The DOI matches its Crossref record; 82 of the 82 references it cites were found in a registry or an index.
Long‐term expanding human airway organoids for disease modeling
Open accessPublished version of a preprint
Abstract
Abstract Organoids are self-organizing 3D structures grown from stem cells that recapitulate essential aspects of organ structure and function. Here we describe a method to establish long-term-expanding human airway organoids from broncho-alveolar biopsies or lavage material. The pseudostratified airway organoid epithelium consists of basal cells, functional multi-ciliated cells, mucus-producing goblet cells, and CC10-secreting club cells. Airway organoids derived from cystic fibrosis (CF) patients allow assessment of CFTR function in an organoid swelling assay. Organoid culture conditions also allow gene editing as well as the derivation of various types of lung cancer organoids. Respiratory syncytial virus (RSV) infection recapitulated central disease features and dramatically increases organoid cell motility, found to be driven by the non-structural viral NS2 protein. We conclude that human airway organoids represent versatile models for the in vitro study of hereditary, malignant, and infectious pulmonary disease.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The check wasn’t confident either way, so it gives no verdict — never disputed.
In the citing paper
“Infection of murine gastric organoids by H. pylori showed increased cytosolic β-catenin levels induced by bacterially originated CagA, which led to increased proliferation in infected organoids179.”
From Organoids (2022) · cites this paper as [179]
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Fast and accurate short read alignment with Burrows-Wheeler transform
Li, H., & Durbin, R. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp324 · Cited by 58,607
Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S., et al. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0506580102 · Cited by 53,625
A framework for variation discovery and genotyping using next-generation DNA sequencing data
DePristo, M. A., Banks, E., Poplin, R. E., Garimella, K. V., Maguire, J., Hartl, C., Philippakis, A., del Angel, G., Rivas, M. A., Hanna, M., et al. (2011) · Nature Genetics · doi:10.1038/ng.806 · Cited by 11,457
Mootha, V. K., Lindgren, C. M., Eriksson, K.-F., Subramanian, A., Sihag, S., Lehar, J., Puigserver, P., Carlsson, E., Ridderstråle, M., Laurila, E., et al. (2003) · Nature Genetics · doi:10.1038/ng1180 · Cited by 10,197
Analysis of protein-coding genetic variation in 60,706 humans
Exome Aggregation Consortium, Lek, M., Karczewski, K. J., Minikel, E. V., Samocha, K. E., Banks, E., Fennell, T., O’Donnell-Luria, A. H., Ware, J. S., Hill, A. J., et al. (2016) · Nature · doi:10.1038/nature19057 · Cited by 9,587
dbSNP: the NCBI database of genetic variation
Sherry, S. T. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.1.308 · Cited by 7,502
In Vivo Activation of the p53 Pathway by Small-Molecule Antagonists of MDM2
Vassilev, L. T., Vu, B. T., Graves, B., Carvajal, D., Podlaski, F., Filipovic, Z., Kong, N., Kammlott, U., Lukacs, C., Klein, C., et al. (2004) · Science · doi:10.1126/science.1092472 · Cited by 4,661
Webb, A. K. (2006) · Cited by 4,369
