · doi:10.1016/j.molmet.2016.10.003 · Cited by 324 · see citing works
“com Firmicutes:Bacteroidetes ratio; [37e40]) that have previously been associated with metabolic perturbations that also occur after acute sleep loss, including insulin resistance and dysregulation of lipid metabolism [34,41].”
BackgroundMethodInfluentialSelf-citationDepner, C. M., Melanson, E. L., Eckel, R. H., Snell-Bergeon, J. K., Perreault, L., Bergman, B. C., Higgins, J. A., Guerin, M. K., Stothard, E. R., Morton, S. J., et al. (2019) · Current Biology · doi:10.1016/j.cub.2019.01.069 · Cited by 203 · see citing works
Cedernaes, J., Schönke, M., Westholm, J. O., Mi, J., Chibalin, A., Voisin, S., Osler, M., Vogel, H., Hörnaeus, K., Dickson, S. L., et al. (2018) · Science Advances · doi:10.1126/sciadv.aar8590 · Cited by 137 · see citing works
Self-citationOrozco-Solis, R., Montellier, E., Aguilar-Arnal, L., Sato, S., Vawter, M. P., Bunney, B. G., Bunney, W. E., & Sassone-Corsi, P. (2017) · Biological Psychiatry · doi:10.1016/j.biopsych.2017.02.1176 · Cited by 119 · see citing works
Lamon, S., Morabito, A., Arentson‐Lantz, E., Knowles, O., Vincent, G. E., Condo, D., Alexander, S. E., Garnham, A., Paddon‐Jones, D., & Aisbett, B. (2021) · Physiological Reports · doi:10.14814/phy2.14660 · Cited by 110 · see citing works
Rångtell, F. H., Ekstrand, E., Rapp, L., Lagermalm, A., Liethof, L., Búcaro, M. O., Lingfors, D., Broman, J.-E., Schiöth, H. B., & Benedict, C. (2016) · Sleep Medicine · doi:10.1016/j.sleep.2016.06.016 · Cited by 83 · see citing works
Self-citationSaner, N. J., Lee, M. J.-C., Kuang, J., Pitchford, N. W., Roach, G. D., Garnham, A., Genders, A. J., Stokes, T., Schroder, E. A., Huo, Z., et al. (2021) · Molecular Metabolism · doi:10.1016/j.molmet.2020.101110 · Cited by 68 · see citing works
Sleep, circadian dysrhythmia, obesity and diabetes
Sridhar, G. R., & Sanjana, N. S. N. (2016) · World Journal of Diabetes · doi:10.4239/wjd.v7.i19.515 · Cited by 44 · see citing works
Saner, N. J., Bishop, D. J., & Bartlett, J. D. (2018) · Sleep Medicine Reviews · doi:10.1016/j.smrv.2017.01.001 · Cited by 41 · see citing works
- Authors
- Cedernaes, J., Osler, M. E., Voisin, S., Broman, J.-E., Vogel, H., Dickson, S. L., Zierath, J. R., Schiöth, H. B., & Benedict, C.
- Affiliations
- Uppsala University (SE)
- Karolinska Institutet (SE)
- German Institute of Human Nutrition (DE)
- University of Gothenburg (SE)
- Corresponding author
- Cedernaes, Jonathan
- ORCID
- Venue
- The Journal of Clinical Endocrinology & Metabolism
- Publisher
- The Endocrine Society
- Published
- 2015-09-01
- Volume
- 100
- Issue
- 9
- Pages
- E1255-E1261
- ISSN
- 0021-972X (ISSN-L)
- 1945-7197
- OpenAlex
- W1815920130
- Cited by
- 188
- References
- 14
- Citations by year
- 2026: 18 · 2025: 21 · 2024: 14 · 2023: 8 · 2022: 15 · 2021: 19 · 2020: 20 · 2019: 19 · 2018: 18 · 2017: 16 · 2016: 18 · 2015: 1 · 2014: 1
- FWCI
- 9.79
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- The Journal of Clinical Endocrinology & Metabolism (publishedVersion)
- PubMed (publishedVersion)
- Victoria University Research Repository (Victoria University) (submittedVersion)
- Funders
- Brain Research Foundation
- AFA Försäkring
- Novo Nordisk
- Vetenskapsrådet
- Magnus Bergvalls Stiftelse
- Uppsala Universitet
- Svenska Läkaresällskapet
- Science for Life Laboratory
- Novo Nordisk Fonden (NNF13OC0004819, NNF14OC0009349, NNF14OC0011493, NNF12OC1016479)
- Topics
- Life Sciences › Neuroscience › Endocrine and Autonomic Systems › Circadian rhythm and melatonin
- Social Sciences › Psychology › Experimental and Cognitive Psychology › Sleep and Work-Related Fatigue
- Life Sciences › Neuroscience › Cognitive Neuroscience › Sleep and Wakefulness Research
- Keywords
- clock genes, DNA methylation, gene expression, shift work, skeletal muscle, subcutaneous adipose tissue, CRY1, Per1, Bmal1, serum cortisol, postprandial blood glucose, metabolic health
- MeSH terms
- Blood Glucose, Circadian Rhythm, Humans, Hydrocortisone, Male, Sleep, Sleep Deprivation, Gene Expression, Muscle, Skeletal, Cross-Over Studies, Epigenesis, Genetic, Young Adult, CLOCK Proteins, ARNTL Transcription Factors, Cryptochromes, Period Circadian Proteins, Circadian Clocks
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