Nationwide Survey about the Occurrence of Aspergillosis in Captive Penguins in Zoos and Aquariums in Japan
Open accessAbstract
We surveyed the facilities that were members of the Japan Association of Zoos and Aquariums to clarify the incidence of aspergillosis, which is a major cause of death in captive penguins, and to discern effective preventive measures. Responses were obtained for 2910 penguins in 64 facilities; 73 penguins (2.5%) in 35 facilities had died from aspergillosis during the past 5 years from April 2016 to March 2021. Answers to questions about the rearing environment indicated that aspergillosis occurred significantly more often in facilities where penguins were reared outdoors, were in contact with soil, or were moved outside of the rearing enclosure. Answers to questions about their dead penguins indicated that 76% may have been at individual risk (e.g., young age, old age, molting period, and breeding season) and 54% were thought to be reared in uncomfortable environments (e.g., high temperature, high humidity). Aspergillosis may occur when individual risk factors and uncomfortable environmental factors are added to the risk factors of exposure to Aspergillus, such as the presence of soil. These conditions must be recognized as risk factors for aspergillosis, and appropriate preventive measures, such as avoiding penguin contact with the soil where Aspergillus is expected to be present, can minimize aspergillosis-related deaths.
AI snapshot
Written from the paper’s full text.
TL;DR
A nationwide JAZA questionnaire found that 73 of 2910 captive penguins (2.5%) died from aspergillosis across 35 of 64 responding facilities in Japan from April 2016 to March 2021. Risk was significantly associated with outdoor enclosures, movement outside rearing enclosures, and soil contact, while most deaths also had individual or environmental risk factors.
Key findings
- Of 64 responding facilities (72.0%), 35 reported penguin deaths from aspergillosis; 73 of 2910 penguins (2.5%) died over the 5 years from April 2016 to March 2021.
- Statistically higher death rates were reported for southern rockhopper (11.4%), little (10.2%), and Magellanic penguins (33.3%), but cases clustered in single facilities; excluding those facilities, there was no significant difference in death rate by species.
- Aspergillosis occurred significantly more often in groups using outdoor enclosures (35/74, 47% vs. 6/45, 13%; p < 0.01), moved outside rearing enclosures (19/35, 54% vs. 22/84, 26%; p < 0.01), and in contact with soil (20/32, 63%; p < 0.01). For Antarctic/sub-Antarctic penguins, outdoor vs. indoor housing was significant (p = 0.007); for temperate penguins, moving outside (p = 0.009) and soil contact (p = 0.019) were significant.
- In the additional survey of 54 dead penguins, 41 (76.0%) had at least one individual risk factor, 29 (53.7%) were thought to have been in an uncomfortable environment, and 26 (48.1%) had contact with soil; 52 of 54 had at least one individual, environmental, or soil-exposure risk factor. No significant reduction in aspergillosis was detected in facilities with five or more preventive measures.
Methods
- In September 2021, a questionnaire was sent through JAZA to 89 zoos and aquariums that bred penguins; 64 facilities responded, providing data on 2910 penguins of 11 species. The primary survey asked about species and numbers, aspergillosis deaths from April 2016 to March 2021, indoor/outdoor rearing environment, movement outside enclosures, preventive measures, and free-text comments.
- An additional questionnaire was sent to the 35 facilities reporting aspergillosis deaths; 30 responded regarding 54 dead penguins, with questions on month of occurrence, sex, age, transfer within the past year, molting or breeding period, suspected cause of death, hot/humid conditions, soil or plant contact, nesting box type, and bedding materials.
- Statistical analyses used chi-square test and residual analysis for species mortality, chi-square or Fisher’s exact test for environmental associations, and Wilcoxon rank-sum test for number of preventive measures; p < 0.05 was considered significant, using Excel add-in Statcel4.
Limitations
- The paper states that it did not obtain information on the type of soil used as basement material, and that the analysis did not confirm whether Aspergillus spores in the air or outdoor unsuitable temperature/humidity are risk factors.
- The paper notes that the earlier 1960s survey used different methods, so simple comparisons with the present mortality rate are difficult.
- Evident from the methods: case ascertainment and risk-factor attribution relied on facility questionnaires and respondent-reported causes, with no independent diagnostic confirmation or environmental sampling described in this survey; the 72.0% response rate and clustering of cases in single facilities may also affect species-level comparisons.
Model-written summary. Check it against the paper before relying on it.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
31 of 51 cited sources checked · 16 supported · 0 flagged · accuracy not yet measured
- Interpretationreasoning
Various improvements in zoos and aquariums, such as reference to and adherence to penguin breeding manuals and preventive management, were thought to have reduced the number of deaths.
“Although the climate in Japan is hot and humid for penguins, various improvements in zoos and aquariums, such as reference to and adherence to penguin breeding manuals [33] and preventive management [28,29,30], were thought to have reduced the number of deaths.”
Quote in the paperNot a substantial claim3 of 4 sources checked- cites [33] AZA Penguin Taxon Advisory Group (2014). Penguin (Spheniscidae) Care Manual, Association of Zoos and Aquariums.
Not checked in the free run.
- cites [28] Matsumoto, 2020, Detection of Aspergillus fumigatus in the captive environment and preventive measures leading to the eradication of penguin aspergillosis in an aquarium, Jpn. J. Zoo Wildl. Med. source
The paper describes preventive management at one aquarium, including washing penguins’ feet, avoiding a suspected contaminated route, and disinfecting affected areas. It reports that deaths from aspergillosis were no longer observed, but it does not establish that improvements across zoos and aquariums reduced penguin deaths generally. The relevant passages are labelled Abstract in our copy; no page number is supplied. (LLM, conf=0.83)
Experimental — accuracy not yet measured - cites [29] Toyotome, 2022, Countermeasures against aspergillosis in captive penguins, Med. Mycol. J. source
The Abstract and Conclusion describe preventive measures at one aquarium and report no new aspergillosis cases in its captive penguins since 2016. They do not report a reduction in penguin deaths across zoos and aquariums. The breeding-manual example is attached to a different citation in the citing sentence. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [30] Hocken, 2000, Cause of death in Blue penguins (Eudyptula m. minor) in North Otago, New Zealand, N. Z. J. Zool. source
The Abstract (page not provided) reports causes of death among blue penguins collected in North Otago, not whether preventive management reduced deaths in zoos or aquariums. Searches for preventive management, predator control, and reduced mortality found no passage addressing that claim. The breeding-manual citation [33] is separate from the citations being assessed here. (LLM, conf=0.72)
Experimental — accuracy not yet measured
- Rests on an assumption: The climate in Japan is hot and humid for penguins.
- Premisecitation
Soil is the major habitat of Aspergillus.
“Soil is the major habitat of Aspergillus [4,14,35].”
Quote in the paperSubstantial claim1 of 3 sources checked- cites [4] AZA Penguin Taxon Advisory Group (2014). Penguin (Spheniscidae) Care Manual, Association of Zoos and Aquariums.
Not checked in the free run.
- cites [14] Chamilos, 2019, Aspergillus fumigatus and Aspergillosis in 2019, Clin. Microbiol. Rev. source
The Introduction (page unavailable) identifies soil as the ecological niche of A. fumigatus. That supports the claim for this species, but the cited passage does not establish that soil is the major habitat of the entire Aspergillus genus. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [35] Summerbell, 1989, Potted plants in hospitals as reservoirs of pathogenic fungi, Mycopathologia source
- Premisecitation
Compost is one of the major sources of Aspergillus.