Sato, T., Stange, D. E., Ferrante, M., Vries, R. G. J., van Es, J. H., van den Brink, S., van Houdt, W. J., Pronk, A., van Gorp, J., Siersema, P. D., et al. (2011) · Gastroenterology · doi:10.1053/j.gastro.2011.07.050 · Cited by 3,753
Self-citationOrganoid Models and Applications in Biomedical Research
Xinaris, C., Brizi, V., & Remuzzi, G. (2015) · The Nephron journals/Nephron journals · doi:10.1159/000433566 · Cited by 3,519
Nair, H., Nokes, D. J., Gessner, B. D., Dherani, M., Madhi, S. A., Singleton, R. J., O'Brien, K. L., Roca, A., Wright, P. F., Bruce, N., et al. (2010) · The Lancet · doi:10.1016/s0140-6736(10)60206-1 · Cited by 2,773
Prospective Derivation of a Living Organoid Biobank of Colorectal Cancer Patients
van de Wetering, M., Francies, H. E., Francis, J. M., Bounova, G., Iorio, F., Pronk, A., van Houdt, W., van Gorp, J., Taylor-Weiner, A., Kester, L., et al. (2015) · Cell · doi:10.1016/j.cell.2015.03.053 · Cited by 2,408
Self-citationOrganoid models of human and mouse ductal pancreatic cancer
Boj, S. F., Hwang, C.-I., Baker, L. A., Chio, I. I. C., Engle, D. D., Corbo, V., Jager, M., Ponz-Sarvise, M., Tiriac, H., Spector, M. S., et al. (2015) · Cell · doi:10.1016/j.cell.2014.12.021 · Cited by 2,150
Self-citationPatient-derived organoids model treatment response of metastatic gastrointestinal cancers
Vlachogiannis, G., Hedayat, S., Vatsiou, A., Jamin, Y., Fernández-Mateos, J., Khan, K., Lampis, A., Eason, K., Huntingford, I., Burke, R., et al. (2018) · Science · doi:10.1126/science.aao2774 · Cited by 2,096
Non-small-cell lung cancers: a heterogeneous set of diseases
Chen, Z., Brainson, C. F., Hammerman, P. S., Kim, C. F., & Wong, K. (2014) · Nature reviews. Cancer · doi:10.1038/nrc3775 · Cited by 1,982
Long-Term Culture of Genome-Stable Bipotent Stem Cells from Adult Human Liver
Huch, M., Gehart, H., van Boxtel, R., Hamer, K., Blokzijl, F., Verstegen, M. M. A., Ellis, E., van Wenum, M., Fuchs, S. A., de Ligt, J., et al. (2015) · Cell · doi:10.1016/j.cell.2014.11.050 · Cited by 1,619
Self-citationBasal cells as stem cells of the mouse trachea and human airway epithelium
Rock, J. R., Onaitis, M. W., Rawlins, E. L., Lu, Y., Clark, C. P., Xue, Y., Randell, S. H., & Hogan, B. L. M. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0906850106 · Cited by 1,591
Schwank, G., Koo, B.-K., Sasselli, V., Dekkers, J. F., Heo, I., Demircan, T., Sasaki, N., Boymans, S., Cuppen, E., van der Ent, C. K., et al. (2013) · Cell Stem Cell · doi:10.1016/j.stem.2013.11.002 · Cited by 1,424
Self-citationKim, J. H., Lee, S. R., Li, L.-H., Park, H., Park, J.-H., Lee, K. Y., Kim, M., Shin, B. A., & Choi, S. (2011) · PLoS ONE · doi:10.1371/journal.pone.0018556 · Cited by 1,367
Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq
Treutlein, B., Brownfield, D. G., Wu, A. R., Neff, N. F., Mantalas, G. L., Espinoza, F. H., Desai, T. J., Krasnow, M. A., & Quake, S. R. (2014) · Nature · doi:10.1038/nature13173 · Cited by 1,342
A revised airway epithelial hierarchy includes CFTR-expressing ionocytes
Montoro, D. T., Haber, A. L., Biton, M., Vinarsky, V., Lin, B., Birket, S. E., Yuan, F., Chen, S., Leung, H. M., Villoria, J., et al. (2018) · Nature · doi:10.1038/s41586-018-0393-7 · Cited by 1,206
Dijkstra, K. K., Cattaneo, C. M., Weeber, F., Chalabi, M., van de Haar, J., Fanchi, L. F., Slagter, M., van der Velden, D. L., Kaing, S., Kelderman, S., et al. (2018) · Cell · doi:10.1016/j.cell.2018.07.009 · Cited by 1,135
