Gastrointestinal interaction between dietary amino acids and gut microbiota: with special emphasis on host nutrition

An obesity-associated gut microbiome with increased capacity for energy harvest

Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., & Gordon, J. I. (2006) · Nature · doi:10.1038/nature05414 · Cited by 12,444 · see citing works

Structure, function and diversity of the healthy human microbiome

The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11234 · Cited by 11,726 · see citing works

Human gut microbes associated with obesity

Ley, R. E., Turnbaugh, P. J., Klein, S., & Gordon, J. I. (2006) · Nature · doi:10.1038/4441022a · Cited by 8,785 · see citing works

A core gut microbiome in obese and lean twins

Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., et al. (2009) · Nature · doi:10.1038/nature07540 · Cited by 7,823 · see citing works

A metagenome-wide association study of gut microbiota in type 2 diabetes

Qin, J., Li, Y., Cai, Z., Li, S., Zhu, J., Zhang, F., Liang, S., Zhang, W., Guan, Y., Shen, D., et al. (2012) · Nature · doi:10.1038/nature11450 · Cited by 6,762 · see citing works

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

De Filippo, C., Cavalieri, D., Di Paola, M., Ramazzotti, M., Poullet, J. B., Massart, S., Collini, S., Pieraccini, G., & Lionetti, P. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1005963107 · Cited by 5,579 · see citing works

Metagenomic Analysis of the Human Distal Gut Microbiome

Gill, S. R., Pop, M., DeBoy, R. T., Eckburg, P. B., Turnbaugh, P. J., Samuel, B. S., Gordon, J. I., Relman, D. A., Fraser-Liggett, C. M., & Nelson, K. E. (2006) · Science · doi:10.1126/science.1124234 · Cited by 4,699 · see citing works

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

Frank, D. N., St. Amand, A. L., Feldman, R. A., Boedeker, E. C., Harpaz, N., & Pace, N. R. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0706625104 · Cited by 4,611 · see citing works

Amino acids: Metabolism, functions, and nutrition

Wu, G. (2009) · Amino Acids · doi:10.1007/s00726-009-0269-0 · Cited by 3,004 · see citing works

Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome

Vrieze, A., Van Nood, E., Holleman, F., Salojärvi, J., Kootte, R. S., Bartelsman, J. F. W. M., Dallinga–Thie, G. M., Ackermans, M. T., Serlie, M. J., Oozeer, R., et al. (2012) · Gastroenterology · doi:10.1053/j.gastro.2012.06.031 · Cited by 2,913 · see citing works

Colonic Health: Fermentation and Short Chain Fatty Acids

Wong, J. M. W., de Souza, R., Kendall, C. W. C., Emam, A., & Jenkins, D. J. A. (2006) · Journal of Clinical Gastroenterology · doi:10.1097/00004836-200603000-00015 · Cited by 2,739 · see citing works

MICROBIAL ECOLOGY OF THE GASTROINTESTINAL TRACT

Savage, D. C. (1977) · Annual Review of Microbiology · doi:10.1146/annurev.mi.31.100177.000543 · Cited by 2,436 · see citing works

Intestinal inflammation targets cancer-inducing activity of the microbiota

Arthur, J. C., Perez-Chanona, E., Mühlbauer, M., Tomkovich, S., Uronis, J. M., Fan, T.-J., Campbell, B. J., Abujamel, T., Dogan, B., Rogers, A. B., et al. (2012) · Science · doi:10.1126/science.1224820 · Cited by 2,263 · see citing works

Human gut microbiota in obesity and after gastric bypass

Zhang, H., DiBaise, J. K., Zuccolo, A., Kudrna, D., Braidotti, M., Yu, Y., Parameswaran, P., Crowell, M. D., Wing, R., Rittmann, B. E., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0812600106 · Cited by 1,880 · see citing works

The gut microbiota suppresses insulin-mediated fat accumulation via the short-chain fatty acid receptor GPR43

Kimura, I., Ozawa, K., Inoue, D., Imamura, T., Kimura, K., Maeda, T., Terasawa, K., Kashihara, D., Hirano, K., Tani, T., et al. (2013) · Nature Communications · doi:10.1038/ncomms2852 · Cited by 1,512 · see citing works

Comparison of the gastrointestinal anatomy, physiology, and biochemistry of humans and commonly used laboratory animals

Kararli, T. T. (1995) · Biopharmaceutics & Drug Disposition · doi:10.1002/bdd.2510160502 · Cited by 1,461 · see citing works

Surviving the Acid Test: Responses of Gram-Positive Bacteria to Low pH

Cotter, P. D., & Hill, C. (2003) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.67.3.429-453.2003 · Cited by 1,378 · see citing works

Arginine metabolism and nutrition in growth, health and disease

Wu, G., Bazer, F. W., Davis, T. A., Kim, S. W., Li, P., Marc Rhoads, J., Carey Satterfield, M., Smith, S. B., Spencer, T. E., & Yin, Y. (2009) · Amino Acids · doi:10.1007/s00726-008-0210-y · Cited by 1,362 · see citing works

Revealing the Bacterial Butyrate Synthesis Pathways by Analyzing (Meta)genomic Data

Vital, M., Howe, A. C., & Tiedje, J. M. (2014) · mBio · doi:10.1128/mbio.00889-14 · Cited by 1,189 · see citing works

Bacteria, Colonic Fermentation, and Gastrointestinal Health

Macfarlane, G. T., & Macfarlane, S. (2012) · Journal of AOAC INTERNATIONAL · doi:10.5740/jaoacint.sge_macfarlane · Cited by 970 · see citing works

Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces

Duncan, S. H., Belenguer, A., Holtrop, G., Johnstone, A. M., Flint, H. J., & Lobley, G. E. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.02340-06 · Cited by 941 · see citing works

The role of microbial amino acid metabolism in host metabolism

Neis, E., Dejong, C., & Rensen, S. (2015) · Nutrients · doi:10.3390/nu7042930 · Cited by 920 · see citing works

Invited review: Amino acid bioavailability and digestibility in pig feed ingredients: Terminology and application

Stein, H. H., Sève, B., Fuller, M. F., Moughan, P. J., & de Lange, C. F. M. (2007) · Journal of Animal Science · doi:10.2527/jas.2005-742 · Cited by 796 · see citing works

Plant proteins in relation to human protein and amino acid nutrition

Young, V., & Pellett, P. (1994) · The American Journal of Clinical Nutrition · doi:10.1093/ajcn/59.5.1203s · Cited by 717 · see citing works

Physiology and pathophysiology of intestinal absorption

Caspary, W. (1992) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/55.1.299s · Cited by 612 · see citing works

Amino acid metabolism in intestinal bacteria: links between gut ecology and host health

Dai, Z. (2010) · Frontiers in bioscience · doi:10.2741/3820 · Cited by 563 · see citing works

Fermentation of mucins and plant polysaccharides by anaerobic bacteria from the human colon

Salyers, A. A., West, S. E. H., Vercellotti, J. R., & Wilkins, T. D. (1977) · Applied and Environmental Microbiology · doi:10.1128/aem.34.5.529-533.1977 · Cited by 471 · see citing works

Effects of amino acid-derived luminal metabolites on the colonic epithelium and physiopathological consequences

Blachier, F., Mariotti, F., Huneau, J. F., & Tomé, D. (2007) · Amino Acids · doi:10.1007/s00726-006-0477-9 · Cited by 452 · see citing works