“As shown in some publications, compost is one of the major sources of Aspergillus [37].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [37] Zhang, 2017, A Novel Environmental Azole Resistance Mutation in Aspergillus Fumigatus and a Possible Role of Sexual Reproduction in Its Emergence, MBio source
The Introduction (page not specified) describes compost as an important biological niche for A. fumigatus with high densities of spores, and the Results report A. fumigatus in samples from two compost heaps. The paper does not establish that compost is one of the major sources of Aspergillus generally; the Discussion says compost could be a source of resistant A. fumigatus. (LLM, conf=0.84)
Experimental — accuracy not yet measured
- Premisecitation
Prevention of access to soil was a useful measure for reducing aspergillosis in an aquarium.
“As shown in our previous study, the prevention of access to soil was a useful measure for reducing aspergillosis in an aquarium [28,29].”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [28] Matsumoto, 2020, Detection of Aspergillus fumigatus in the captive environment and preventive measures leading to the eradication of penguin aspergillosis in an aquarium, Jpn. J. Zoo Wildl. Med. source
- cites [29] Toyotome, 2022, Countermeasures against aspergillosis in captive penguins, Med. Mycol. J. source
- Premisecitation
Even when housed indoors, air conditioners are associated with a risk of contamination with fungi including Aspergillus species.
“For example, even when housed indoors, air conditioners are associated with a risk of contamination with fungi including Aspergillus species.”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [28] Matsumoto, 2020, Detection of Aspergillus fumigatus in the captive environment and preventive measures leading to the eradication of penguin aspergillosis in an aquarium, Jpn. J. Zoo Wildl. Med. source
- cites [29] Toyotome, 2022, Countermeasures against aspergillosis in captive penguins, Med. Mycol. J. source
- Findingown data
Penguins that came in contact with soil had a significantly high incidence of aspergillosis (20/32; p < 0.01).
“Penguins that come in contact with soil had a significantly high incidence of aspergillosis (20 (63%) of 32; p < 0.01) (Table 3).”
Quote in the paperSubstantial claim- Rests on an assumption: Contact with soil is a valid proxy for exposure to Aspergillus spores.
- Findingown data
Among temperate penguin species, aspergillosis occurrence was significantly higher in groups having contact with soil (p = 0.019).
“The occurrence of aspergillosis was significantly high in groups of penguins with increased chances of moving outside of the rearing enclosures (p = 0.009) and in groups of penguins having contact with the soil (p = 0.019).”
Quote in the paperSubstantial claim- Rests on an assumption: Contact with soil is a valid proxy for exposure to Aspergillus spores.
- Findingown data
Of 2910 captive penguins in 64 JAZA facilities responding to the survey, 73 penguins (2.5%) died from aspergillosis during the 5 years from April 2016 to March 2021.
“Responses were obtained for 2910 penguins in 64 facilities; 73 penguins (2.5%) in 35 facilities had died from aspergillosis during the past 5 years from April 2016 to March 2021.”
- Also stated in: § 3.1. Incidence of Aspergillosis among Captive Penguins · plain
“Of the 64 facilities that responded to the questionnaire, 35 facilities reported penguin deaths from aspergillosis in the 5 years from April 2016 to March 2021; of the 2910 penguins, 73 (2.5%) died.”
Quote in the paperSubstantial claim- Rests on an assumption: The causes of death reported by keepers and veterinarians as aspergillosis were accurate.
- Rests on an assumption: The 64 responding facilities are representative of JAZA facilities that rear penguins.
- Also stated in: § 3.1. Incidence of Aspergillosis among Captive Penguins · plain
- Findingown data
Of 54 penguins that died from aspergillosis, 52 had at least one of the individual risk factors, uncomfortable environmental factors, and a risk of contact with soil.
“In total, 52 of 54 penguins that died of aspergillosis had at least one of the individual risk factors, uncomfortable environmental factors, and a risk of contact with soil (Figure 5).”
Quote in the paperSubstantial claim- Rests on an assumption: The causes of death reported by keepers and veterinarians as aspergillosis were accurate.
- Rests on an assumption: Contact with soil is a valid proxy for exposure to Aspergillus spores.
- Findingown data
Groups using outdoor enclosures had a significantly higher incidence of aspergillosis than groups using indoor enclosures (35/74 vs 6/45; p < 0.01).
“the groups that used outdoor enclosures (35 (47%) of 74) had a significantly higher incidence of aspergillosis than the groups that used indoor enclosures (6 (13%) of 45 groups; p < 0.01).”
Quote in the paperSubstantial claim- Rests on an assumption: The 64 responding facilities are representative of JAZA facilities that rear penguins.
- Findingown data
Among Antarctic/sub-Antarctic penguins, aspergillosis occurrence was significantly higher in groups reared in outdoor enclosures than in indoor enclosures (p = 0.007).
“Aspergillosis occurrence in Antarctic/sub-Antarctic penguins reared in outdoor enclosures was significantly high compared to those in indoor enclosures (p = 0.007; Table 4).”
Quote in the paperSubstantial claim- Rests on an assumption: The 64 responding facilities are representative of JAZA facilities that rear penguins.
- Findingown data
Only 7 of 54 penguins that died from aspergillosis had two or more individual risk factors.
“Additionally, only 7 of 54 cases had 2 or more risk factors, indicating that the risk factors were independent (Figure 3).”
Quote in the paperSubstantial claim- Rests on an assumption: The causes of death reported by keepers and veterinarians as aspergillosis were accurate.
- Findingown data
Among temperate penguin species, aspergillosis occurrence was significantly higher in groups with increased chances of moving outside of the rearing enclosures (p = 0.009).
“The occurrence of aspergillosis was significantly high in groups of penguins with increased chances of moving outside of the rearing enclosures (p = 0.009) and in groups of penguins having contact with the soil (p = 0.019).”
Quote in the paperSubstantial claim- Rests on an assumption: The 64 responding facilities are representative of JAZA facilities that rear penguins.
- Findingown data
Groups that moved outside of the rearing enclosures had a significantly higher incidence of aspergillosis than groups that did not move outdoors (19/35 vs 22/84; p < 0.01).
“the groups that moved outside of the rearing enclosures (19 (54%) of 35) had a significantly higher incidence of aspergillosis than the groups that did not move outdoors (22 (26%) of 84; p < 0.01).”
Quote in the paperSubstantial claim- Rests on an assumption: The 64 responding facilities are representative of JAZA facilities that rear penguins.
- Findingown data
No significant reduction in the incidence of aspergillosis was detected in facilities with five or more preventive measures.
“No significant reduction in the incidence of aspergillosis was detected in facilities with five or more measures (Figure 2).”
Quote in the paperSubstantial claim- Rests on an assumption: The number of preventive measures taken is a valid measure of preventive effort against aspergillosis.
- Findingown data
After excluding facilities with clustered deaths, there was no significant difference in aspergillosis death rate by penguin species.
“By analysis, excluding these facilities, there is no significant difference in death rate by species.”
Quote in the paperSubstantial claim- Rests on an assumption: The causes of death reported by keepers and veterinarians as aspergillosis were accurate.
- Findingown data
Of 54 penguins that died from aspergillosis in the additional survey, 41 (76.0%) had one or more putative individual risk factors.
“Of the 54 penguins, 41 (76.0%) had one or more of the following putative individual risk factors”
Quote in the paperSubstantial claim- Rests on an assumption: The causes of death reported by keepers and veterinarians as aspergillosis were accurate.
- Findingown data
Of 54 penguins that died from aspergillosis, 29 (53.7%) were believed to have been reared temporarily in unsuitable environments.
“A total of 29 (53.7%) penguins were believed to be reared temporarily in unsuitable environments with poor ventilation (8 penguins), high temperature and humidity (24 penguins), or poor sanitation (2 penguins) (Figure 4).”