Self-citationSequential cancer mutations in cultured human intestinal stem cells
Drost, J., van Jaarsveld, R. H., Ponsioen, B., Zimberlin, C., van Boxtel, R., Buijs, A., Sachs, N., Overmeer, R. M., Offerhaus, G. J., Begthel, H., et al. (2015) · Nature · doi:10.1038/nature14415 · Cited by 1,067
Self-citationA single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte
Plasschaert, L. W., Žilionis, R., Choo-Wing, R., Savova, V., Knehr, J., Roma, G., Klein, A. M., & Jaffe, A. B. (2018) · Nature · doi:10.1038/s41586-018-0394-6 · Cited by 1,047
A functional CFTR assay using primary cystic fibrosis intestinal organoids
Dekkers, J. F., Wiegerinck, C. L., de Jonge, H. R., Bronsveld, I., Janssens, H. M., de Winter-de Groot, K. M., Brandsma, A. M., de Jong, N. W. M., Bijvelds, M. J. C., Scholte, B. J., et al. (2013) · Nature Medicine · doi:10.1038/nm.3201 · Cited by 999
Self-citationKim, B. J., Nam, J., Kim, K. H., Joo, M., Ha, T. S., Weon, K.-Y., Choi, S., Jun, J. Y., Park, E., Wie, J., et al. (2014) · Cellular Physiology and Biochemistry · doi:10.1159/000366306 · Cited by 886
In vitro generation of human pluripotent stem cell derived lung organoids
Dye, B. R., Hill, D. R., Ferguson, M. A. H., Tsai, Y.-H., Nagy, M. S., Dyal, R., Wells, J. M., Mayhew, C. N., Nattiv, R., Klein, O. D., et al. (2015) · eLife · doi:10.7554/elife.05098 · Cited by 846
Identification of Multipotent Luminal Progenitor Cells in Human Prostate Organoid Cultures
Karthaus, W. R., Iaquinta, P. J., Drost, J., Gracanin, A., van Boxtel, R., Wongvipat, J., Dowling, C., Gao, D., Begthel, H., Sachs, N., et al. (2014) · Cell · doi:10.1016/j.cell.2014.08.017 · Cited by 739
Self-citationThe Global Burden of Respiratory Disease
Ferkol, T., & Schraufnagel, D. E. (2014) · Annals of the American Thoracic Society · doi:10.1513/annalsats.201311-405ps · Cited by 735
Respiratory Syncytial Virus—A Comprehensive Review
Borchers, A. T., Chang, C. C.-C., Gershwin, M. E., & Gershwin, L. J. (2013) · Clinical Reviews in Allergy & Immunology · doi:10.1007/s12016-013-8368-9 · Cited by 666
The R-spondin/Lgr5/Rnf43 module: regulator of Wnt signal strength
de Lau, W., Peng, W. C., Gros, P., & Clevers, H. (2014) · Genes & Development · doi:10.1101/gad.235473.113 · Cited by 656
Self-citationSosnay, P. R., Siklosi, K. R., Van Goor, F., Kaniecki, K., Yu, H., Sharma, N., Ramalho, A. S., Amaral, M. D., Dorfman, R., Zielenski, J., et al. (2013) · Nature Genetics · doi:10.1038/ng.2745 · Cited by 630
Well-Differentiated Human Airway Epithelial Cell Cultures
Fulcher, M. L., Gabriel, S. E., Burns, K. A., Yankaskas, J. R., & Randell, S. H. (2004) · Humana Press eBooks · doi:10.1385/1-59259-861-7:183 · Cited by 618
A three-dimensional model of human lung development and disease from pluripotent stem cells
Chen, Y., Huang, S. X. L., de Carvalho, A. L. R. T., Ho, S., Islam, M. N., Volpi, S., Notarangelo, L. D., Ciancanelli, M. J., Casanova, J., Bhattacharya, J., et al. (2017) · Nature Cell Biology · doi:10.1038/ncb3510 · Cited by 606
Ratjen, F. A., Bell, S. C., Rowe, S. M., Goss, C. H., Quittner, A. L., & Bush, A. (2015) · Nature Reviews Disease Primers · doi:10.1038/nrdp.2015.10 · Cited by 575
de Jager, W., Velthuis, H. T., Prakken, B. J., Kuis, W., & Rijkers, G. T. (2003) · Clinical and Vaccine Immunology · doi:10.1128/cdli.10.1.133-139.2003 · Cited by 569