Amino Acid Degradation by Anaerobic Bacteria

Barker, H. A. (1981) · Annual Review of Biochemistry · doi:10.1146/annurev.bi.50.070181.000323 · Cited by 447 · see citing works

The optimum dietary amino acid pattern for growing pigs

Wang, T. C., & Fuller, M. F. (1989) · British Journal Of Nutrition · doi:10.1079/bjn19890009 · Cited by 404 · see citing works

Protein Digestion in Human Intestine as Reflected in Luminal, Mucosal, and Plasma Amino Acid Concentrations after Meals

Adibi, S. A., & Mercer, D. W. (1973) · Journal of Clinical Investigation · doi:10.1172/jci107335 · Cited by 399 · see citing works

Contribution of microbial amino acids to amino acid homeostasis of the host

Metges, C. C. (2000) · The Journal of Nutrition · doi:10.1093/jn/130.7.1857s · Cited by 391 · see citing works

Escherichia coli Glutamate- and Arginine-Dependent Acid Resistance Systems Increase Internal pH and Reverse Transmembrane Potential

Richard, H., & Foster, J. W. (2004) · Journal of Bacteriology · doi:10.1128/jb.186.18.6032-6041.2004 · Cited by 388 · see citing works

The gut microbiota modulates host amino acid and glutathione metabolism in mice

Mardinoglu, A., Shoaie, S., Bergentall, M., Ghaffari, P., Zhang, C., Larsson, E., Bäckhed, F., & Nielsen, J. (2015) · Molecular Systems Biology · doi:10.15252/msb.20156487 · Cited by 383 · see citing works

Evaluation of Amino Acid and Energy Utilization in Feedstuff for Swine and Poultry Diets

Kong, C., & Adeola, O. (2014) · Asian-Australasian Journal of Animal Sciences · doi:10.5713/ajas.2014.r.02 · Cited by 376 · see citing works

Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes

Wang, M., Ahrné, S., Jeppsson, B. W., & Molin, G. (2005) · FEMS Microbiology Ecology · doi:10.1016/j.femsec.2005.03.012 · Cited by 373 · see citing works

Glutamine, arginine, and leucine signaling in the intestine

Rhoads, J. M., & Wu, G. (2009) · Amino Acids · doi:10.1007/s00726-008-0225-4 · Cited by 362 · see citing works

Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism

Hayashi, H., Takahashi, R., Nishi, T., Sakamoto, M., & Benno, Y. (2005) · Journal of Medical Microbiology · doi:10.1099/jmm.0.45935-0 · Cited by 360 · see citing works

Insights into digestion and absorption of major nutrients in humans

Goodman, B. E. (2010) · AJP Advances in Physiology Education · doi:10.1152/advan.00094.2009 · Cited by 356 · see citing works

Stool microflora in extremely low birthweight infants

Gewolb, I. H., Schwalbe, R. S., Taciak, V. L., Harrison, T. S., & Panigrahi, P. (1999) · Archives of Disease in Childhood Fetal & Neonatal · doi:10.1136/fn.80.3.f167 · Cited by 355 · see citing works

Post‐natal development of the porcine microbiota composition and activities

Konstantinov, S. R., Awati, A., Williams, B. A., Miller, B. G., Jones, P., Stokes, C., Akkermans, A. D. L., Smidt, H., & de Vos, W. M. (2006) · Environmental Microbiology · doi:10.1111/j.1462-2920.2006.01009.x · Cited by 350 · see citing works

A review of the relationship between the gut microbiota and amino acid metabolism

Lin, R., Liu, W., Piao, M., & Hong, Z. (2017) · Amino Acids · doi:10.1007/s00726-017-2493-3 · Cited by 348 · see citing works

Advances in protein–amino acid nutrition of poultry

Baker, D. H. (2008) · Amino Acids · doi:10.1007/s00726-008-0198-3 · Cited by 343 · see citing works

Digestibility of amino acids in swine: Results and their practical applications. A review

Sauer, W. C., & Ozimek, L. (1986) · Livestock Production Science · doi:10.1016/0301-6226(86)90076-x · Cited by 325 · see citing works

Apparent ileal digestibility of amino acids in dietary ingredients for broiler chickens

Ravindran, V., Hew, L. I., Ravindran, G., & Bryden, W. L. (2005) · Animal Science · doi:10.1079/asc42240085 · Cited by 309 · see citing works

Important roles for the arginine family of amino acids in swine nutrition and production

Wu, G., Bazer, F. W., Davis, T. A., Jaeger, L. A., Johnson, G. A., Kim, S. W., Knabe, D. A., Meininger, C. J., Spencer, T. E., & Yin, Y. (2007) · Livestock Science · doi:10.1016/j.livsci.2007.07.003 · Cited by 302 · see citing works

The SCFA Receptor GPR43 and Energy Metabolism

Kimura, I., Inoue, D., Hirano, K., & Tsujimoto, G. (2014) · Frontiers in Endocrinology · doi:10.3389/fendo.2014.00085 · Cited by 297 · see citing works

Short chain fatty acids and colonic health

Hijová, E., & Chmelařová, A. (2007) · Bratislavské lekárske listy/Bratislava medical journal · doi:10.1007/bf03656953 · Cited by 295 · see citing works

Amino acids and gut function

Wang, W. W., Qiao, S. Y., & Li, D. F. (2008) · Amino Acids · doi:10.1007/s00726-008-0152-4 · Cited by 292 · see citing works

Dietary Amino Acids and the Gut‐Microbiome‐Immune Axis: Physiological Metabolism and Therapeutic Prospects

Ma, N., & Ma, X. (2018) · Comprehensive Reviews in Food Science and Food Safety · doi:10.1111/1541-4337.12401 · Cited by 278 · see citing works

Enumeration of amino acid fermenting bacteria in the human large intestine: effects of pH and starch on peptide metabolism and dissimilation of amino acids

Smith, E. A., & Macfarlane, G. T. (1998) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.1998.tb00487.x · Cited by 277 · see citing works

Impact of dietary protein on microbiota composition and activity in the gastrointestinal tract of piglets in relation to gut health: a review

Rist, V. T. S., Weiss, E., Eklund, M., & Mosenthin, R. (2013) · Animal · doi:10.1017/s1751731113000062 · Cited by 269 · see citing works

Comparative effects of very low-carbohydrate, high-fat and high-carbohydrate, low-fat weight-loss diets on bowel habit and faecal short-chain fatty acids and bacterial populations

Brinkworth, G. D., Noakes, M., Clifton, P. M., & Bird, A. R. (2009) · British Journal Of Nutrition · doi:10.1017/s0007114508094658 · Cited by 269 · see citing works

Studies in the metabolism of the strict anaerobes (genus Clostridium)

Stickland, L. H. (1934) · Biochemical Journal · doi:10.1042/bj0281746 · Cited by 267 · see citing works

Colonic microflora: Nutrition and health

Cummings, J. H., & Macfarlane, G. T. (1997) · Nutrition · doi:10.1016/s0899-9007(97)00114-7 · Cited by 261 · see citing works

Cysteine dioxygenase: a robust system for regulation of cellular cysteine levels

Stipanuk, M. H., Ueki, I., Dominy, J. E., Simmons, C. R., & Hirschberger, L. L. (2008) · Amino Acids · doi:10.1007/s00726-008-0202-y · Cited by 253 · see citing works