Quote in the paperNot a substantial claim- Rests on an assumption: The causes of death reported by keepers and veterinarians as aspergillosis were accurate.
- Findingown data
35 of the 64 responding facilities reported penguin deaths from aspergillosis during April 2016-March 2021.
“Of the 64 facilities that responded to the questionnaire, 35 facilities reported penguin deaths from aspergillosis in the 5 years from April 2016 to March 2021; of the 2910 penguins, 73 (2.5%) died.”
Quote in the paperNot a substantial claim- Rests on an assumption: The causes of death reported by keepers and veterinarians as aspergillosis were accurate.
- Rests on an assumption: The 64 responding facilities are representative of JAZA facilities that rear penguins.
- Findingown data
Of 54 penguins that died from aspergillosis, 26 (48.1%) had contact with soil.
“Furthermore, 26 penguins (48.1%) had contact with soil.”
Quote in the paperSubstantial claim- Rests on an assumption: Contact with soil is a valid proxy for exposure to Aspergillus spores.
- Findingown data
The survey response rate was 64 of 89 JAZA facilities (72.0%).
“We received responses from 64 facilities (72.0%).”
- Also stated in: § 2.1. Primary Survey · plain
“we sent a questionnaire (Supplementary File S1) about aspergillosis in penguins to 89 zoos and aquariums (members of JAZA) that bred penguins. Sixty-four facilities responded to the questionnaire with information on 2910 penguins belonging to 11 species (Table 1), and these data were used in the analysis.”
Quote in the paperNot a substantial claim- Rests on an assumption: The 64 responding facilities are representative of JAZA facilities that rear penguins.
- Also stated in: § 2.1. Primary Survey · plain
- Findingnone given
In some facilities, penguins had access to soil.
“In some facilities, penguins also had access to soil.”
Quote in the paperSubstantial claim - Findingown data
Aspergillosis in Magellanic penguins was included in a sporadic outbreak (four of eight deaths from aspergillosis in one facility).
“Moreover, aspergillosis in Magellanic penguins was included in a sporadic outbreak (four of eight deaths from aspergillosis in one facility).”
Quote in the paperSubstantial claim - Findingown data
Only individual risk factors were detected in 13 penguins.
“However, only individual risk factors were detected in 13 penguins.”
Quote in the paperSubstantial claim - Findingown data
We could not find a significant improvement even after taking more than five measurements.
“However, we could not find a significant improvement even after taking more than five measurements.”
Quote in the paperSubstantial claim - Findingown data
Among temperate penguin species, the occurrence of aspergillosis was significantly higher when penguins were temporarily moved outside of their rearing enclosures and had access to soil.
“We found that the occurrence of aspergillosis among the temperate penguin species was significantly higher when the penguins were temporarily moved outside of their rearing enclosures and had access to soil.”
Quote in the paperSubstantial claim - Findingown data
Several king penguins, gentoo penguins, and southern rockhopper penguins died of aspergillosis.
“In contrast to emperor penguins, chinstrap penguins, and northern rockhopper penguins, several king penguins, gentoo penguins, and southern rockhopper penguins died of aspergillosis.”
Quote in the paperNot a substantial claim - Findingnone given
Southern rockhopper penguins, little penguins, and Magellanic penguins had significantly higher mortality rates than other penguins over the last five years.
“Southern rockhopper penguins, little penguins, and Magellanic penguins had significantly higher mortality rates than other penguins over the last five years.”
Quote in the paperSubstantial claim - Findingown data
Among Antarctic/sub-Antarctic penguin species, the occurrence of aspergillosis was significantly higher in those reared outdoors than in those reared indoors.
“The occurrence of aspergillosis was significantly higher among the Antarctic/sub-Antarctic penguin species reared outdoors than among those reared indoors, as shown in Table 4.”
Quote in the paperSubstantial claim - Findingown data
When our analysis excluded data from these facilities, we found no difference in mortality rates according to the penguin species.
“When our analysis excluded data from these facilities, we found no difference in mortality rates according to the penguin species.”
Quote in the paperSubstantial claim - Findingown data
According to keepers and veterinarians, 53.7% of the dead penguins had 1 or 2 uncomfortable environmental factors, such as high temperature, high humidity, poor sanitation, and poor ventilation.
“Keepers and veterinarians also answered that 53.7% of the dead penguins had 1 or 2 uncomfortable environmental factors, such as high temperature, high humidity, poor sanitation, and poor ventilation.”
Quote in the paperSubstantial claim - Findingown data
Aspergillosis cases in southern rockhopper penguins and little penguins were reported in one facility.
“However, aspergillosis cases in southern rockhopper penguins and little penguins were reported in one facility.”
Quote in the paperSubstantial claim - Findingown data
The Adélie penguin that died of aspergillosis was 8 months old.
“Using the additional questionnaire, we confirmed that the penguin was only 8 months old.”
Quote in the paperSubstantial claim - Findingown data
In a further analysis, 76.0% of penguins that died of aspergillosis had 1-3 individual risk factors.
“In a further analysis of the individual conditions of penguins that died of aspergillosis, 76.0% of them had 1–3 individual risk factors.”
Quote in the paperNot a substantial claim - Findingown data
Within the previous 5 years, 73 (2.5%) of 2910 captive penguins in Japan had died of aspergillosis.
“Within the previous 5 years, 73 (2.5%) of 2910 penguins had died of aspergillosis.”
Quote in the paperSubstantial claim - Findingown data
In several facilities where aspergillosis occurred, penguins had been kept outdoors and had opportunities to move outside of their housing.
“In several of the facilities where the aspergillosis occurred, penguins had been kept outdoors and had opportunities to move outside of their housing.”
Quote in the paperSubstantial claim - Findingown data
In 52 of 54 aspergillosis cases, the penguins had one or more individual, unpleasant environmental factors or risk factors of exposure to Aspergillus spores.
“Notably, in 52 of 54 aspergillosis cases, the penguins had one or more individual, unpleasant environmental factors or risk factors of exposure to Aspergillus spores.”
Quote in the paperSubstantial claim - Interpretationown data
The putative individual risk factors for aspergillosis in the surveyed penguins were independent.
“Additionally, only 7 of 54 cases had 2 or more risk factors, indicating that the risk factors were independent (Figure 3).”
Quote in the paperNot a substantial claim- Rests on an assumption: The causes of death reported by keepers and veterinarians as aspergillosis were accurate.
- Premisecitation
A survey on captive penguins was performed in 1972 by Inokashira Park Zoo.
“However, a survey on captive penguins was performed in 1972 by Inokashira Park Zoo [32].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [32] Inokashira park zoo (1971). A survey of captive penguins in Japan (Japanese). J. Jpn. Assoc. Zool. Gard. Aquar., 13, 62–69.
Not checked in the free run.
- Interpretationown data
Aspergillosis may occur when individual risk factors and uncomfortable environmental factors are added to risk factors of exposure to Aspergillus, such as the presence of soil.
“Aspergillosis may occur when individual risk factors and uncomfortable environmental factors are added to the risk factors of exposure to Aspergillus, such as the presence of soil.”
- Also stated in: § Simple Summary · hedged
“Aspergillosis was thought to occur when individual risk factors and uncomfortable environmental factors were present along with the risk of Aspergillus exposure.”
Quote in the paperSubstantial claim- Rests on an assumption: Aspergillosis is a major cause of mortality in captive penguins.
- Rests on an assumption: The causes of death reported by keepers and veterinarians as aspergillosis were accurate.
- Rests on an assumption: Contact with soil is a valid proxy for exposure to Aspergillus spores.