Efficient generation of lung and airway epithelial cells from human pluripotent stem cells
Huang, S. X. L., Islam, M. N., O’Neill, J. D., Hu, Z., Yang, Y., Chen, Y., Mumau, M. D., Green, M. D., Vunjak‐Novakovic, G., Bhattacharya, J., et al. (2013) · Nature Biotechnology · doi:10.1038/nbt.2754 · Cited by 565
Dekkers, J. F., Berkers, G., Kruisselbrink, E., Vonk, A., de Jonge, H. R., Janssens, H. M., Bronsveld, I., van de Graaf, E. A., Nieuwenhuis, E. E. S., Houwen, R. H. J., et al. (2016) · Science Translational Medicine · doi:10.1126/scitranslmed.aad8278 · Cited by 548
Self-citationTumor Organoids as a Pre-clinical Cancer Model for Drug Discovery
Weeber, F., Ooft, S., Dijkstra, K. K., & Voest, E. E. (2017) · Cell chemical biology · doi:10.1016/j.chembiol.2017.06.012 · Cited by 501
Self-citationLung organoids: current uses and future promise
Barkauskas, C. E., Chung, M.-I., Fioret, B. A., Gao, X., Katsura, H., & Hogan, B. L. M. (2017) · Development · doi:10.1242/dev.140103 · Cited by 447
McCauley, K. B., Hawkins, F. J., Serra, M., Thomas, D. C., Jacob, A., & Kotton, D. N. (2017) · Cell stem cell · doi:10.1016/j.stem.2017.03.001 · Cited by 444
Wong, A. P., Bear, C. E., Chin, S., Pasceri, P., Thompson, T., Huan, L., Ratjen, F. A., Ellis, J., & Rossant, J. (2012) · Nature Biotechnology · doi:10.1038/nbt.2328 · Cited by 422
Dual SMAD Signaling Inhibition Enables Long-Term Expansion of Diverse Epithelial Basal Cells
Mou, H., Vinarsky, V., Tata, P. R., Brazauskas, K., Choi, S. H., Crooke, A. K., Zhang, B., Solomon, G. M., Turner, B., Bihler, H. J., et al. (2016) · Cell stem cell · doi:10.1016/j.stem.2016.05.012 · Cited by 387
Modelling Cryptosporidium infection in human small intestinal and lung organoids
Heo, I., Dutta, D., Schaefer, D. A., Iakobachvili, N., Artegiani, B., Sachs, N., Boonekamp, K. E., Bowden, G. D., Hendrickx, A. P. A., Willems, R. J. L., et al. (2018) · Nature Microbiology · doi:10.1038/s41564-018-0177-8 · Cited by 386
Self-citationControlled gene expression in primary Lgr5 organoid cultures
Koo, B.-K., Stange, D. E., Sato, T., Karthaus, W., Farin, H. F., Huch, M., van Es, J. H., & Clevers, H. (2012) · Nature Methods · doi:10.1038/nmeth.1802 · Cited by 320
Self-citationDifferentiated human airway organoids to assess infectivity of emerging influenza virus
Zhou, J., Li, C., Sachs, N., Chiu, M. C., Wong, B. H., Chu, H., Poon, V. K., Wang, D., Zhao, X., Wen, L., et al. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1806308115 · Cited by 316
Self-citationIL-6/STAT3 promotes regeneration of airway ciliated cells from basal stem cells
Tadokoro, T., Wang, Y., Barak, L. S., Bai, Y., Randell, S. H., & Hogan, B. L. M. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1409781111 · Cited by 294
Lo, M. S., Brazas, R. M., & Holtzman, M. J. (2005) · Journal of Virology · doi:10.1128/jvi.79.14.9315-9319.2005 · Cited by 284
Nikolić, M., Caritg, O., Jeng, Q., Johnson, J.-A., Sun, D., Howell, K. J., Brady, J., Laresgoiti, U., Allen, G. E., Butler, R., et al. (2017) · eLife · doi:10.7554/elife.26575 · Cited by 279
The Genome of the Netherlands: design, and project goals
Boomsma, D. I., Wijmenga, C., Slagboom, P. E., Swertz, M. A., Karssen, L. C., Abdellaoui, A., Ye, K., Guryev, V., Vermaat, M., van Dijk, F., et al. (2013) · European Journal of Human Genetics · doi:10.1038/ejhg.2013.118 · Cited by 249