The metabolism of proline, a stress substrate, modulates carcinogenic pathways

Phang, J. M., Donald, S. P., Pandhare, J., & Liu, Y. (2008) · Amino Acids · doi:10.1007/s00726-008-0063-4 · Cited by 252 · see citing works

Prediction and quantification of bioactive microbiota metabolites in the mouse gut

Sridharan, G. V., Choi, K., Klemashevich, C. L., Wu, C., Prabakaran, D., Pan, L. B., Steinmeyer, S. H., Mueller, C., Yousofshahi, M., Alaniz, R. C., et al. (2014) · Nature Communications · doi:10.1038/ncomms6492 · Cited by 247 · see citing works

Utilization of amino acids by bacteria from the pig small intestine

Dai, Z.-L., Zhang, J., Wu, G., & Zhu, W.-Y. (2010) · Amino Acids · doi:10.1007/s00726-010-0556-9 · Cited by 246 · see citing works

Identification ofLactobacillus plantarumGenes That Are Induced in the Gastrointestinal Tract of Mice

Bron, P. A., Grangette, C., Mercenier, A., de Vos, W. M., & Kleerebezem, M. (2004) · Journal of Bacteriology · doi:10.1128/jb.186.17.5721-5729.2004 · Cited by 239 · see citing works

Contribution of the microflora to proteolysis in the human large intestine

Macfarlane, G. T., Allison, C., Gibson, S. A. W., & Cummings, J. H. (1988) · Journal of Applied Bacteriology · doi:10.1111/j.1365-2672.1988.tb02427.x · Cited by 237 · see citing works

Molecular characterization of the microbial species that colonize human ileal and colonic mucosa by using 16S rDNA sequence analysis

Wang, X., Heazlewood, S. P., Krause, D. O., & Florin, T. H. (2003) · Journal of Applied Microbiology · doi:10.1046/j.1365-2672.2003.02005.x · Cited by 235 · see citing works

Amino acid and energy digestibility in ten samples of distillers dried grain with solubles fed to growing pigs1,2

Stein, H. H., Gibson, M. L., Pedersen, C., & Boersma, M. (2006) · Journal of Animal Science · doi:10.2527/2006.844853x · Cited by 235 · see citing works

Prediction of the apparent ileal digestibility of protein and amino acids in feedstuffs and feed mixtures for pigs by in vitro analyses

Boisen, S., & ́ndez, J. A. F. (1995) · Animal Feed Science and Technology · doi:10.1016/0377-8401(94)00686-4 · Cited by 234 · see citing works

Re-print of “Intestinal luminal nitrogen metabolism: Role of the gut microbiota and consequences for the host”

Davila, A.-M., Blachier, F., Gotteland, M., Andriamihaja, M., Benetti, P.-H., Sanz, Y., & Tomé, D. (2013) · Pharmacological Research · doi:10.1016/j.phrs.2013.01.003 · Cited by 231 · see citing works

Two L-Asparaginases from Escherichia coli B. Their Separation, Purification, and Antitumor Activity*

Campbell, H. A., Mashburn, L. T., Boyse, E. A., & Old, L. J. (1967) · Biochemistry · doi:10.1021/bi00855a011 · Cited by 230 · see citing works

Amino acid metabolism in intestinal bacteria and its potential implications for mammalian reproduction

Dai, Z., Wu, Z., Hang, S., Zhu, W., & Wu, G. (2015) · Molecular Human Reproduction · doi:10.1093/molehr/gav003 · Cited by 228 · see citing works

NITROGEN CYCLING IN THE GUT

Fuller, M. F., & Reeds, P. J. (1998) · Annual Review of Nutrition · doi:10.1146/annurev.nutr.18.1.385 · Cited by 225 · see citing works

Ideal amino acid pattern for 10-kilogram pigs

Chung, T. K., & Baker, D. H. (1992) · Journal of Animal Science · doi:10.2527/1992.70103102x · Cited by 215 · see citing works

Immunoreactivity and Amino Acid Content of Fermented Soybean Products

Frı́as, J., Song, Y. S., Martínez‐Villaluenga, C., de Mejı́a, E. G., & Vidal-Valverde, C. (2007) · Journal of Agricultural and Food Chemistry · doi:10.1021/jf072177j · Cited by 205 · see citing works

Diet, the Gut Microbiome, and Epigenetics

Hullar, M. A. J., & Fu, B. C. (2014) · The Cancer Journal · doi:10.1097/ppo.0000000000000053 · Cited by 205 · see citing works

Bacterial Populations Contaminating The Upper Gut in Patients With Small Intestinal Bacterial Overgrowth Syndrome

Bouhnik, Y., Alain, S., Attar, A., Flourié, B., Raskine, L., Sanson-Le Pors, M. J., & Rambaud, J.-C. (1999) · American Journal of Gastroenterology · doi:10.1111/j.1572-0241.1999.01016.x · Cited by 199 · see citing works

Ileal digestibility of amino acids in conventional, fermented, and enzyme-treated soybean meal and in soy protein isolate, fish meal, and casein fed to weanling pigs1

Cervantes‐Pahm, S. K., & Stein, H. H. (2010) · Journal of Animal Science · doi:10.2527/jas.2009-2677 · Cited by 191 · see citing works

Intestinal nitrogen recycling and utilization in health and disease

Bergen, W. G., & Wu, G. (2009) · The Journal of Nutrition · doi:10.3945/jn.109.104497 · Cited by 183 · see citing works

Expression of the calcium-sensing receptor on human antral gastrin cells in culture.

Ray, J. M., Squires, P. E., Curtis, S. B., Meloche, M. R., & Buchan, A. M. J. (1997) · Journal of Clinical Investigation · doi:10.1172/jci119413 · Cited by 174 · see citing works

Microbial Communities in the Human Small Intestine: Coupling Diversity to Metagenomics

Booijink, C. C., Zoetendal, E. G., Kleerebezem, M., & de Vos, W. M. (2007) · Future Microbiology · doi:10.2217/17460913.2.3.285 · Cited by 164 · see citing works

Amino acid‐dependent growth of Campylobacter jejuni: key roles for aspartase (AspA) under microaerobic and oxygen‐limited conditions and identification of AspB (Cj0762), essential for growth on glutamate

Guccione, E. J., Leon‐Kempis, M. D. R., Pearson, B. M., Hitchin, E., Mulholland, F., van Diemen, P. M., Stevens, M. P., & Kelly, D. J. (2008) · Molecular Microbiology · doi:10.1111/j.1365-2958.2008.06263.x · Cited by 162 · see citing works

Volatile acid production from threonine, valine, leucine and isoleucine by clostridia

Elsden, S. R., & Hilton, M. G. (1978) · Archives of Microbiology · doi:10.1007/bf00402304 · Cited by 161 · see citing works

Amino acid sensing in the gastrointestinal tract

Gabriel, A. S., & Uneyama, H. (2012) · Amino Acids · doi:10.1007/s00726-012-1371-2 · Cited by 160 · see citing works

Taurine increases mitochondrial buffering of calcium: role in neuroprotection

Idrissi, A. E. (2006) · Amino Acids · doi:10.1007/s00726-006-0396-9 · Cited by 160 · see citing works

Ruminal Microbial Metabolism of Peptides and Amino Acids

Wallace, R. J. (1996) · Journal of Nutrition · doi:10.1093/jn/126.suppl_4.1326s · Cited by 159 · see citing works

Availability and Utilization of Amino Acids for Growing Pigs

Batterham, E. S. (1992) · Nutrition Research Reviews · doi:10.1079/nrr19920004 · Cited by 152 · see citing works

Phylogeny of the Ammonia-Producing Ruminal Bacteria Peptostreptococcus anaerobius, Clostridium sticklandii, and Clostridium aminophilum sp. nov.