- Also stated in: § Simple Summary · hedged
- Interpretationown data
Our data suggest that younger penguins were highly susceptible to aspergillosis.
“Moreover, our data suggest that younger individuals were highly susceptible to aspergillosis.”
Quote in the paperSubstantial claim - Premisecitation
In a 10-year survey from 1960 to 1969 in Japan, 103 penguins were reported to show signs of aspergillosis.
“In a 10-year survey from 1960 to 1969 in Japan, 103 penguins were reported to show signs of aspergillosis [32].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [32] Inokashira park zoo (1971). A survey of captive penguins in Japan (Japanese). J. Jpn. Assoc. Zool. Gard. Aquar., 13, 62–69.
Not checked in the free run.
- Study design and conductreasoning
The analysis has a limitation because it did not confirm whether Aspergillus spores in the air or outdoor environment with unsuitable temperature or humidity is a risk factor.
“However, the analysis has a limitation because it did not confirm whether Aspergillus spores in the air or outdoor environment with unsuitable temperature or humidity is a risk factor.”
Quote in the paperSubstantial claim - Interpretationreasoning
It is difficult to eliminate contact with Aspergillus outdoors and even indoors.
“Aspergillus is ubiquitous both in soil and in the air; therefore, it is difficult to eliminate contact with Aspergillus outdoors and even indoors.”
Quote in the paperSubstantial claim- Rests on an assumption: Aspergillus is ubiquitous both in soil and in the air.
- Interpretationown data
Penguins with multiple risk factors are more likely to develop aspergillosis.
“These results suggest that penguins with multiple risk factors are more likely to develop aspergillosis.”
Quote in the paperSubstantial claim - Interpretationreasoning
Compared to the 1960s, approximately seven times or more penguins are currently reared in Japan.
“Compared to the 1960s, approximately seven times or more penguins are currently reared in Japan.”
Quote in the paperSubstantial claim - Interpretationreasoning
A strong possibility for the absence of aspergillosis in emperor, chinstrap, and northern rockhopper penguins is that they were kept indoors in cold conditions, resulting in less exposure to Aspergillus spores in the air and less heat stress.
“A strong possibility for this is the indoor rearing and cold conditions that the penguins were kept in; hence, they had less exposure to Aspergillus spores in the air and less heat stress.”
Quote in the paperSubstantial claim - Interpretationcitation
The 8-month-old Adélie penguin was at higher risk of infection compared with adult penguins.
“Therefore, this penguin was at higher risk of infection compared with adult penguins; it was also reared indoors and had no contact with soil.”
Quote in the paperSubstantial claim - Premisecitation
Based on the data, the rearing number of penguins each year in Japan was between 194 (1960) and 387 (1968).
“Based on the data, the rearing number of penguins each year in Japan was between 194 (1960) and 387 (1968).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [32] Inokashira park zoo (1971). A survey of captive penguins in Japan (Japanese). J. Jpn. Assoc. Zool. Gard. Aquar., 13, 62–69.
Not checked in the free run.
- Interpretationreasoning
Contact with soil was considered to increase the risk of developing aspergillosis in both Antarctic/sub-Antarctic and temperate penguin species.
“Although the breeding environments of the Antarctic/sub-Antarctic penguins differed from those of the temperate penguins, contact with soil was considered to increase the risk of developing aspergillosis in both types of species.”
Quote in the paperSubstantial claim - Interpretationown data
Outdoor enclosure is a risk factor for captive Antarctic/sub-Antarctic penguins.
“These data indicate that outdoor enclosure is a risk factor for captive Antarctic/sub-Antarctic penguins.”
Quote in the paperSubstantial claim - Interpretationown data
Older penguins might be susceptible to aspergillosis.
“Similar to younger penguins, older penguins might be susceptible to aspergillosis.”
Quote in the paperSubstantial claim - Interpretationreasoning
Taking into account the difference in population, it is suggested that the mortality rate is lower nowadays.
“However, taking into account the difference in population, it is suggested that the mortality rate is lower nowadays.”
Quote in the paperSubstantial claim - Interpretationown data
The effects of the rearing environment are more significant in the occurrence of aspergillosis than species differences.
“These data suggest that the effects of the rearing environment are more significant in the occurrence of aspergillosis than species differences.”
Quote in the paperSubstantial claim - Interpretationreasoning
Rearing enclosures that include soil and plants might increase the risk of aspergillosis in penguins.
“Therefore, such rearing enclosures might increase the risk of aspergillosis in penguins.”
Quote in the paperSubstantial claim - Interpretationreasoning
The significantly higher mortality rates were derived from the rearing environment rather than the high species susceptibility.
“Hence, the significantly higher mortality rates were derived from the rearing environment rather than the high species susceptibility.”
Quote in the paperSubstantial claim - Interpretationreasoning
The current situation of aspergillosis among captive penguins in Japan is not clear.
“Therefore, the current situation of aspergillosis among captive penguins in Japan is not clear.”
Quote in the paperSubstantial claim - Interpretationreasoning
These penguins were easily exposed to Aspergillus spores.
“There is no doubt that these penguins were easily exposed to Aspergillus spores.”
Quote in the paperSubstantial claim
- Classified as probably not a substantial claim. 28
- May combine two claims. 29
Probably not a substantial claim: may not pass S2 (checkable), S3 (load-bearing). May combine two claims.
PremisecitationTo prevent aspergillosis, contact with Aspergillus must be minimized in penguins and the health of each penguin should be maintained.
“Therefore, to prevent aspergillosis, contact with Aspergillus must be minimized in penguins, and the health of each penguin should be maintained [28,29,30,31].”
Quote in the paperNot a substantial claim3 of 4 sources checked- cites [28] Matsumoto, 2020, Detection of Aspergillus fumigatus in the captive environment and preventive measures leading to the eradication of penguin aspergillosis in an aquarium, Jpn. J. Zoo Wildl. Med. source
The paper describes avoiding a suspected A. fumigatus contamination site, washing penguins’ feet, and disinfecting contaminated areas—measures consistent with minimizing exposure (passage [6], section labeled Abstract; page unavailable). The passages do not recommend maintaining the health of each individual penguin, so that part of the claim is unsupported. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [29] Toyotome, 2022, Countermeasures against aspergillosis in captive penguins, Med. Mycol. J. source
- cites [30] Hocken, 2000, Cause of death in Blue penguins (Eudyptula m. minor) in North Otago, New Zealand, N. Z. J. Zool. source
The Abstract reports that aspergillosis was the commonest natural disease among the blue penguins examined, but it does not discuss prevention. Searches for Aspergillus exposure and penguin health found no passage recommending either measure in the claim. (LLM, conf=0.72)
Experimental — accuracy not yet measured - cites [31] Miller, R.E., and Fowler, M.E. (2015). Zoo and Wild Animal Medicine, Elsevier Saunders. [8th ed.].
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationAspergillus spores are hydrophobic and approximately 2.5 μm in diameter, allowing them to pass through the trachea to reach the air sacs and lungs and cause aspergillosis in immunocompromised humans and animals.
“Their spores are hydrophobic and extremely small, with a diameter of approximately 2.5 µm. Therefore, they easily pass through the trachea to reach the air sacs and lungs, which causes aspergillosis, a respiratory infection in immunocompromised humans and animals [4,20].”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [4] AZA Penguin Taxon Advisory Group (2014). Penguin (Spheniscidae) Care Manual, Association of Zoos and Aquariums.
Not checked in the free run.
