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Controlling Apomixis: Shared Features and Distinct Characteristics of Gene Regulation

Schmidt, A. (2020) · Genes · doi:10.3390/genes11030329 · Cited by 95 · see citing works

Epigenetic regulation and gene markers as signals of early somatic embryogenesis

Mahdavi-Darvari, F., Noor, N. M., & Ismanizan, I. (2014) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-014-0615-0 · Cited by 94 · see citing works

Induction of somatic embryogenesis in woody plants

Isah, T. (2016) · Acta Physiologiae Plantarum · doi:10.1007/s11738-016-2134-6 · Cited by 91 · see citing works

Azacitidine (5-AzaC)-treatment and mutations in DNA methylase genes affect embryogenic response and expression of the genes that are involved in somatic embryogenesis in Arabidopsis

Grzybkowska, D., Morończyk, J., Wójcikowska, B., & Gaj, M. D. (2018) · Plant Growth Regulation · doi:10.1007/s10725-018-0389-1 · Cited by 88 · see citing works

Non-Zygotic Embryogenesis in Hardwood Species

Corredoira, E., Merkle, S. A., Martínez, M. T., Toribio, M., Canhoto, J., Correia, S. I., Ballester, A., & Viéitez, A. M. (2019) · Critical Reviews in Plant Sciences · doi:10.1080/07352689.2018.1551122 · Cited by 86 · see citing works

Tissue culture-induced DNA methylation in crop plants: a review

Ghosh, A., Igamberdiev, A. U., & Debnath, S. C. (2021) · Molecular Biology Reports · doi:10.1007/s11033-020-06062-6 · Cited by 81 · see citing works

Somatic Embryogenesis: Identified Factors that Lead to Embryogenic Repression. A Case of Species of the Same Genus

Nic-Can, G. I., Galaz-Ávalos, R., De-la-Peña, C., Alcázar-Magaña, A., Wrobel, K., & Loyola-Vargas, V. (2015) · PLoS ONE · doi:10.1371/journal.pone.0126414 · Cited by 80 · see citing works

New insights into plant somatic embryogenesis: an epigenetic view

Kumar, V., & Staden, J. V. (2017) · Acta Physiologiae Plantarum · doi:10.1007/s11738-017-2487-5 · Cited by 80 · see citing works

Somatic Embryogenesis Induction in Woody Species: The Future After OMICs Data Assessment

Pais, M. S. (2019) · Frontiers in Plant Science · doi:10.3389/fpls.2019.00240 · Cited by 75 · see citing works

5-Azacytidine: A Promoter of Epigenetic Changes in the Quest to Improve Plant Somatic Embryogenesis

Osorio-Montalvo, P. M., Sáenz-Carbonell, L., & De‐la‐Peña, C. (2018) · International Journal of Molecular Sciences · doi:10.3390/ijms19103182 · Cited by 74 · see citing works

Transduction of Signals during Somatic Embryogenesis

Elhiti, M., & Stasolla, C. (2022) · Plants · doi:10.3390/plants11020178 · Cited by 72 · see citing works

Trichostatin A Triggers an Embryogenic Transition in Arabidopsis Explants via an Auxin-Related Pathway

Wójcikowska, B., Botor, M., Morończyk, J., Wójcik, A. M., Nodzyński, T., Karcz, J., & Gaj, M. D. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.01353 · Cited by 70 · see citing works

Epigenetic memory and cell fate reprogramming in plants

Birnbaum, K. D., & Roudier, F. (2016) · Regeneration · doi:10.1002/reg2.73 · Cited by 68 · see citing works

Global scale transcriptome analysis reveals differentially expressed genes involve in early somatic embryogenesis in Dimocarpus longan Lour

Chen, Y., Xu, X., Liu, Z., Zhang, Z., XuHan, X., Lin, Y., & Lai, Z. (2020) · BMC Genomics · doi:10.1186/s12864-019-6393-7 · Cited by 67 · see citing works

A methylation status analysis of the apomixis-specific region in Paspalum spp. suggests an epigenetic control of parthenogenesis