Paster, B. J., Russell, J. B., Yang, C., Chow, J., Woese, C. R., & Tanner, R. S. (1993) · International Journal of Systematic Bacteriology · doi:10.1099/00207713-43-1-107 · Cited by 145 · see citing works

Ammonia-Hyperproducing Bacteria from New Zealand Ruminants

Attwood, G. T., Klieve, A. V., Ouwerkerk, D., & Patel, B. K. C. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.5.1796-1804.1998 · Cited by 141 · see citing works

Amino acid requirements in humans: with a special emphasis on the metabolic availability of amino acids

Elango, R., Ball, R. O., & Pencharz, P. B. (2009) · Amino Acids · doi:10.1007/s00726-009-0234-y · Cited by 139 · see citing works

Calcium-sensing receptor is a physiologic multimodal chemosensor regulating gastric G-cell growth and gastrin secretion

Feng, J., Petersen, C. D., Coy, D. H., Jiang, J., Thomas, C. J., Pollak, M. R., & Wank, S. A. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1009078107 · Cited by 138 · see citing works

PCR ribotyping of Clostridium difficile isolates originating from human and animal sources

Arroyo, L. G., Kruth, S. A., Willey, B. M., Staempfli, H. R., Low, D. E., & Weese, J. S. (2005) · Journal of Medical Microbiology · doi:10.1099/jmm.0.45805-0 · Cited by 137 · see citing works

Colorectal carcinogenesis in germ-free and conventionally reared rats: Different intestinal environments affect the systemic immunity

Vannucci, L. E., Štëpánková, R., Kozáková, H., Fišerová, A., Rossmann, P., & Tlaskalová-Hogenová, H. (2008) · International Journal of Oncology · doi:10.3892/ijo.32.3.609 · Cited by 128 · see citing works

Evaluation of Soybean Meal, Corn Gluten Meal, Blood Meal and Fish Meal as Sources of Nitrogen and Amino Acids Disappearing from the Small Intestine of Steers

Titgemeyer, E. C., Merchen, N. R., & Berger, L. L. (1989) · Journal of Animal Science · doi:10.2527/jas1989.671262x · Cited by 128 · see citing works

The Functions and Roles of the Extracellular Ca2+–Sensing Receptor along the Gastrointestinal Tract

Geibel, J. P., & Hébert, S. (2009) · Annual Review of Physiology · doi:10.1146/annurev.physiol.010908.163128 · Cited by 125 · see citing works

Characterization of the cecal bacteria of normal pigs

Robinson, I. M., Allison, M. J., & Bucklin, J. A. (1981) · Applied and Environmental Microbiology · doi:10.1128/aem.41.4.950-955.1981 · Cited by 124 · see citing works

The Lysine Decarboxylase CadA Protects Escherichia coli Starved of Phosphate against Fermentation Acids

Moreau, P. L. (2007) · Journal of Bacteriology · doi:10.1128/jb.01306-06 · Cited by 119 · see citing works

Impact of the microbial derived short chain fatty acid propionate on host susceptibility to bacterial and fungal infections in vivo

Ciarlo, E., Heinonen, T., Herderschee, J., Fenwick, C. W., Mombelli, M., Roy, D. L., & Roger, T. (2016) · Scientific Reports · doi:10.1038/srep37944 · Cited by 119 · see citing works

Short-Chain Fatty Acids Differentially Affect Intracellular Lipolysis in a Human White Adipocyte Model

Jocken, J. W. E., Hernández, M. A. G., Hoebers, N., van der Beek, C. M., Essers, Y. P. G., Blaak, E. E., & Canfora, E. E. (2018) · Frontiers in Endocrinology · doi:10.3389/fendo.2017.00372 · Cited by 117 · see citing works

Human prolidase and prolidase deficiency: an overview on the characterization of the enzyme involved in proline recycling and on the effects of its mutations

Lupi, A., Tenni, R., Rossi, A., Cetta, G., & Forlino, A. (2008) · Amino Acids · doi:10.1007/s00726-008-0055-4 · Cited by 116 · see citing works

Effect of Individual L-Amino Acids on Gastric Acid Secretion and Serum Gastrin and Pancreatic Polypeptide Release in Humans

Taylors, I. L., Byrne, W. J., Christie, D. L., Ament, M. E., & Walsh, J. H. (1982) · Gastroenterology · doi:10.1016/0016-5085(82)90187-1 · Cited by 115 · see citing works

mGluR1 in the fundic glands of rat stomach

Gabriel, A. M. S., Maekawa, T., Uneyama, H., Yoshie, S., & Torii, K. (2007) · FEBS Letters · doi:10.1016/j.febslet.2007.02.016 · Cited by 115 · see citing works

Introduction to metabolic activities of intestinal bacteria

Cj, S., & Bryant, M. (1979) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/32.1.149 · Cited by 114 · see citing works

Acidaminococcus gen. n., Acidaminococcus fermentans sp. n., Anaerobic Gram-negative Diplococci Using Amino Acids as the Sole Energy Source for Growth

Rogosa, M. (1969) · Journal of Bacteriology · doi:10.1128/jb.98.2.756-766.1969 · Cited by 113 · see citing works

l -Type amino acids stimulate gastric acid secretion by activation of the calcium-sensing receptor in parietal cells

Busque, S. M., Kerstetter, J. E., Geibel, J. P., & Insogna, K. L. (2005) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00096.2005 · Cited by 109 · see citing works

Sodium Ion Pumps and Hydrogen Production in Glutamate Fermenting Anaerobic Bacteria

Boiangiu, C. D., Jayamani, E., Brügel, D., Herrmann, G., Kim, J., Forzi, L., Hedderich, R., Vgenopoulou, I., Pierik, A. J., Steuber, J., et al. (2005) · Microbial Physiology · doi:10.1159/000091558 · Cited by 107 · see citing works

A nutritive view on the host–pathogen interplay

Schaible, U. E., & Kaufmann, S. H. E. (2005) · Trends in Microbiology · doi:10.1016/j.tim.2005.06.009 · Cited by 106 · see citing works

Specificity of amino acid regulated gene expression: analysis of genes subjected to either complete or single amino acid deprivation

Palii, S. S., Kays, C. E., Deval, C., Bruhat, A., Fafournoux, P., & Kilberg, M. S. (2008) · Amino Acids · doi:10.1007/s00726-008-0199-2 · Cited by 101 · see citing works

Availability of intestinal microbial lysine for whole body lysine homeostasis in human subjects

Metges, C. C., El-Khoury, A. E., Henneman, L., Petzke, K. J., Grant, I., Bedri, S., Pereira, P. P., Ajami, A. M., Fuller, M. F., & Young, V. R. (1999) · American Journal of Physiology-Endocrinology and Metabolism · doi:10.1152/ajpendo.1999.277.4.e597 · Cited by 100 · see citing works