- cites [20] Mateos, 2010, Polyclonal Aspergillus fumigatus infection in captive penguins, Vet. Microbiol. source
The Introduction (p. 2) describes aspergillosis as a fungal infection in birds, and §2.1 (Animals) reports A. fumigatus infection and lesions in the lungs and air sacs of penguins. Our copy does not state that spores are hydrophobic or approximately 2.5 µm across, that they pass through the trachea, or that this mechanism causes disease in immunocompromised humans and animals. (LLM, conf=0.86)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationAspergillus species are common fungi found in the environment, such as soil and air.
“The Aspergillus species [4,5,6,7,8,9,10,11,12,13] are common fungi found in the environment, such as soil and air [14,15,16,17,18,19].”
Quote in the paperNot a substantial claim4 of 6 sources checked- cites [14] Chamilos, 2019, Aspergillus fumigatus and Aspergillosis in 2019, Clin. Microbiol. Rev. source
- cites [15] Snelders, 2009, Possible environmental origin of resistance of Aspergillus fumigatus to medical triazoles, Appl. Environ. Microbiol. source
- cites [16] Verweij, 2009, Azole resistance in Aspergillus fumigatus: A side-effect of environmental fungicide use?, Lancet Infect. Dis. source
- cites [17] Sewell, 2019, Elevated prevalence of azole resistant Aspergillus fumigatus in urban versus rural environments in the United Kingdom, Antimicrob. Agents Chemother. source
The Introduction describes A. fumigatus as ubiquitous, with a soil niche and airborne conidia; the Environmental A. fumigatus isolates section also reports its recovery from soil samples. These passages support the claim for A. fumigatus, but do not establish it for Aspergillus species generally. (LLM, conf=0.82)
Experimental — accuracy not yet measured - cites [18] Hirose, 2022, Diversity and distribution of Aspergillus fumigatus and its related species in Izu and Ogasawara islands, Japan, Med. Mycol. J. source
- cites [19] Toyotome, 2022, Azole-resistant Aspergillus fumigatus as an emerging worldwide pathogen, Microbiol. Immunol. source
May combine two claims.
PremisecitationIn a previous report from the authors' aquarium, six aspergillosis cases occurred between 2009 and 2015, and no aspergillosis occurred from 2016 to 2020 after implementing measures to minimize penguin contact with soil.
“As a result, although the aquarium had six aspergillosis cases between 2009 and 2015, there was no incidence of aspergillosis from 2016 to 2020 [28,29].”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [28] Matsumoto, 2020, Detection of Aspergillus fumigatus in the captive environment and preventive measures leading to the eradication of penguin aspergillosis in an aquarium, Jpn. J. Zoo Wildl. Med. source
Split into 2 atoms — 0 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 1 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured - cites [29] Toyotome, 2022, Countermeasures against aspergillosis in captive penguins, Med. Mycol. J. source
Classified as probably not a substantial claim.
PremisecitationAspergillosis is considered an opportunistic infectious disease.
“Aspergillosis is considered an opportunistic infectious disease [4,20].”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [4] AZA Penguin Taxon Advisory Group (2014). Penguin (Spheniscidae) Care Manual, Association of Zoos and Aquariums.
Not checked in the free run.
- cites [20] Mateos, 2010, Polyclonal Aspergillus fumigatus infection in captive penguins, Vet. Microbiol. source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationA. fumigatus is the most pathogenic Aspergillus species causing severe respiratory symptoms in wild birds and poultry.
“In particular, A. fumigatus is the most pathogenic species that causes severe respiratory symptoms in wild birds and poultry [21,22].”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [21] Thomas, N.J., Hunter, D.B., and Atkinson, C.T. (2008). Infectious Diseases of Wild Birds, Blackwell Publishing Professional. source
- cites [22] Obendorf, 1980, Mortality in little penguins (Eudyptula minor) along the coast of Victoria, Australia, J. Wildl. Dis. source
The penguin findings (section labelled “Contracaecum spiculigerum”; page unavailable) report pulmonary aspergillosis in two wild birds, and Histopathology describes lesions in their lungs and air sacs. The paper does not identify A. fumigatus, compare the pathogenicity of Aspergillus species, report severe respiratory symptoms, or address poultry. (LLM, conf=0.84)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S2 (checkable), S3 (load-bearing).
InterpretationcitationNew technologies such as diagnosis with image analysis, plasma biomarkers, and probiotic-based vaccination might be useful in reducing the incidence of aspergillosis among penguins.
“New technologies, such as diagnosis with image analysis [25,27], plasma biomarkers [38], and probiotic-based vaccination [39], might be useful in reducing the incidence of aspergillosis among penguins.”
Quote in the paperNot a substantial claim4 of 4 sources checked- cites [25] Itoh, 2020, Characteristic imaging findings of the respiratory ssystem in penguins with suspected aspergillosis in an aquarium, J. Vet. Med. Sci. source
The Discussion says CT findings, combined with blood screening, could help diagnose aspergillosis early and initiate treatment in penguins. It suggests early detection could prevent deaths, but does not show that imaging reduces the incidence of infection. The plasma-biomarker and probiotic-vaccination parts of the citing sentence have separate citations and are not attributed to this paper. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [27] Matsumoto, 2022, Evaluation of the air sac volume of penguins with respiratory diseases using computed tomography, J. Vet. Med. Sci. source
- cites [38] Desoubeaux, 2018, Application of 3-Hydroxybutyrate measurement and plasma protein electrophoresis in the diagnosis of aspergillosis in African penguins (Spheniscus demersus), J. Zoo Wildl. Med. source
The conclusion (section labeled “200”) says 3-hydroxybutyrate measurement may help diagnose aspergillosis in penguins, especially alongside plasma protein electrophoresis. This supports the plasma-biomarker part of the citing sentence, but the paper does not establish that these tests reduce the incidence of aspergillosis. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [39] Thorel, 2022, Assessment of the safety and efficacy of an oral probiotic-based vaccine against Aspergillus infection in captive-bred Humboldt penguins (Spheniscus humboldti), Front. Immunol. source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationIn our previous study, Aspergillus fumigatus was detected from air conditioner vents.
“In our previous study [28,29], A. fumigatus was detected from air conditioner vents.”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [28] Matsumoto, 2020, Detection of Aspergillus fumigatus in the captive environment and preventive measures leading to the eradication of penguin aspergillosis in an aquarium, Jpn. J. Zoo Wildl. Med. source
- cites [29] Toyotome, 2022, Countermeasures against aspergillosis in captive penguins, Med. Mycol. J. source
The section discussing the previous study reports that swabs detected A. fumigatus on air conditioners and exhaust fans in the penguin rearing facility. It does not identify the sampled surfaces as air-conditioner vents specifically. (LLM, conf=0.83)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationIn the case of Okinawa rail, the authors described the environmental source of the causative agent.
“In the case of Okinawa rail, the authors described the environmental source of the causative agent [36].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [36] Kano, 2021, Antifungal drugs-low-susceptibility in Aspergillus Flavus isolated from a captively reared Okinawa rail (Hypotaenidia okinawae), J. Vet. Med. Sci. source
The paper describes soil and dead leaves in the rail’s enclosure as a possible source of Aspergillus infection. It also states that the authors found no evidence of the route of infection in this case, so it does not establish the environmental source of the causative agent. (LLM, conf=0.88)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationA mass outbreak of aspergillosis in kākāpō and one case in Okinawa rail were reported.