Konishi, S., Gotoh, S., Tateishi, K., Yamamoto, Y., Korogi, Y., Nagasaki, T., Matsumoto, H., Muro, S., Hirai, T., Ito, I., et al. (2015) · Stem Cell Reports · doi:10.1016/j.stemcr.2015.11.010 · Cited by 248
Hallak, L. K., Collins, P. L., Knudson, W., & Peeples, M. E. (2000) · Virology · doi:10.1006/viro.2000.0293 · Cited by 234
Differential Response of Dendritic Cells to Human Metapneumovirus and Respiratory Syncytial Virus
Guerrero-Plata, A., Casola, A., Suárez, G., Yu, X., Spetch, L., Peeples, M. E., & Garofalo, R. P. (2005) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/rcmb.2005-0287oc · Cited by 193
Human airway organoid engineering as a step toward lung regeneration and disease modeling
Tan, Q., Choi, K. M., Sicard, D., & Tschumperlin, D. J. (2017) · Biomaterials · doi:10.1016/j.biomaterials.2016.10.046 · Cited by 191
Namkung, W., Yao, Z., Finkbeiner, W. E., & Verkman, A. S. (2011) · The FASEB Journal · doi:10.1096/fj.11-191627 · Cited by 179
Do Airway Epithelium Air–Liquid Cultures Represent the In Vivo Airway Epithelium Transcriptome?
Dvořák, A., Tilley, A. E., Shaykhiev, R., Wang, R., & Crystal, R. G. (2010) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/rcmb.2009-0453oc · Cited by 175
Virtual nanoscopy: Generation of ultra-large high resolution electron microscopy maps
Faas, F. G. A., Avramut, M. C., van den Berg, B. M., Mommaas, A. M., Koster, A. J., & Ravelli, R. B. G. (2012) · The Journal of Cell Biology · doi:10.1083/jcb.201201140 · Cited by 169
Hui, K. P. Y., Ching, R. H. H., Chan, S. K. H., Nicholls, J. M., Sachs, N., Clevers, H. C., Peiris, M. J. S., & Chan, M. C. W. (2018) · The Lancet Respiratory Medicine · doi:10.1016/s2213-2600(18)30236-4 · Cited by 140
Self-citationBMP signaling and cellular dynamics during regeneration of airway epithelium from basal progenitors
Tadokoro, T., Gao, X., Hong, C. C., Hotten, D. F., & Hogan, B. L. M. (2016) · Development · doi:10.1242/dev.126656 · Cited by 137
Neuberger, T. J., Burton, B., Clark, H., & Goor, F. V. (2011) · Methods in molecular biology · doi:10.1007/978-1-61779-117-8_4 · Cited by 135
RSV-encoded NS2 promotes epithelial cell shedding and distal airway obstruction
Liesman, R. M., Buchholz, U. J., Luongo, C., Yang, L., Proia, A. D., DeVincenzo, J. P., Collins, P. L., & Pickles, R. J. (2014) · Journal of Clinical Investigation · doi:10.1172/jci72948 · Cited by 135
RNA-Seq quantification of the human small airway epithelium transcriptome
Hackett, N. R., Butler, M. W., Shaykhiev, R., Salit, J., Omberg, L., Rodríguez-Flores, J. L., Mezey, J. G., Strulovici‐Barel, Y., Wang, G., Didon, L., et al. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-82 · Cited by 120
Teng, M. N., & Collins, P. L. (1999) · Journal of Virology · doi:10.1128/jvi.73.1.466-473.1999 · Cited by 116
Neutrophils in respiratory syncytial virus infection: A target for asthma prevention
Geerdink, R. J., Pillay, J., Meyaard, L., & Bont, L. (2015) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2015.06.034 · Cited by 109
Self-citationHuang, K., Incognito, L., Cheng, X., Ulbrandt, N. D., & Wu, H. (2010) · Journal of Virology · doi:10.1128/jvi.02699-09 · Cited by 101
Respiratory Syncytial Virus Can Infect Basal Cells and Alter Human Airway Epithelial Differentiation