Podio, M., Cáceres, M. E., Samoluk, S. S., Seijo, G. R., Pessino, S. C., Ortiz, J. P. A., & Pupilli, F. (2014) · Journal of Experimental Botany · doi:10.1093/jxb/eru354 · Cited by 58 · see citing works

Meristem micropropagation of cassava (Manihot esculenta) evokes genome-wide changes in DNA methylation

Kitimu, S. R., Taylor, J., March, T. J., Tairo, F., Wilkinson, M. J., & Rodríguez López, C. M. (2015) · Frontiers in Plant Science · doi:10.3389/fpls.2015.00590 · Cited by 50 · see citing works

What Does the WOX Say? Review of Regulators, Targets, Partners

Tvorogova, V. E., Krasnoperova, E. Y., Potsenkovskaia, E. A., Kudriashov, A. A., Dodueva, I. E., & Lutova, L. A. (2021) · Molecular Biology · doi:10.1134/s002689332102031x · Cited by 50 · see citing works

Epi-fingerprinting and epi-interventions for improved crop production and food quality

Lopez, C. M. R., & Wilkinson, M. J. (2015) · Frontiers in Plant Science · doi:10.3389/fpls.2015.00397 · Cited by 50 · see citing works

Somaclonal Variation and Clonal Fidelity in Commercial Micropropagation: Challenges and Perspectives

Majumder, S., Igamberdiev, A. U., & Debnath, S. C. (2025) · Agronomy · doi:10.3390/agronomy15061489 · Cited by 46 · see citing works

Somatic embryogenesis of Arabica coffee in temporary immersion culture: Advances, limitations, and perspectives for mass propagation of selected genotypes

Aguilar, M. E., Wang, X., Escalona, M., Lin, Y., & Huang, L. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.994578 · Cited by 46 · see citing works

Identification of LEC1, L1L and Polycomb Repressive Complex 2 genes and their expression during the induction phase of Medicago truncatula Gaertn. somatic embryogenesis

Orłowska, A., Igielski, R., Łagowska, K., & Kępczyńska, E. (2016) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-016-1161-8 · Cited by 45 · see citing works

Gene expression and metabolite profiling of gibberellin biosynthesis during induction of somatic embryogenesis in Medicago truncatula Gaertn

Igielski, R., & Kępczyńska, E. (2017) · PLoS ONE · doi:10.1371/journal.pone.0182055 · Cited by 43 · see citing works

Expression and DNA methylation of SERK, BBM, LEC2 and WUS genes in in vitro cultures of Boesenbergia rotunda (L.) Mansf.

Karim, R., Tan, Y. S., Singh, P., Khalid, N., & Harikrishna, J. A. (2018) · Physiology and Molecular Biology of Plants · doi:10.1007/s12298-018-0566-8 · Cited by 43 · see citing works

Epigenetic changes and their relationship to somaclonal variation: A need to monitor the micropropagation of plantation crops

Azizi, P., Hanafi, M. M., Sahebi, M., Harikrishna, J. A., Taheri, S., Yassoralipour, A., & Nasehi, A. (2020) · Functional Plant Biology · doi:10.1071/fp19077 · Cited by 46 · see citing works

LEAFY COTYLEDONs (LECs): master regulators in plant embryo development

Kumar, V., Jha, P., & Staden, J. V. (2020) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-019-01752-x · Cited by 40 · see citing works

Ectopic expression of the Coffea canephora SERK1 homolog‐induced differential transcription of genes involved in auxin metabolism and in the developmental control of embryogenesis

Pérez‐Pascual, D., Jiménez‐Guillen, D., Villanueva‐Alonzo, H. D. J., Souza-Perera, R. A., Godoy-Hernández, G. D. C., & Aguilar, J. J. Z. (2018) · Physiologia Plantarum · doi:10.1111/ppl.12709 · Cited by 39 · see citing works

Establishment of a somatic embryo regeneration system and expression analysis of somatic embryogenesis-related genes in Chinese chestnut (Castanea mollissima Blume)