“Recently, a mass outbreak of aspergillosis in kākāpō (Strigops habroptilus) and one case in Okinawa rail (Hypotaenidia okinawae) were reported [34,36].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [34] Winter, 2022, A single fungal strain was the unexpected cause of a mass aspergillosis outbreak in the world’s largest and only flightless parrot, iScience source
- cites [36] Kano, 2021, Antifungal drugs-low-susceptibility in Aspergillus Flavus isolated from a captively reared Okinawa rail (Hypotaenidia okinawae), J. Vet. Med. Sci. source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationIn the mass outbreak in kākāpō, a single strain caused aspergillosis, and the association between the ambient environment and aspergillosis was considered an important risk factor.
“In the mass outbreak in kākāpō, a single strain caused aspergillosis, and the association between the ambient environment and aspergillosis was considered an important risk factor [34].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [34] Winter, 2022, A single fungal strain was the unexpected cause of a mass aspergillosis outbreak in the world’s largest and only flightless parrot, iScience source
Probably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataThe main reason for moving penguins outside of the rearing enclosures was walking exercise (68% of groups).
“The main reason for moving penguins outside of the rearing enclosures was for walking exercise (68% of groups).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataStatistically higher aspergillosis death rates were reported among southern rockhopper (11.4%), little (10.2%), and Magellanic penguins (33.3%).
“Statistically higher death rates were reported among southern rockhopper (11.4%), little (10.2%), and Magellanic penguins (33.3%; Table 2).”
Quote in the paperNot a substantial claim- Rests on an assumption: The causes of death reported by keepers and veterinarians as aspergillosis were accurate.
May combine two claims.
Findingown dataAmong Antarctic/sub-Antarctic penguins, contact with soil was associated with a higher incidence of aspergillosis (2/3 vs 6/43), but the difference was not significant (p = 0.073).
“Penguins that had contact with soil had a higher incidence of aspergillosis (2 of 3 groups) than those that did not have contact with soil in the rearing environment (6 of 43 groups). However, there was no significant difference between with and without aspergillosis groups (p = 0.073; Table 4).”
Quote in the paperNot a substantial claim- Rests on an assumption: Contact with soil is a valid proxy for exposure to Aspergillus spores.
May combine two claims.
Findingown data26 of 54 dead penguins had contact with soil, and at least 48.1% were at risk of exposure to Aspergillus spores.
“Furthermore, 26 of 54 dead penguins had contact with soil, and at least 48.1% of the penguins were at risk of exposure to Aspergillus spores.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe Adélie penguin was reared indoors and had no contact with soil.
“it was also reared indoors and had no contact with soil.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe occurrence of aspergillosis in penguins was strongly related to outdoor enclosures of penguins (p < 0.01), moving of penguins outside the rearing enclosures (p < 0.01), and contact with soil (p < 0.01).
“In accordance with these results, the occurrence of aspergillosis in penguins was strongly related to outdoor enclosures of penguins (p < 0.01), moving of penguins outside the rearing enclosures (p < 0.01), and contact with soil (p < 0.01).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe individual risk factors were being younger than a year, older than 20 years, or transferred from other facilities within the past year.
“That is, they were younger than a year, were older than 20 years, or had been transferred from other facilities within the past year.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataIn this study, only uncomfortable environmental factors were detected in one penguin, and only exposure to Aspergillus spores was detected in four penguins.
“In this study, only uncomfortable environmental factors were detected in one penguin, and only exposure to Aspergillus spores was detected in four penguins.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataFor Antarctic/sub-Antarctic penguin species, the correlation between aspergillosis occurrence and contact with soil was not significant, but the number of facilities where these species had access to soil was less.
“The correlation between the occurrence of aspergillosis and contact with soil was not significant for the Antarctic/sub-Antarctic penguin species; however, the number of facilities where these species had access to soil was less.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataOne Adélie penguin died of aspergillosis, and this was the only case of death due to aspergillosis among 500 penguins at the facility.
“One Adélie penguin died of aspergillosis, but this was the only case of death due to aspergillosis among 500 penguins at the facility.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingnone givenSome facilities include soil and plants in outdoor penguin enclosures to resemble their habitats in the wild.
“Some facilities include soil and plants in outdoor penguin enclosures to resemble their habitats in the wild.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
FindingreasoningMany facilities had implemented various countermeasures to decrease the incidence of aspergillosis among penguins, including prevention, early detection, and preemptive aggressive treatment, of which some are crucial.
“Many facilities had implemented various countermeasures to decrease the incidence of aspergillosis among penguins, including prevention, early detection, and preemptive aggressive treatment, of which some are crucial.”
Quote in the paperNot a substantial claimMay combine two claims.
FindingreasoningIn this study, aspergillosis was not observed in emperor penguins, chinstrap penguins, or northern rockhopper penguins.
“Aspergillosis was not observed in emperor penguins, chinstrap penguins, or northern rockhopper penguins in this study.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationAccording to the AZA Penguin Care Manual, optimal air temperature ranges are −6 °C to 7 °C for Antarctic/sub-Antarctic penguins and 4.5 °C to 26.5 °C for temperate penguins.
“For Antarctic/sub-Antarctic penguin species, the optimal air temperature ranges from −6 °C to 7 °C. However, the optimal air temperature of temperate penguins ranges from 4.5 °C to 26.5 °C.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [3] AZA Penguin Taxon Advisory Group (2014). Penguin (Spheniscidae) Care Manual, Association of Zoos and Aquariums.
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationAspergillosis might occur in stressed conditions, and putative stressors include inadequate heat or cold environment, stressful relocation, breeding, and molting.
“Aspergillosis might occur in stressed conditions. Putative stressors have been associated with inadequate heat or cold environment, stressful relocation, breeding, and molting [4].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [4] AZA Penguin Taxon Advisory Group (2014). Penguin (Spheniscidae) Care Manual, Association of Zoos and Aquariums.
Not checked in the free run.
Probably not a substantial claim: may not pass S4 (based).
Premisenone givenAspergillus is ubiquitous in soil.
“Aspergillus is ubiquitous in soil.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationWaterbirds in captivity are more susceptible to aspergillosis than land birds.
“Hllgarth and Kear [23] revealed that waterbirds in captivity are more susceptible to aspergillosis than land birds.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [23] Hillgarth, 1979, Diseases of seaducks in captivity, Wildfowl
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationThe three most common Aspergillus species causing aspergillosis are A. fumigatus, A. niger, and A. flavus, which are also major producers of mycotoxin aflatoxin.
“The three most common species of the Aspergillus genus that cause aspergillosis are A. fumigatus, A. niger, and A. flavus, which are also major producers of mycotoxin aflatoxin [21].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [21] Thomas, N.J., Hunter, D.B., and Atkinson, C.T. (2008). Infectious Diseases of Wild Birds, Blackwell Publishing Professional. source
Probably not a substantial claim: may not pass S2 (checkable).
Interpretationown dataEnvironmental interventions, such as keeping away from soil, might be effective in further reducing the incidence of aspergillosis.
“As further measures, environmental interventions, such as keeping away from soil, might be effective in further reducing the incidence of aspergillosis.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S2 (checkable).
InterpretationreasoningCombined measures focusing on individual and environmental risk factors and consultation with keepers, veterinarians, and microbiologists can be useful in controlling the incidence of aspergillosis.
“Combined measures focusing on individual and environmental risk factors as well as consultation of keepers, veterinarians, and microbiologists, such as mycobiologists, regarding rearing environment can be useful in controlling the incidence of aspergillosis.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
InterpretationreasoningClothes and items brought into rearing facilities cause the invasion of Aspergillus spores in facilities.
“Moreover, Aspergillus is extremely common in the environment, which suggests that clothes and items brought into rearing facilities cause the invasion of Aspergillus spores in facilities.”
Quote in the paperNot a substantial claim- Rests on an assumption: Aspergillus is extremely common in the environment.
May combine two claims.