Persson, B. D., Jaffe, A. B., Fearns, R., & Danahay, H. L. (2014) · PLoS ONE · doi:10.1371/journal.pone.0102368 · Cited by 97
Hild, M., & Jaffe, A. B. (2016) · Current Protocols in Stem Cell Biology · doi:10.1002/cpsc.1 · Cited by 97
Deben, C., Deschoolmeester, V., Lardon, F., Rolfo, C. D., & Pauwels, P. (2015) · Critical Reviews in Oncology/Hematology · doi:10.1016/j.critrevonc.2015.11.019 · Cited by 86
Amatngalim, G. D., van Wijck, Y., de Mooij-Eijk, Y., Verhoosel, R. M., Harder, J., Lekkerkerker, A., Janssen, R. A. J., & Hiemstra, P. S. (2015) · The Journal of Immunology · doi:10.4049/jimmunol.1402169 · Cited by 85
Self-citationDevelopment of a Primary Human Co-Culture Model of Inflamed Airway Mucosa
Yonker, L. M., Mou, H., Chu, K. K., Pazos, M. A., Leung, H., Cui, D., Ryu, J., Hibbler, R. M., Eaton, A. D., Ford, T. N., et al. (2017) · Scientific Reports · doi:10.1038/s41598-017-08567-w · Cited by 71
Kuk, K. N., & Taylor‐Cousar, J. L. (2015) · Therapeutic Advances in Respiratory Disease · doi:10.1177/1753465815601934 · Cited by 67
The TMEM16A chloride channel as an alternative therapeutic target in cystic fibrosis
Sondo, E., Caci, E., & Galietta, L. J. V. (2014) · The International Journal of Biochemistry & Cell Biology · doi:10.1016/j.biocel.2014.03.022 · Cited by 64
Hox5 Genes Regulate the Wnt2/2b-Bmp4-Signaling Axis during Lung Development
Hrycaj, S., Dye, B. R., Baker, N. C., Larsen, B. M., Burke, A. C., Spence, J. R., & Wellik, D. M. (2015) · Cell Reports · doi:10.1016/j.celrep.2015.07.020 · Cited by 60
The lung‐specific proteome defined by integration of transcriptomics and antibody‐based profiling
Lindskog, C., Fagerberg, L., Hallström, B. M., Edlund, K., Hellwig, B., Rahnenführer, J., Kampf, C., Uhlén, M., Pontén, F., & Micke, P. (2014) · The FASEB Journal · doi:10.1096/fj.14-254862 · Cited by 60
Wet medisch-wetenschappelijk onderzoek met mensen
Beerepoot, C. C., van Donk, R. N., Hermans, H. E. G. M. C., & Linders, J. J. M. (2010) · Bohn Stafleu van Loghum eBooks · doi:10.1007/978-90-313-8820-2_33 · Cited by 59
FGFR2 is required for airway basal cell self-renewal and terminal differentiation
Balasooriya, G. I., Goschorska, M., Piddini, E., & Rawlins, E. L. (2017) · Development · doi:10.1242/dev.135681 · Cited by 53
van der Sanden, S. M. G., Sachs, N., Koekkoek, S. M., Koen, G., Pajkrt, D., Clevers, H. C., & Wolthers, K. C. (2018) · Emerging Microbes & Infections · doi:10.1038/s41426-018-0077-2 · Cited by 52
Self-citationIntestinal organoids and personalized medicine in cystic fibrosis
Noordhoek, J. J., Gulmans, V. A. M., van der Ent, C. K., & Beekman, J. M. (2016) · Current Opinion in Pulmonary Medicine · doi:10.1097/mcp.0000000000000315 · Cited by 49
Self-citationThe many faces of p38 mitogen-activated protein kinase in progenitor/stem cell differentiation
Oeztuerk-Winder, F., & Ventura, J. (2012) · Biochemical Journal · doi:10.1042/bj20120401 · Cited by 48
Benali, R., Tournier, J. M., Chevillard, M., Zahm, J., Klossek, J. M., Hinnrasky, J., Gaillard, D. A., Maquart, F., & Puchelle, É. (1993) · American Journal of Physiology-Lung Cellular and Molecular Physiology · doi:10.1152/ajplung.1993.264.2.l183 · Cited by 36
De Wet medisch–wetenschappelijk onderzoek met mensen
van Wijmen, F. C. B. (1998) · Tijdschrift voor Gezondheidsrecht · doi:10.1007/bf03055777 · Cited by 13
[A welcome guide for evaluating medical research involving human subjects].