Lu, D., Wei, W., Zhou, W., McGuigan, L. D., Ji, F.-Y., Xiao, L., Xing, Y., Zhang, Q., Fang, K., Cao, Q., et al. (2017) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-017-1250-3 · Cited by 38 · see citing works

Insights into the Histone Acetylation-Mediated Regulation of the Transcription Factor Genes That Control the Embryogenic Transition in the Somatic Cells of Arabidopsis

Morończyk, J., Brąszewska-Zalewska, A., Wójcikowska, B., Chwiałkowska, K., Nowak, K., Wójcik, A. M., Kwaśniewski, M., & Gaj, M. D. (2022) · Cells · doi:10.3390/cells11050863 · Cited by 37 · see citing works

Genetic and epigenetic modes of the regulation of somatic embryogenesis: a review

Sivanesan, I., Nayeem, S., Venkidasamy, B., Kuppuraj, S. P., Chithraanjane, R. N., & Samynathan, R. (2022) · Biologia Futura · doi:10.1007/s42977-022-00126-3 · Cited by 37 · see citing works

The roles of epigenetic regulators in plant regeneration: Exploring patterns amidst complex conditions

Li, J., Zhang, Q., Wang, Z., & Liu, Q. (2024) · PLANT PHYSIOLOGY · doi:10.1093/plphys/kiae042 · Cited by 36 · see citing works

Genetic transformation and somaclonal variation in conifers

Sarmast, M. K. (2016) · Plant Biotechnology Reports · doi:10.1007/s11816-016-0416-5 · Cited by 36 · see citing works

YUCCA-Mediated Biosynthesis of the Auxin IAA Is Required during the Somatic Embryogenic Induction Process in Coffea canephora

Uc‐Chuc, M. A., Pérez-Hernández, C., Galaz-Ávalos, R. M., Brito-Argáez, L. G., Aguilar‐Hernández, V., & Loyola-Vargas, V. M. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21134751 · Cited by 32 · see citing works

Differences in DNA methylation, DNA structure and embryogenesis-related gene expression between embryogenic and non embryogenic lines of Pinus radiata D. don

Bravo, S., Bertin, A., Turner, A., Sepúlveda, F., Jopia, P., Parra, M. J., Castillo, R. D. P., & Hasbún, R. (2017) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-017-1242-3 · Cited by 32 · see citing works

A peak in global DNA methylation is a key step to initiate the somatic embryogenesis of coconut palm (Cocos nucifera L)

Osorio-Montalvo, P. M., De‐la‐Peña, C., Oropeza, C., Nic-Can, G. I., Córdova‐Lara, I., Castillo-Castro, E., & Sáenz-Carbonell, L. (2020) · Plant Cell Reports · doi:10.1007/s00299-020-02568-2 · Cited by 31 · see citing works

Stress responses and epigenomic instability mark the loss of somatic embryogenesis competence in grapevine

Santo, S. D., Paoli, E. D., Pagliarani, C., Amato, A., Celii, M., Boccacci, P., Zenoni, S., Gambino, G., & Perrone, I. (2021) · PLANT PHYSIOLOGY · doi:10.1093/plphys/kiab477 · Cited by 31 · see citing works

Full-Length Transcriptome Analysis of the ABCB, PIN/PIN-LIKES, and AUX/LAX Families Involved in Somatic Embryogenesis of Lilium pumilum DC. Fisch.

Song, S., Wang, Z., Ren, Y., & Sun, H. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21020453 · Cited by 30 · see citing works

Hypermethylation of Auxin-Responsive Motifs in the Promoters of the Transcription Factor Genes Accompanies the Somatic Embryogenesis Induction in Arabidopsis

Grzybkowska, D., Nowak, K., & Gaj, M. D. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21186849 · Cited by 30 · see citing works

AGL15 Promotion of Somatic Embryogenesis: Role and Molecular Mechanism

Joshi, S., Paul, P., Hartman, J. M., & Perry, S. E. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.861556 · Cited by 30 · see citing works