InterpretationreasoningIn temperate penguin species, contact with other penguins and soil increased exposure to Aspergillus spores, which might be a risk factor for aspergillosis.
“Even in temperate penguin species, contact with other penguins and soil increased exposure to Aspergillus spores, which might be a risk factor for aspergillosis.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationFlach et al. reported that chicks (≤1 year) of gentoo penguins were the most susceptible.
“Flach et al. [7] reported that chicks (≤1 year) of gentoo penguins were the most susceptible.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [7] Flach, 1990, Aspergillosis in gentoo penguins (Pygoscelis papua) at Edinburgh Zoo, 1964–1988, Vet. Rec.
May combine two claims.
InterpretationreasoningThe death rate from aspergillosis in captive penguins in Japan is currently much lower, and the preventive measures implemented are effective as basic measures.
“However, the death rate is currently much lower, and the preventive measures implemented are effective as basic measures.”
Quote in the paperSubstantial claimClassified as probably not a substantial claim.
Study design and conductnone givenWe did not obtain information on the type of soil used for the basement in this survey.
“However, we did not obtain information on the type of soil used for the basement in this survey.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataAspergillosis in captive penguins was caused by the combination of individual risk factors (young and old ages), uncomfortable environments (high temperature and humidity), and rearing environments susceptible to exposure to Aspergillus spores (such as contact with soil).
“As demonstrated in this study, aspergillosis was caused by the combination of individual risk factors, such as young and old ages; uncomfortable environments, such as high temperature and humidity; and rearing environments susceptible to exposure to Aspergillus spores, such as contact with soil.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
InterpretationreasoningThe results obtained in this study agree with our previous results.
“The results obtained in this study agree with our previous results.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductreasoningThe methods of investigation of the earlier research differed from ours; therefore, simple comparisons are difficult to make.
“The methods of investigation of the earlier research differed from ours; therefore, simple comparisons are difficult to make.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationTo the best of the authors' knowledge, surveys of aspergillosis in captive penguins have not been reported in Japan for several decades, and a nationwide survey on the occurrence of aspergillosis, rearing conditions, and countermeasures has not been performed for several decades in Japan.
“To the best of our knowledge, surveys of aspergillosis in captive penguins have not been reported in Japan for several decades.”
- Also stated in: § Simple Summary · plain
“In addition, a nationwide survey on the occurrence of aspergillosis, rearing conditions, and countermeasures has not been performed for several decades in Japan.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [32] Inokashira park zoo (1971). A survey of captive penguins in Japan (Japanese). J. Jpn. Assoc. Zool. Gard. Aquar., 13, 62–69.
Not checked in the free run.
- Also stated in: § Simple Summary · plain
May combine two claims.
Interpretationnone givenCaptive penguins in Japan are exposed to hot and humid conditions, and their immune systems may be weakened as a result of young or old age.
“In addition, captive penguins are exposed to hot and humid conditions in Japan, and their immune systems may be weakened as a result of young or old age.”
Quote in the paperSubstantial claim- Rests on an assumption: The climate in Japan is hot and humid for penguins.
Probably not a substantial claim: may not pass S2 (checkable). May combine two claims.
InterpretationreasoningEnvironmental interventions might be an effective and easy method for decreasing the risk of aspergillosis, which should be considered a priority.
“However, environmental interventions might be an effective and easy method for decreasing the risk of aspergillosis, which should be considered a priority.”
Quote in the paperNot a substantial claimMay combine two claims.
Interpretationown dataThe trends in temperate penguin species are similar to those of Antarctic/sub-Antarctic penguin species, with out-of-home migration and contact with soil as the major risk factors for aspergillosis development.
“The trends in temperate penguin species, as shown in Table 4, are similar to those of Antarctic/sub-Antarctic penguin species as discussed above, with out-of-home migration and contact with soil as the major risk factors for aspergillosis development.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataUncomfortable environmental factors were a source of stress for the penguins and a possible risk factor for the development of aspergillosis.
“These uncomfortable environmental factors were a source of stress for the penguins and a possible risk factor for the development of aspergillosis.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationAspergillosis is common among birds younger than 1 year.
“According to a previous report, aspergillosis is common among birds younger than 1 year [7].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [7] Flach, 1990, Aspergillosis in gentoo penguins (Pygoscelis papua) at Edinburgh Zoo, 1964–1988, Vet. Rec.
May combine two claims.
InterpretationreasoningMultiple risk factors were involved in the development of aspergillosis, but other risks were not validated in this study.
“Although multiple risk factors were involved in the development of aspergillosis, other risks were not validated in this study.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationAntarctic/sub-Antarctic penguins are already recommended to be housed in cooler temperatures than temperate species.
“The Antarctic/sub-Antarctic penguins are already recommended to be housed in cooler temperatures than temperate species [3].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [3] AZA Penguin Taxon Advisory Group (2014). Penguin (Spheniscidae) Care Manual, Association of Zoos and Aquariums.
Not checked in the free run.
The paper relies on this without support.
Aspergillosis is a major cause of mortality in captive penguins.
“Aspergillosis is a fungal respiratory infectious disease in humans and animals and a major cause of mortality in captive penguins.”
“Aspergillosis is one of the leading causes of death in captive penguins.”
The paper relies on this without support.
The efficacy of rearing conditions and countermeasures in preventing aspergillosis has not been investigated sufficiently.
“However, their efficacy has not been investigated sufficiently.”
The paper relies on this without support.
In Japan, nationally standardized guidelines for the care of penguins have not been established.
“In Japan, nationally standardized guidelines for the care of penguins have not been established.”
The paper relies on this without support.
The causes of death reported by keepers and veterinarians as aspergillosis were accurate.
“species and the number of penguins that had died of aspergillosis in the 5 years from April 2016 to March 2021”
“cause of death suspected by respondents”
The paper relies on this without support.
Contact with soil is a valid proxy for exposure to Aspergillus spores.
“Moreover, the probability of contact between penguins and soil as a risk factor for exposure to Aspergillus spores was aggregated.”
The paper relies on this without support.
The 64 responding facilities are representative of JAZA facilities that rear penguins.
“we sent a questionnaire (Supplementary File S1) about aspergillosis in penguins to 89 zoos and aquariums (members of JAZA) that bred penguins. Sixty-four facilities responded to the questionnaire with information on 2910 penguins belonging to 11 species (Table 1), and these data were used in the analysis.”
The paper relies on this without support.
The questionnaire responses accurately reflect the rearing environments and preventive measures at the facilities.
“Based on these responses, we initially determined the number and mortality rate of aspergillosis in each penguin species.”
The paper relies on this without support.
The number of preventive measures taken is a valid measure of preventive effort against aspergillosis.
“We examined the association between the number of measures and incidence of aspergillosis.”
The paper relies on this without support.
Aspergillus is extremely common in the environment.
“Moreover, Aspergillus is extremely common in the environment, which suggests that clothes and items brought into rearing facilities cause the invasion of Aspergillus spores in facilities.”
The paper relies on this without support.
Kākāpō, Okinawa rail, and penguins are flightless birds, and they walk on the soil.
“Kākāpō, Okinawa rail, and penguins are flightless birds, and they walk on the soil.”
The paper relies on this without support.
Aspergillus is ubiquitous both in soil and in the air.
“Aspergillus is ubiquitous both in soil and in the air; therefore, it is difficult to eliminate contact with Aspergillus outdoors and even indoors.”
The paper relies on this without support.
The climate in Japan is hot and humid for penguins.
“Although the climate in Japan is hot and humid for penguins, various improvements in zoos and aquariums, such as reference to and adherence to penguin breeding manuals [33] and preventive management [28,29,30], were thought to have reduced the number of deaths.”