Borst-Eilers, E. (2003) · PubMed · Cited by 4
Flagged first, then by citations
Cited by
Sorted by citations
Human organoids: model systems for human biology and medicine
Kim, J., Koo, B.-K., & Knoblich, J. A. (2020) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-020-0259-3 · Cited by 2,187
SARS-CoV-2 productively infects human gut enterocytes
Lamers, M. M., Beumer, J., van der Vaart, J., Knoops, K., Puschhof, J., Breugem, T. I., Ravelli, R. B. G., Paul van Schayck, J., Mykytyn, A. Z., Duimel, H. Q., et al. (2020) · Science · doi:10.1126/science.abc1669 · Cited by 1,573
Self-citationHofer, M., & Lutolf, M. P. (2021) · Nature Reviews Materials · doi:10.1038/s41578-021-00279-y · Cited by 1,184
Altered TMPRSS2 usage by SARS-CoV-2 Omicron impacts infectivity and fusogenicity
Meng, B., Abdullahi, A., Ferreira, I. A. T. M., Goonawardane, N., Saito, A., Kimura, I., Yamasoba, D., Gerber, P. P., Fatihi, S., Rathore, S., et al. (2022) · Nature · doi:10.1038/s41586-022-04474-x · Cited by 1,146
Dijkstra, K. K., Cattaneo, C. M., Weeber, F., Chalabi, M., van de Haar, J., Fanchi, L. F., Slagter, M., van der Velden, D. L., Kaing, S., Kelderman, S., et al. (2018) · Cell · doi:10.1016/j.cell.2018.07.009 · Cited by 1,135
“To select for tumor organoids, we applied the MDM-2 inhibitor Nutlin-3a to selectively grow out p53 mutant cells of this sample, resulting in a pure tumor organoid population (Sachs et al., 2018).”
InfluentialSelf-citation
Metadata
- Authors
- Sachs, N., Papaspyropoulos, A., Zomer‐van Ommen, D. D., Heo, I., Böttinger, L., Klay, D., Weeber, F., Huelsz‐Prince, G., Iakobachvili, N., Amatngalim, G. D., de Ligt, J., van Hoeck, A., Proost, N., Viveen, M. C., Lyubimova, A., Teeven, L., Derakhshan, S., Korving, J., Begthel, H., Dekkers, J. F., Kumawat, K., Ramos, E., van Oosterhout, M. F., Offerhaus, G. J., Wiener, D. J., Olimpio, E. P., Dijkstra, K. K., Smit, E. F., van der Linden, M., Jaksani, S., van de Ven, M., Jonkers, J., Rios, A. C., Voest, E. E., van Moorsel, C. H., van der Ent, C. K., Cuppen, E., van Oudenaarden, A., Coenjaerts, F. E., Meyaard, L., Bont, L. J., Peters, P. J., Tans, S. J., van Zon, J. S., Boj, S. F., Vries, R. G., Beekman, J. M., & Clevers, H.