Diversity of Clostridium difficile in pigs and other animals in Slovenia

Avberšek, J., Janežič, S., Pate, M., Rupnik, M., Zidarič, V., Logar, K., Vengušt, M., Zemljič, M., Pirš, T., & Ocepek, M. (2009) · Anaerobe · doi:10.1016/j.anaerobe.2009.07.004 · Cited by 97 · see citing works

Differential regulation of protein synthesis by amino acids and insulin in peripheral and visceral tissues of neonatal pigs

Suryawan, A., O’Connor, P. M. J., Bush, J. A., Nguyen, H. V., & Davis, T. A. (2008) · Amino Acids · doi:10.1007/s00726-008-0149-z · Cited by 94 · see citing works

Fermentation of peptides and amino acids by a monensin-sensitive ruminal Peptostreptococcus

Chen, G. J., & Russell, J. B. (1988) · Applied and Environmental Microbiology · doi:10.1128/aem.54.11.2742-2749.1988 · Cited by 91 · see citing works

Influence of pH, nutrient availability, and growth rate on amine production by Bacteroides fragilis and Clostridium perfringens

Allison, C., & Macfarlane, G. T. (1989) · Applied and Environmental Microbiology · doi:10.1128/aem.55.11.2894-2898.1989 · Cited by 87 · see citing works

High diversity of Clostridium difficile genotypes isolated from a single poultry farm producing replacement laying hens

Zidarič, V., Zemljič, M., Janežič, S., Kocuvan, A., & Rupnik, M. (2008) · Anaerobe · doi:10.1016/j.anaerobe.2008.10.001 · Cited by 87 · see citing works

Acid‐neutralizing activity during amino acid fermentation by Porphyromonas gingivalis, Prevotella intermedia and Fusobacterium nucleatum

Takahashi, N. (2003) · Oral Microbiology and Immunology · doi:10.1034/j.1399-302x.2003.00054.x · Cited by 86 · see citing works

Composition of intestinal Enterobacteriaceae populations of healthy domestic pigs

Schierack, P., Walk, N., Reiter, K., Weyrauch, K. D., & Wieler, L. H. (2007) · Microbiology · doi:10.1099/mic.0.2007/010173-0 · Cited by 84 · see citing works

Development of the Indicator Amino Acid Oxidation Technique to Determine the Availability of Amino Acids from Dietary Protein in Pigs

Moehn, S., Bertolo, R. F. P., Pencharz, P. B., & Ball, R. O. (2005) · Journal of Nutrition · doi:10.1093/jn/135.12.2866 · Cited by 82 · see citing works

Glucocorticoid regulation of amino acid and polyamine metabolism in the small intestine

Flynn, N. E., Bird, J. G., & Guthrie, A. S. (2008) · Amino Acids · doi:10.1007/s00726-008-0206-7 · Cited by 81 · see citing works

Dietary and Endogenous Amino Acids Are the Main Contributors to Microbial Protein in the Upper Gut of Normally Nourished Pigs

Libao‐Mercado, A. J., Zhu, C., Cant, J. P., Lapierre, H., Thibault, J.-N., Sève, B., Fuller, M. F., & de Lange, C. F. M. (2009) · Journal of Nutrition · doi:10.3945/jn.108.103267 · Cited by 79 · see citing works

Amino acid fermentation by Fusobacterium nucleatum

Loesche, W. J., & Gibbons, R. J. (1968) · Archives of Oral Biology · doi:10.1016/0003-9969(68)90051-4 · Cited by 78 · see citing works

Gram-Negative Anaerobic Bacilli: Their Role in Infection and Patterns of Susceptibility to Antimicrobial Agents. II. Little-Known Fusobacterium Species and Miscellaneous Genera

George, W. L., Kirby, B. D., Sutter, V. L., Citron, D. M., & Finegold, S. M. (1981) · Clinical Infectious Diseases · doi:10.1093/clinids/3.3.599 · Cited by 73 · see citing works

A comparative in vitro investigation into the effects of cooked meats on the human faecal microbiota

Shen, Q., Chen, Y. A., & Tuohy, K. M. (2010) · Anaerobe · doi:10.1016/j.anaerobe.2010.09.007 · Cited by 72 · see citing works

Intracerebroventricular injection of l-arginine induces sedative and hypnotic effects under an acute stress in neonatal chicks

Suenaga, R., Tomonaga, S., Yamane, H., Kurauchi, I., Tsuneyoshi, Y., Sato, H., Denbow, D. M., & Furuse, M. (2007) · Amino Acids · doi:10.1007/s00726-007-0610-4 · Cited by 71 · see citing works

Isolation and Identification of Hyper-Ammonia Producing Bacteria from Swine Manure Storage Pits

Whitehead, T. R., & Cotta, M. A. (2004) · Current Microbiology · doi:10.1007/s00284-003-4084-7 · Cited by 70 · see citing works

Proteomic investigation of amino acid catabolism in the indigenous gut anaerobe Fusobacterium varium

Potrykus, J., White, R. L., & Bearne, S. L. (2008) · PROTEOMICS · doi:10.1002/pmic.200700437 · Cited by 68 · see citing works

Leucine dissimilation to isovaleric and isocaproic acids by cell suspensions of amino acid fermenting anaerobes: the Stickland reaction revisited

Britz, M. L., & Wilkinson, R. G. (1982) · Canadian Journal of Microbiology · doi:10.1139/m82-043 · Cited by 65 · see citing works

Studies on Amine Production in the Human Colon: Enumeration of Amine forming Bacteria and Physiological Effects of Carbohydrate and pH

Smith, E. A., & Macfarlane, G. T. (1996) · Anaerobe · doi:10.1006/anae.1996.0037 · Cited by 63 · see citing works

Production of indolic compounds by rumen bacteria isolated from grazing ruminants

Attwood, G. T., Li, D., Pacheco, D., & Tavendale, M. H. (2006) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2006.02896.x · Cited by 62 · see citing works

The digestive release of amino acids and their concentrations in the portal plasma of rats after protein feeding

GOLDBERG, A., & Guggenheim, K. Y. (1962) · Biochemical Journal · doi:10.1042/bj0830129 · Cited by 59 · see citing works

Receptors Responsive to Protein Breakdown Products in G-Cells and D-Cells of Mouse, Swine and Human

Haid, D., Jordan-Biegger, C., Widmayer, P., & Breer, H. (2012) · Frontiers in Physiology · doi:10.3389/fphys.2012.00065 · Cited by 58 · see citing works

Leucine 2,3-aminomutase, an enzyme of leucine catabolism.