Cryopreservation of embryogenic tissues from mature holm oak trees

Barra-Jiménez, A., Aronen, T. S., Alegre, J., & Toribio, M. (2015) · Cryobiology · doi:10.1016/j.cryobiol.2015.02.006 · Cited by 30 · see citing works

Importance of <scp>DNA</scp> and histone methylation in <i>in vitro</i> plant propagation for crop improvement: a review

Karim, R., Nuruzzaman, M., Khalid, N., & Harikrishna, J. A. (2016) · Annals of Applied Biology · doi:10.1111/aab.12280 · Cited by 31 · see citing works

Genome-wide identification of WOX gene family in apple and a functional analysis of MdWOX4b during adventitious root formation

Xu, X., Che, Q., Cheng, C., Yuan, Y., & Yong-zhang, W. A. N. G. (2022) · Journal of Integrative Agriculture · doi:10.1016/s2095-3119(21)63768-1 · Cited by 29 · see citing works

Transcription Factors in the Regulation of Somatic Embryogenesis

Nowak, K., & Gaj, M. D. (2016) · Springer eBooks · doi:10.1007/978-3-319-33705-0_5 · Cited by 28 · see citing works

Dynamic Transcriptome Analysis Reveals Uncharacterized Complex Regulatory Pathway Underlying Genotype-Recalcitrant Somatic Embryogenesis Transdifferentiation in Cotton

Guo, H., Guo, H., Zhang, L., Fan, Y., Wu, J., Tang, Z., Zhang, Y., Fan, Y., & Zeng, F. (2020) · Genes · doi:10.3390/genes11050519 · Cited by 24 · see citing works

Genome-wide investigation of DNA methylation dynamics reveals a critical role of DNA demethylation during the early somatic embryogenesis of Dimocarpus longan Lour

Chen, X., Xu, X., Shen, X., Li, H., Zhu, C. X., Chen, R., Munir, N., Zhang, Z., Chen, Y., XuHan, X., et al. (2020) · Tree Physiology · doi:10.1093/treephys/tpaa097 · Cited by 24 · see citing works

Epigenetic modifications and miRNAs determine the transition of somatic cells into somatic embryos

Ramakrishnan, M., Zhou, M., Ceasar, S. A., Ali, D. J., Maharajan, T., Vinod, K. K., Sharma, A., Ahmad, Z., & Wei, Q. (2023) · Plant Cell Reports · doi:10.1007/s00299-023-03071-0 · Cited by 23 · see citing works

Что могут рассказать белки WOX? Обзор мишеней, регуляторов, партнеров

Tvorogova, V. E., Krasnoperova, E. Y., Kudriashov, A. A., Potsenkovskaia, E. A., Dodueva, I. E., & Lutova, L. A. (2021) · Molecular Biology · doi:10.31857/s0026898421030174 · Cited by 23 · see citing works

Indirect somatic embryogenesis in Coffea with different ploidy levels: a revisiting and updating study

Sanglard, N. A., Amaral-Silva, P. M., Sattler, M. C., de Oliveira, S. C., Cesário, L. M., Ferreira, A., Carvalho, C. R., & Clarindo, W. R. (2018) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-018-1511-9 · Cited by 23 · see citing works

In silico and in vivo analysis of ABI3 and VAL2 genes during somatic embryogenesis of Coffea arabica: competence acquisition and developmental marker genes

Freitas, N. C., Barreto, H. G., Torres, L. F., Freire, L. L., Rodrigues, L. A. Z., Diniz, L. E. C., Beijo, L. A., & Paiva, L. V. (2019) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-019-01594-7 · Cited by 22 · see citing works

An innovative automated active compound screening system allows high-throughput optimization of somatic embryogenesis in Coffea arabica

Awada, R., Verdier, D., Froger, S., Brulard, E., Maraschin, S. D. F., Etienne, H., & Breton, D. (2020) · Scientific Reports · doi:10.1038/s41598-020-57800-6 · Cited by 22 · see citing works

Small molecules, enormous functions: potential approach for overcoming bottlenecks in embryogenic tissue induction and maintenance in conifers

Guo, T., Bao, F., Fan, Y.-M., Zhang, J., & Zhao, J. (2024) · Horticulture Research · doi:10.1093/hr/uhae180 · Cited by 15 · see citing works