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
Conflicting totals for Magellanic penguin deaths
MinorThe Results report 13 Magellanic penguin deaths from aspergillosis, but the Discussion describes the same single-facility cluster as four of eight deaths. Both passages say four deaths occurred at one facility, but they give different totals.
“although 13 deaths of Magellanic penguins were reported in 7 facilities of the survey, 4 of 13 deaths occurred at a single facility.”
“aspergillosis in Magellanic penguins was included in a sporadic outbreak (four of eight deaths from aspergillosis in one facility).”
Cites
Aspergillus fumigatus and Aspergillosis in 2019
Latgé, J.-P., & Chamilos, G. (2019) · Clinical Microbiology Reviews · doi:10.1128/cmr.00140-18 · Cited by 1,400 · see citing works
Azole resistance in Aspergillus fumigatus: a side-effect of environmental fungicide use?
Verweij, P. E., Snelders, E., Kema, G. H., Mellado, E., & Melchers, W. J. (2009) · The Lancet Infectious Diseases · doi:10.1016/s1473-3099(09)70265-8 · Cited by 604 · see citing works
Possible Environmental Origin of Resistance of <i>Aspergillus fumigatus</i> to Medical Triazoles
Snelders, E., Huis in 't Veld, R. A. G., Rijs, A. J. M. M., Kema, G. H. J., Melchers, W. J. G., & Verweij, P. E. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.00231-09 · Cited by 423 · see citing works
Infectious Diseases of Wild Birds
(2007) · doi:10.1002/9780470344668 · Cited by 269 · see citing works
Potted plants in hospitals as reservoirs of pathogenic fungi
Summerbell, R. C., Krajden, S., & Kane, J. (1989) · Mycopathologia · doi:10.1007/bf00436921 · Cited by 131 · cited 1× · see citing works
“Soil is the major habitat of Aspergillus [4,14,35].”
BackgroundZhang, J., Snelders, E., Zwaan, B. J., Schoustra, S. E., Meis, J. F., van Dijk, K., Hagen, F., van der Beek, M. T., Kampinga, G. A., Zoll, J., et al. (2017) · mBio · doi:10.1128/mbio.00791-17 · Cited by 129 · see citing works
Aspergillosis: a limiting factor during recovery of captive magellanic penguins
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The Incidence of Aspergillosis in Captive Wild Birds
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Azole‐resistant <i>Aspergillus fumigatus</i> as an emerging worldwide pathogen
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Self-citationAspergillosis in imported penguins
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ALTERAÇÕES CLÍNICAS E PATOLÓGICAS DA ASPERGILOSE EM PINGUINS-DE-MAGALHÃES (Spheniscus magellanicus)
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Autopsy imaging for aspergillosis in King Penguin, an economically valuable zoo animal
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Thorel, M., Mateos-Hernandez, L., Mulot, B., Azzouni, M. N., Hodžić, A., Gaillot, H., Ruel, Y., Desoubeaux, G., Delaye, J.-B., Obregon, D., et al. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.897223 · Cited by 11 · see citing works
ITOH, M., TOYOTOME, T., MATSUMOTO, N., OKAMOTO, M., WATANABE, K.-I., & YAMADA, K. (2020) · Journal of Veterinary Medical Science · doi:10.1292/jvms.20-0129 · Cited by 9 · see citing works
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Consideration on the Vaccination to Captive Rare and Endangered Species Based on Their Conditions
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Evaluation of the air sac volume of penguins with respiratory diseases using computed tomography
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Self-citation
Flagged first, then by citations
2 of the 36 references couldn’t be matched to a known paper.
Research works printed but not linked: 5
- AZA Penguin Taxon Advisory Group (2014). Penguin (Spheniscidae) Care Manual, Association of Zoos and Aquariums.
- AZA Penguin Taxon Advisory Group (2014). Penguin (Spheniscidae) Care Manual, Association of Zoos and Aquariums.
- Xavier, 2011, Clinical and pathological findings of Aspergillosis in Magellanic penguins (Spheniscus magellanicus), Ciênc Anim. Bras., 12, 520
- Miller, R.E., and Fowler, M.E. (2015). Zoo and Wild Animal Medicine, Elsevier Saunders. [8th ed.].
- AZA Penguin Taxon Advisory Group (2014). Penguin (Spheniscidae) Care Manual, Association of Zoos and Aquariums.
Cited by
Sorted by citations
Plewa-Tutaj, K., Chmielewska, Z., Twarużek, M., et al. (2025) · Pathogens · doi:10.3390/pathogens14040332 · Cited by 3 · see citing works
“Another research conducted in a colony of Humboldt penguins at a Parisian zoo found that the burden of Aspergillus spores in penguin nests significantly rises with increasing outdoor temperatures [18].”
Matsumoto, N., Itoh, M., Toyotome, T., Hagino, K., Neo, S., & YAMADA, K. (2024) · Journal of Veterinary Medical Science · doi:10.1292/jvms.23-0368 · Cited by 1 · see citing works
“Additionally, healthy penguins are sometimes administered antifungal drugs as a preventive measure [3, 6].”
BackgroundSelf-citationItoh, M., KITAHARA, M., Sawayama, N., et al. (2024) · Journal of Veterinary Medical Science · doi:10.1292/jvms.24-0112 · Cited by 1 · see citing works
Self-citationZea, S. M. R., Nakaya, Y., Takahashi, H., Nagamine, T., Yaguchi, T., & Toyotome, T. (2025) · Frontiers in Veterinary Science · doi:10.3389/fvets.2025.1675145
“Contact with soil was reported to be related to the occurrence of aspergillosis cases in penguins (19).”
Self-citationRevisiting Sapronoses Through Aspergillosis
Toyotome, T. (2026) · Medical Mycology Journal · doi:10.3314/mmj.26.005
Self-citation
- Authors
- Itoh, M., Matsumoto, N., Hagino, K., Sawayama, N., Kuwayama, M., Yamada, K., & Toyotome, T.
- Affiliations
- Obihiro University of Agriculture and Veterinary Medicine (JP)
- Azabu University (JP)
- Noboribetsu Marine Park Nixe, Noboribetsu 059-0492, Hokkaido, Japan
- Chiba University (JP)
- Corresponding author
- Toyotome, Takahito
- Venue
- Animals
- Publisher
- MDPI AG
- Published
- 2023-06-08
- Volume
- 13
- Issue
- 12
- Pages
- 1913
- ISSN
- 2076-2615 (ISSN-L)
- PMC
- PMC10295018
- OpenAlex
- W4379882519
- Semantic Scholar
- ed1563fba49da6c18f2c2fffb14e42daca547f73
- Cited by
- 5
- References
- 36
- Citations by year
- 2026: 1 · 2025: 2 · 2024: 2
- FWCI
- 0.93
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Animals (publishedVersion, cc-by)
- PubMed (publishedVersion)
- PubMed Central (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Institutional Repositories DataBase (IRDB) (submittedVersion)
- Funders
- Japan Society for the Promotion of Science KAKENHI (C) (21K05931)
- Topics
- Health Sciences › Medicine › Infectious Diseases › Antifungal resistance and susceptibility
- Health Sciences › Veterinary › Small Animals › Animal Behavior and Welfare Studies
- Health Sciences › Medicine › Epidemiology › Fungal Infections and Studies
- Keywords
- aspergillosis, captive penguins, zoo animals, aquarium animals, Aspergillus, disease incidence, risk factors, environmental risk factors, soil exposure, preventive measures
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-27.
Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-27.
Cited sources are checked by gpt-6-sol.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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