Poston, J. M. (1976) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)33627-x · Cited by 57 · see citing works

What’s bugging your teen?—The microbiota and adolescent mental health

McVey Neufeld, K.-A., Luczynski, P., Seira Oriach, C., Dinan, T. G., & Cryan, J. F. (2016) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2016.06.005 · Cited by 56 · see citing works

Nutrient sensing receptors in gastric endocrine cells

Haid, D., Widmayer, P., & Breer, H. (2011) · Journal of Molecular Histology · doi:10.1007/s10735-011-9339-1 · Cited by 55 · see citing works

Efficacy of DL-methionine hydroxy analog free acid and DL-methionine as methionine sources for pigs1,2

Kim, B. G., Lindemann, M. D., Rademacher, M., Brennan, J. J., & Cromwell, G. L. (2006) · Journal of Animal Science · doi:10.2527/2006.841104x · Cited by 54 · see citing works

The in vitro uptake and metabolism of peptides and amino acids by five species of rumen bacteria

Ling, J. R., & Armstead, I. (1995) · Journal of Applied Bacteriology · doi:10.1111/j.1365-2672.1995.tb02831.x · Cited by 54 · see citing works

Association of enterotoxigenic Bacteroides fragilis with diarrheal disease in young pigs

Myers, L. L., & Shoop, D. S. (1987) · American Journal of Veterinary Research · doi:10.2460/ajvr.1987.48.05.774 · Cited by 54 · see citing works

Nutritional and Physiological Functions of Amino Acids in Pigs

Blachier, F., Wu, G., & Yin, Y. (2013) · Springer eBooks · doi:10.1007/978-3-7091-1328-8 · Cited by 54 · see citing works

Transport of glutamine by Streptococcus bovis and conversion of glutamine to pyroglutamic acid and ammonia

Chen, G. J., & Russell, J. B. (1989) · Journal of Bacteriology · doi:10.1128/jb.171.6.2981-2985.1989 · Cited by 53 · see citing works

G enomics of O ral B acteria

Duncan, M. J. (2003) · Critical Reviews in Oral Biology & Medicine · doi:10.1177/154411130301400303 · Cited by 45 · see citing works

The Comparative Specificity of Acid Proteinases

Voynick, I. M., & Fruton, J. S. (1971) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.68.2.257 · Cited by 44 · see citing works

Catabolism of Amino Acids by Megasphaera elsdenii LC1

Wallace, R. J. (1986) · Applied and Environmental Microbiology · doi:10.1128/aem.51.5.1141-1143.1986 · Cited by 43 · see citing works

An amino acid transporter involved in gastric acid secretion

Kirchhoff, P., Dave, M. H., Remy, C., Kosiek, O., Busque, S. M., Dufner, M. M., Geibel, J. P., Verrey, F., & Wagner, C. A. (2005) · Pflügers Archiv - European Journal of Physiology · doi:10.1007/s00424-005-1507-2 · Cited by 38 · see citing works

Veillonella magna sp. nov., isolated from the jejunal mucosa of a healthy pig, and emended description of Veillonella ratti

Kraatz, M., & Taras, D. (2008) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.2008/001032-0 · Cited by 38 · see citing works

Stimulation of Gastrin Release in Dogs by Individual Amino Acids

Strunz, U. T., Walsh, J. H., & Grossman, M. I. (1978) · Experimental Biology and Medicine · doi:10.3181/00379727-157-40072 · Cited by 37 · see citing works

Nutrient transport by ruminal bacteria: a review

Martin, S. A. (1994) · Journal of Animal Science · doi:10.2527/1994.72113019x · Cited by 36 · see citing works

Digestion and Absorption of Dietary Protein in Man

Silk, D. B. A. (1980) · Proceedings of The Nutrition Society · doi:10.1079/pns19800009 · Cited by 35 · see citing works

Isolation of Acidaminococcus fermentans and Megasphaera elsdenii from Normal Human Feces

Sugihara, P. T., Sutter, V. L., Attebery, H. R., Bricknell, K. S., & Finegold, S. M. (1974) · Applied Microbiology · doi:10.1128/am.27.1.274-275.1974 · Cited by 33 · see citing works

Biochemical and genetic diversity of carbohydrate-fermenting and obligate amino acid-fermenting hyper-ammonia-producing bacteria from Nellore steers fed tropical forages and supplemented with casein

Bento, C. B. P., de Azevedo, A. C., Detmann, E., & Mantovani, H. C. (2015) · BMC Microbiology · doi:10.1186/s12866-015-0369-9 · Cited by 32 · see citing works

Proline biosynthesis from L-ornithine in Clostridium sticklandii: purification of Δ1-pyrroline-5-carboxylate reductase, and sequence and expression of the encoding gene, proC

Kenklies, J., Ziehn, R., Fritsche, K., Pich, A., & Andreesen, J. R. (1999) · Microbiology · doi:10.1099/13500872-145-4-819 · Cited by 29 · see citing works

The adaptation and resistance ofClostridium aminophilumF to the butyrivibriocin-like substance ofButyrivibrio fibrisolvensJL5 and monensin

Rychlik, J. L., & Russell, J. B. (2002) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2002.tb11115.x · Cited by 27 · see citing works

Energetics of arginine and lysine transport by whole cells and membrane vesicles of strain SR, a monensin-sensitive ruminal bacterium

Kessel, J. S. V., & Russell, J. B. (1992) · Applied and Environmental Microbiology · doi:10.1128/aem.58.3.969-975.1992 · Cited by 26 · see citing works

Detection of Clostridium difficile toxins from the small intestine and cecum of rabbits with naturally acquired enterotoxemia.

Perkins, S. E., Fox, J. G., Taylor, N. S., Dl, G., & Lipman, N. S. (1995) · PubMed · Cited by 26 · see citing works

Purification and properties of Selenomonas ruminantium lysine decarboxylase

Kamio, Y., & Terawaki, Y. (1983) · Journal of Bacteriology · doi:10.1128/jb.153.2.658-664.1983 · Cited by 24 · see citing works

Regulation of polyamine biosynthesis in Escherichia coli by basic proteins.

Heller, J. S., Rostomily, R., Kyriakidis, D. A., & Canellakis, E. S. (1983) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.80.17.5181 · Cited by 23 · see citing works

Occurrence of Agmatine Pathway for Putrescine Synthesis inSelenomonas ruminatium

Liao, S., Phuntip, P., Ko, K.-C., TAKATUSKA, Y., Yamaguchi, Y., Abe, N., Kaneko, J., & Kamio, Y. (2008) · Bioscience Biotechnology and Biochemistry · doi:10.1271/bbb.70550 · Cited by 19 · see citing works

Analysis of diversity and function of the human small intestinal microbiota

Booijink, C. C. (2009) · doi:10.18174/4065 · Cited by 17 · see citing works

Excitatory amino acids in epilepsy: from the clinics to the laboratory

Novelli, A., & Tasker, R. A. (2007) · Amino Acids · doi:10.1007/s00726-006-0413-z · Cited by 13 · see citing works

Chemically defined media for growing anaerobic bacteria of the genus Veillonella

Lopes, J. N., & Cruz, F. S. (1976) · Antonie van Leeuwenhoek · doi:10.1007/bf00410172 · Cited by 9 · see citing works

[Megasphaera elsdenii--a normal inhabitant of human large intestine].