Embryonic abnormalities and genotoxicity induced by 2,4-dichlorophenoxyacetic acid during indirect somatic embryogenesis in Coffea

Oliveira, J. P. D. M., da Silva, A. J., Catrinck, M. N., & Clarindo, W. R. (2023) · Scientific Reports · doi:10.1038/s41598-023-36879-7 · Cited by 21 · see citing works

Dynamics of the Methylome and Transcriptome during the Regeneration of Rice

Hsu, F., Gohain, M., Allishe, A., Huang, Y., Liao, J., Kuang, L., & Chen, P. (2018) · Epigenomes · doi:10.3390/epigenomes2030014 · Cited by 21 · see citing works

Manipulating epigenetic diversity in crop plants: Techniques, challenges and opportunities

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Cellular responses of oil palm genotypes during somatic embryogenesis involve participation of procambial cells, DNA demethylation, and auxin accumulation

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Morphogenic Regulators and Their Application in Improving Plant Transformation

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Somatic Embryogenesis in Arabidopsis

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Apprehending the potential of BABY BOOM transcription factors to mitigate cotton regeneration and transformation

Yavuz, C., Tillaboeva, S., & Bakhsh, A. (2020) · Journal of Cotton Research · doi:10.1186/s42397-020-00071-3 · Cited by 19 · see citing works

In Vitro Mass Propagation of Coffee Plants (Coffea arabica L. var. Colombia) through Indirect Somatic Embryogenesis

Avila-Victor, C. M., Chaparro, V. M. O., Arjona-Suárez, E. D. J., Iracheta-Donjuán, L., Gómez‐Merino, F. C., & Robledo-Paz, A. (2023) · Plants · doi:10.3390/plants12061237 · Cited by 19 · see citing works

Homeologous regulation of Frigida-like genes provides insights on reproductive development and somatic embryogenesis in the allotetraploid Coffea arabica

Vieira, N. G., Ferrari, I. F., de Rezende, J. C., Mayer, J. L. S., & Mondego, J. M. C. (2019) · Scientific Reports · doi:10.1038/s41598-019-44666-6 · Cited by 19 · see citing works

Expression of somatic embryogenesis-related genes in sugarcane (Saccharum officinarum L.)

Maulidiya, A. U. K., Sugiharto, B., Dewanti, P., & Handoyo, T. (2020) · Journal of Crop Science and Biotechnology · doi:10.1007/s12892-020-00024-x · Cited by 18 · see citing works

DNA demethylation by transitory 5‐azacytidine treatment improves somatic embryogenesis yield for regeneration and breeding of cork oak

Carneros, E., Díaz‐Luzza, E. M., Pérez‐Pérez, Y., Solís, M., & Testillano, P. S. (2024) · Physiologia Plantarum · doi:10.1111/ppl.14143 · Cited by 18 · see citing works

Transcriptomic profiling reveals histone acetylation-regulated genes involved in somatic embryogenesis in Arabidopsis thaliana

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Plant Fidelity in Somatic Embryogenesis-Regenerated Plants

Etienne, H., Guyot, R., Beulé, T., Breitler, J., & Jaligot, E. (2016) · Springer eBooks · doi:10.1007/978-3-319-33705-0_8 · Cited by 17 · see citing works

Histology of somatic embryogenesis in Coffea arabica L.

Bartos, P. M. C., Gomes, H. T., Gomes, S. M., Filho, S. C. V., Teixeira, J. B., & Scherwinski-Pereira, J. E. (2018) · Biologia · doi:10.2478/s11756-018-0131-5 · Cited by 17 · see citing works

Epigenetic control of plant regeneration: Unraveling the role of histone methylation

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In vitro somatic embryogenesis of superior clones of robusta coffee from Lampung, Indonesia: Effect of genotypes and callus induction media

Hapsoro, D., Hamiranti, R., & Yusnita, Y. (2020) · Biodiversitas Journal of Biological Diversity · doi:10.13057/biodiv/d210849 · Cited by 16 · see citing works