- Affiliations
- University Medical Center Utrecht (NL)
- St. Antonius Ziekenhuis (NL)
- The Netherlands Cancer Institute (NL)
- Institute for Atomic and Molecular Physics (NL)
- Maastricht University (NL)
- Hubrecht Institute for Developmental Biology and Stem Cell Research (NL)
- Princess Máxima Center (NL)
- Royal Netherlands Academy of Arts and Sciences (NL)
- Corresponding author
- Clevers, Hans
- ORCID
- Sachs, Norman
- Papaspyropoulos, Angelos
- Klay, Dymph
- Weeber, Fleur
- Iakobachvili, Nino
- Amatngalim, Gimano D
- de Ligt, Joep
- van Hoeck, Arne
- Proost, Natalie
- Begthel, Harry
- Ramos, Emilio
- Offerhaus, G Johan
- Wiener, Dominique J
- Dijkstra, Krijn K
- Smit, Egbert F
- Jonkers, Jos
- Rios, Anne C
- Voest, Emile E
- Cuppen, Edwin
- Coenjaerts, Frank E
- Meyaard, Linde
- Bont, Louis J
- Peters, Peter J
- Tans, Sander J
- Boj, Sylvia F
- Vries, Robert G
- Beekman, Jeffrey M
- Clevers, Hans
- Venue
- The EMBO Journal
- Published
- 2019-01-14
- Volume
- 38
- Issue
- 4
- ISSN
- 0261-4189 (ISSN-L)
- 1460-2075
- PMC
- PMC6376275
- OpenAlex
- W2799736418
- Cited by
- 1,082
- References
- 82
- Citations by year
- 2026: 126 · 2025: 178 · 2024: 137 · 2023: 159 · 2022: 157 · 2021: 182 · 2020: 104 · 2019: 30
- FWCI
- 86.42
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- The EMBO Journal (publishedVersion, cc-by-nc-nd)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- Europe PMC (PubMed Central) (publishedVersion, other-oa)
- PubMed Central (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- Research Publications (Maastricht University) (publishedVersion, cc-by-nc-nd)
- KNAW research portal (Royal Academy of Art and Sciences (KNAW)) (publishedVersion, other-oa)
- KNAW Research Portal (The Royal Netherlands Academy of Arts and Sciences) (publishedVersion, other-oa)
- AMOLF Institutional Repository (AMOLF) (submittedVersion, other-oa)
- Data Archiving and Networked Services (DANS) (submittedVersion, cc-by-nc-nd)
- Utrecht University Repository (Utrecht University) (submittedVersion, other-oa)
- Research Publications (Maastricht University) (submittedVersion, cc-by-nc-nd)
- Utrecht University Repository (Utrecht University) (submittedVersion, cc-by-nc-nd)
- Funders
- ZonMw (114021012, 40‐00812‐98‐14103, 91615182)
- Human Frontier Science Program (CDA00076/2014‐C)
- Prof. Dr. Jaap Swieringa Foundation (stAH‐CvM‐HI‐HC)
- Dutch Cystic Fibrosis Society (HIT‐CF)
- SU2C (SU2C‐AACR‐DT‐12‐14)
- KWF Kankerbestrijding (2014‐7006)
- Nederlandse Organisatie voor Wetenschappelijk Onderzoek (680‐47‐529, 834.11.002)
- Topics
- Health Sciences › Medicine › Pulmonary and Respiratory Medicine › Cystic Fibrosis Research Advances
- Health Sciences › Medicine › Pulmonary and Respiratory Medicine › Neonatal Respiratory Health Research
- Health Sciences › Medicine › Surgery › Tissue Engineering and Regenerative Medicine
- Keywords
- airway organoids, cystic fibrosis, CFTR function, lung cancer, metastasis, respiratory syncytial virus, NS2 protein, neutrophil recruitment, disease modeling, Clara cells, ciliated cells
- MeSH terms
- Animals, Carcinoma, Non-Small-Cell Lung, Cells, Cultured, Cystic Fibrosis, Disease Models, Animal, Drug Screening Assays, Antitumor, Epithelial Cells, Female, Humans, Lung Neoplasms, Male, Organ Culture Techniques, Organoids, Respiratory Syncytial Viruses, Respiratory System, Mice, SCID, Mice, Inbred NOD, Respiratory Syncytial Virus Infections, Cystic Fibrosis Transmembrane Conductance Regulator, Xenograft Model Antitumor Assays, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review