Werner, H. (1973) · PubMed · Cited by 7 · see citing works

Decreased competiveness of the foodborne pathogen Campylobacter jejuni during Co-culture with the hyper-ammonia producing anaerobe Clostridium aminophilum

Anderson, R. C., Flythe, M. D. D., Krueger, N. A., Callaway, T. R., Edrington, T. S., Harvey, R. B., & Nisbet, D. J. (2010) · Folia Microbiologica · doi:10.1007/s12223-010-0046-1 · Cited by 5 · see citing works

Oxidative Stress: The Role of Antioxidant Phytochemicals in the Prevention and Treatment of Diseases

Muscolo, A., Oliva, M., Giulio, T., & Russo, M. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25063264 · Cited by 502 · see citing works

Diet and the Microbiota–Gut–Brain Axis: Sowing the Seeds of Good Mental Health

Berding, K., Vlckova, K., Marx, W., Schellekens, H., Stanton, C., Clarke, G., Jacka, F., Dinan, T. G., & Cryan, J. F. (2021) · Advances in Nutrition · doi:10.1093/advances/nmaa181 · Cited by 451 · see citing works

A look beyond dietary (poly)phenols: The low molecular weight phenolic metabolites and their concentrations in human circulation

Carregosa, D., Pinto, C., Ávila‐Gálvez, M. Á., Bastos, P., Berry, D., & dos Santos, C. N. (2022) · Comprehensive Reviews in Food Science and Food Safety · doi:10.1111/1541-4337.13006 · Cited by 59 · see citing works

Effects of tannic acid on the immunity and intestinal health of broiler chickens with necrotic enteritis infection

Xu, H., Fu, J., Luo, Y., Li, P., Song, B., Lv, Z., & Guo, Y. (2023) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-023-00867-8 · Cited by 46 · see citing works

Swine Gastrointestinal Microbiota and the Effects of Dietary Amino Acids on Its Composition and Metabolism

Liao, S. F., Ji, F., Fan, P. F., & Denryter, K. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25021237 · Cited by 46 · see citing works

Potentialities of Ganoderma lucidum extracts as functional ingredients in food formulation

Swallah, M. S., Bondzie‐Quaye, P., Wang, H., Shao, C., Hua, P., Bashir, M. A., Holman, J. B., Sossah, F. L., & Huang, Q. (2023) · Food Research International · doi:10.1016/j.foodres.2023.113161 · Cited by 38 · see citing works

Structural Characteristics of Insoluble Dietary Fiber from Okara with Different Particle Sizes and Their Prebiotic Effects in Rats Fed High-Fat Diet

Fan, H., Zhang, Y., Swallah, M. S., Wang, S., Zhang, J., Fang, J., Lu, J., & Yu, H. (2022) · Foods · doi:10.3390/foods11091298 · Cited by 29 · see citing works

Bifidobacterium lactis and Lactobacillus plantarum Enhance Immune Function and Antioxidant Capacity in Cats through Modulation of the Gut Microbiota

Wang, W., Dong, H., Chang, X., Chen, Q., Wang, L., Chen, S., Chen, L., Wang, R., Ge, S., Wang, P., et al. (2024) · Antioxidants · doi:10.3390/antiox13070764 · Cited by 28 · see citing works

Workshop report: Toward the development of a human whole stool reference material for metabolomic and metagenomic gut microbiome measurements

Mandal, R., Cano, R. J., Davis, C. D., Hayashi, D. K., Jackson, S. A., Jones, C. M., Lampe, J. W., Latulippe, M. E., Lin, N. J., Lippa, K. A., et al. (2020) · Metabolomics · doi:10.1007/s11306-020-01744-5 · Cited by 28 · see citing works

The regulation of glucose and lipid metabolism through the interaction of dietary polyphenols and polysaccharides via the gut microbiota pathway

Jia, Y., Liu, Y., Wu, Y., Feng, C., Zhang, H., Ren, F., & Liu, H. (2024) · Food & Function · doi:10.1039/d4fo00585f · Cited by 27 · see citing works

Role of dietary amino acids and microbial metabolites in the regulation of pig intestinal health

Ma, Y., Han, X., Fang, J. Q., & Jiang, H. (2021) · Animal nutrition · doi:10.1016/j.aninu.2021.10.004 · Cited by 24 · see citing works

AhR governs lipid metabolism: the role of gut microbiota

Zheng, W., Liu, M., Lv, X., He, C., Yin, J., & Ma, J. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1442282 · Cited by 21 · see citing works

Fermented Soy and Fish Protein Dietary Sources Shape Ileal and Colonic Microbiota, Improving Nutrient Digestibility and Host Health in a Piglet Model

Li, Y., Han, Y., Zhao, Q., Tang, C., Zhang, J., & Qin, Y. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.911500 · Cited by 21 · see citing works

Dietary l-arginine supplementation of tilapia (Oreochromis niloticus) alters the microbial population and activates intestinal fatty acid oxidation

Li, S., Wang, C., & Wu, Z. (2021) · Amino Acids · doi:10.1007/s00726-021-03018-3 · Cited by 19 · see citing works

A Systematic Review of Dietary Influences on Fecal Microbiota Composition and Function among Healthy Humans 1–20 Years of Age

Dinsmoor, A. M., Aguilar‐López, M., Khan, N. A., & Donovan, S. M. (2021) · Advances in Nutrition · doi:10.1093/advances/nmab047 · Cited by 17 · see citing works

Dietary supplementation with Neolamarckia cadamba leaf extract improves broiler meat quality by enhancing antioxidant capacity and regulating metabolites

Wang, C., Chen, D., Wu, S., Zhou, W. J., Chen, X., Zhang, Q., & Wang, L. (2024) · Animal nutrition · doi:10.1016/j.aninu.2024.01.011 · Cited by 16 · see citing works

Dietary Nitrogen and Its Role in the Gut Microbiome and Inflammatory Bowel Disease: A Narrative Review

Herrera, M., & Byerley, L. O. (2025) · Nutrients · doi:10.3390/nu17142373 · Cited by 15 · see citing works

Gut-Microbiota-Derived Butyric Acid Overload Contributes to Ileal Mucosal Barrier Damage in Late Phase of Chronic Unpredictable Mild Stress Mice

Wang, C., Qiu, M., Wang, S., Luo, J., Huang, L., Deng, Q., Fang, Z., Sun, L., & Gooneratne, R. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms252312998 · Cited by 14 · see citing works

Phloretin supplementation ameliorates intestinal injury of broilers with necrotic enteritis by alleviating inflammation, enhancing antioxidant capacity, regulating intestinal microbiota, and producing plant secondary metabolites

Wu, M., Peng, M., Zang, J., Han, S., Li, P., Guo, S., Maiorano, G., Hu, Q., Hou, Y., & Yi, D. (2025) · Poultry Science · doi:10.1016/j.psj.2025.105187 · Cited by 14 · see citing works

Effects of Low Protein Diet on Production Performance and Intestinal Microbial Composition in Pigs

Wang, D., Chen, G., Li, W., Chai, M., Zhang, H., & Su, Y. (2023) · Veterinary Sciences · doi:10.3390/vetsci10110655 · Cited by 13 · see citing works

Genome-centric investigation of the potential succession pattern in gut microbiota and altered functions under high-protein diet

Zhao, Y., Chen, L., Yao, S., Chen, L., Huang, J., Chen, S., & Yu, Z. (2023) · Current Research in Food Science · doi:10.1016/j.crfs.2023.100600 · Cited by 11 · see citing works

Fermentation of a wine pomace and microalgae blend to synergistically enhance the functional value of protein- and polyphenol-rich matrices

Trossolo, E., Tlais, A. Z. A., Tonini, S., Filannino, P., Gobbetti, M., & Cagno, R. D. (2025) · Food Research International · doi:10.1016/j.foodres.2025.115785 · Cited by 11 · see citing works

Estimation of Protein and Amino Acid Requirements in Layer Chicks Depending on Dynamic Model