Genome-Wide Analysis, Modeling, and Identification of Amino Acid Binding Motifs Suggest the Involvement of GH3 Genes during Somatic Embryogenesis of Coffea canephora

Méndez-Hernández, H. A., Quintana-Escobar, A. O., Uc‐Chuc, M. A., & Loyola-Vargas, V. M. (2021) · Plants · doi:10.3390/plants10102034 · Cited by 16 · see citing works

Global 5-methylcytosine and physiological changes are triggers of indirect somatic embryogenesis in Coffea canephora

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Transcriptome analysis of azacitidine (5-AzaC)-treatment affecting the development of early somatic embryogenesis in longan

Chen, R., Chen, X., Huo, W. J., Zheng, S., Lin, Y., & Lai, Z. (2020) · The Journal of Horticultural Science and Biotechnology · doi:10.1080/14620316.2020.1847695 · Cited by 15 · see citing works

Epigenetic mechanisms and their role in plant development

Lebedeva, M. A., Tvorogova, V. E., & Tikhodeyev, O. N. (2016) · Russian Journal of Genetics · doi:10.1134/s1022795417090083 · Cited by 15 · see citing works

Somatic Embryogenesis: Polycomb Complexes Control Cell-to-Embryo Transition

Duarte-Aké, F., Nic-Can, G. I., & De‐la‐Peña, C. (2019) · Springer eBooks · doi:10.1007/978-3-030-14760-0_13 · Cited by 15 · see citing works

Epigenetic Advances on Somatic Embryogenesis of Agronomical and Important Crops

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Integrated metabolomics and transcriptomics analysis highlight key pathways involved in the somatic embryogenesis of Darjeeling tea

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Transcriptional Regulations and Hormonal Signaling during Somatic Embryogenesis in the Coconut Tree: An Insight

Khan, F. S., Li, Z., Shi, P., Zhang, D., Htwe, Y. M., Yu, Q., & Wang, Y. (2023) · Forests · doi:10.3390/f14091800 · Cited by 13 · see citing works

Biotechnological Advances in Rubber Tree (Hevea brasiliensis Muell. Arg.) Breeding

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Direct somatic embryogenesis and related gene expression networks in leaf explants of Hippeastrum ‘Bangkok Rose’

Zeng, J., Deng, Y., Iqbal, S., Zhang, J., Wu, K., Ma, G., Li, L., Dai, G., Deng, R., Fang, L., et al. (2023) · Horticultural Plant Journal · doi:10.1016/j.hpj.2023.02.013 · Cited by 12 · see citing works

Epigenetic Advances in Somatic Embryogenesis in Sequenced Genome Crops

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An efficient bioreactor platform for scaling up the proliferation of Nordmann fir’s (Abies nordmanniana) somatic embryos

Valdiani, A., Hansen, O. K., Johannsen, V. K., & Nielsen, U. B. (2019) · International Journal of Environmental Science and Technology · doi:10.1007/s13762-019-02556-4 · Cited by 11 · see citing works

Identification of histone methylation modifiers and their expression patterns during somatic embryogenesis in Hevea brasiliensis

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Transcriptional analysis of WUSCHEL-related HOMEOBOX (WOX) genes in Coffea arabica L.

Daúde, M. M., Silva, T. W. D. S., Freitas, N. C., Ságio, S. A., Paiva, L. V., & Barreto, H. G. (2020) · Biologia · doi:10.2478/s11756-020-00460-8 · Cited by 10 · see citing works

H3K9 methylation patterns during somatic embryogenic competence expression in tamarillo (Solanum betaceum Cav.)

Cordeiro, D., Pérez‐Pérez, Y., Canhoto, J., Testillano, P. S., & Correia, S. I. (2023) · Scientia Horticulturae · doi:10.1016/j.scienta.2023.112259 · Cited by 9 · see citing works

Analysis of Two Clonal Lines (Embryogenic and Non-Embryogenic) of Agave fourcroydes Using AFLP and MSAP

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Epigenetic factors related to recalcitrance in plant biotechnology

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