Liu, M., Xia, Z.-Y., Li, H.-L., Huang, Y., Refaie, A., Deng, Z., & Sun, L. (2024) · Animals · doi:10.3390/ani14050764 · Cited by 11 · see citing works

Spectroscopic analysis of wild medicinal desert plants from wadi sanor (beni-suef), Egypt, and their antimicrobial and antioxidant activities

El-zairy, A., Mohamed, H. S., Ahmed, S. A., Ahmed, S. A., Okla, M. K., El‐Adl, K., AbdElgawad, H., & Hozzein, W. N. (2024) · Heliyon · doi:10.1016/j.heliyon.2024.e39612 · Cited by 9 · see citing works

Dietary Protein Intake and Associated Risks for Atopic Dermatitis, Intrinsic Eczema, and Allergic Sensitization among Young Chinese Adults in Singapore/Malaysia: Key Findings from a Cross-sectional Study

Lim, J. J., Reginald, K., Say, Y., Liu, M. H., & Chew, F. T. (2023) · JID Innovations · doi:10.1016/j.xjidi.2023.100224 · Cited by 9 · see citing works

Nutritional effects on mucosal integrity and immune function

Cundra, L. B., Vallabhaneni, M., Houston, K., Saadeh, M., Vargas, A., D’Souza, S. M., & Johnson, D. A. (2024) · Exploration of Immunology · doi:10.37349/ei.2024.00130 · Cited by 9 · see citing works

Contributions of Dietary Patterns and Factors to Regulation of Rheumatoid Disease

Zhang, J., Wang, X., Fang, J., Li, Y., Yu, Y., Wang, J., & Sun, B. (2025) · International Journal of Molecular Sciences · doi:10.3390/ijms26062674 · Cited by 8 · see citing works

Gut microbiota: origin or panacea for all ills? Immune and metabolic diseases, nutrition, and microbiota-based interventions

Colica, C., & Vecchio, I. (2025) · Microbial Pathogenesis · doi:10.1016/j.micpath.2025.108213 · Cited by 7 · see citing works

The fate of dietary protein in the gastrointestinal tract and implications for colonic disease

Davis, R. W., Bryant, R. V., Gibson, P. R., & Day, A. S. (2026) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-026-01173-0 · Cited by 6 · see citing works

Recent advances in the interaction between gut microbiota/metabolites and host lipid metabolism

Gong, S., Ma, J., Li, F., Li, T., Liu, G., Tan, B., Huang, X., Yin, J., & Yin, Y. (2021) · Scientia Sinica Vitae · doi:10.1360/ssv-2020-0396 · Cited by 6 · see citing works

Healthy food design based on gut microbiota metabolic flux

Yan, F., Xiang, S., Ying, J., Chen, J., Shi, L., Zhang, Y., Han, J., & Zhu, X. (2024) · Trends in Food Science & Technology · doi:10.1016/j.tifs.2024.104790 · Cited by 5 · see citing works

Interactions and mechanisms of key polyphenols from Rosa roxburghii tratt distiller's grains with fecal microbiota: Implications for host health

Zhou, D., Cheng, Y., & Huang, Y. (2024) · Food Bioscience · doi:10.1016/j.fbio.2024.105704 · Cited by 5 · see citing works

Microbiota and Metabolite Profiles in the Feces of Juvenile Sika Deer (Cervus nippon) from Birth to Weaning

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Zhang, R.-B., Dong, L., Huang, Q., Shen, Y., Li, H., Yu, S., & Wu, Q. (2023) · Experimental Biology and Medicine · doi:10.1177/15353702231182205 · Cited by 3 · see citing works

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Шкромада, О., Fotina, T., BEREZOVSKYI, A., Dudchenko, Y., & Фотін, О. В. (2022) · Scientific Horizons · doi:10.48077/scihor.25(6).2022.9-20 · Cited by 1 · see citing works

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Ma, X. (2020) · Current Protein and Peptide Science · doi:10.2174/138920372108200923163047

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Silva, R. L. D. O. (2021) · doi:10.47328/ufvbbt.2021.230

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Puastuti, W., Tresia, G. E., Herliatika, A., Haryati, T., Yulistiani, D., Maplani, Widaringsih, W., & Miraya, N. (2024) · IOP Conference Series Earth and Environmental Science · doi:10.1088/1755-1315/1341/1/012045

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Shvydkov, A. N., Игоревна, С. О., Калмыкова, А. И., Gulyaeva, Y. A., Tkachev, A. V., Kozhevnikova, P. E., Alexandrova, D. A., & Domnysheva, V. V. (2024) · Vestnik of the Russian agricultural science · doi:10.31857/s2500208224060194

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Olaniran, A. F., Obayomi, O. V., & Olagunju, O. F. (2025) · De Gruyter eBooks · doi:10.1515/9783111441238-009

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Katsimichas, T., Xintarakou, A., Vlachopoulos, C. V., Tsioufis, C. P., & Lazaros, G. A. (2025) · Nutrients · doi:10.3390/nu17193071

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Aheto, F., Granehäll, L., Nikoloudaki, O., Ben, M., Plattner, S., Gobbetti, M., Cagno, R. D., & Polo, A. (2026) · Food Bioscience · doi:10.1016/j.fbio.2026.108442

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Shafi, Z., Waheed, A., Shahid, M., Rasool, A., & Ali, S. (2026) · Food Research International · doi:10.1016/j.foodres.2026.119983

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Jan, R., Zang, Y., Iftikhar, M., Zafar, M., Zhong, X., Zhang, X., & Wang, M. (2026) · Journal of Animal and Feed Sciences · doi:10.22358/jafs/225576/2026

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Ghadimi, D., Blömer, S., KAYA, A. Ş., Krüger, S., Röcken, C., Schäfer, H., de Heer, G., Jarczak, D., Uchiyama, J., Matsuzaki, S., et al. (2026) · Mechanisms of Ageing and Development · doi:10.1016/j.mad.2026.112260

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Frolova, A. S., Vesnina, A. D., Fedorova, A., Остапова, Е. В., Петрович, Ю. В., & Milentyeva, I. (2026) · Foods and raw materials · doi:10.21603/2308-4057-2027-2-724

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Zhang, Q.-Y., Li, K., Wu, M.-Y., Gao, H.-Y., Ding, X.-Y., Han, R., & Xiao, W.-H. (2026) · Ageing Research Reviews · doi:10.1016/j.arr.2026.103413

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Ma, N., & Ma, X. (2018) · Comprehensive Reviews in Food Science and Food Safety · doi:10.1111/1541-4337.12401 · Cited by 278 · see citing works

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Dai, Z. (2010) · Frontiers in bioscience · doi:10.2741/3820 · Cited by 563 · see citing works

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Wu, L., Tang, Z., Chen, H., Ren, Z., Ding, Q., Liang, K., & Sun, Z. (2020) · Animal nutrition · doi:10.1016/j.aninu.2020.11.003 · Cited by 117 · see citing works

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Wenwei, L., Zhangming(裴彰明), P., & Wei(陈卫), C. (2026) · DOAJ (DOAJ: Directory of Open Access Journals) · doi:10.12301/spxb202500421

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Davila, A.-M., Blachier, F., Gotteland, M., Andriamihaja, M., Benetti, P.-H., Sanz, Y., & Tomé, D. (2013) · Pharmacological Research · doi:10.1016/j.phrs.2012.11.005 · Cited by 548 · see citing works