Gabaldón, Toni

Whole-genome analyses resolve early branches in the tree of life of modern birds

Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., et al. (2014) · Science

Genomics and Phylogenetic StudiesEvolution and Paleontology Studies

Cited by 1,901

The genome of melon ( Cucumis melo L.)

Garcia-Mas, J., Benjak, A., Sanseverino, W., Bourgeois, M., Mir, G., González, V. M., Hénaff, E., Câmara, F., Cozzuto, L., Lowy, E., et al. (2012) · Proceedings of the National Academy of Sciences

Advances in Cucurbitaceae ResearchGenomics and Phylogenetic Studies

Cited by 744

eggNOG v4.0: nested orthology inference across 3686 organisms

Powell, S., Forslund, K., Szklarczyk, D., Trachana, K., Roth, A., Huerta-Cepas, J., Gabaldón, T., Rattei, T., Creevey, C., Kuhn, M., et al. (2014) · Nucleic Acids Research

Genomics and Phylogenetic StudiesBioinformatics and Genomic Networks

Cited by 652

Functional and evolutionary implications of gene orthology

Gabaldón, T., & Koonin, E. V. (2013) · Nature Reviews Genetics

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 643

How genomics can help biodiversity conservation

Theissinger, K., Fernandes, C., Formenti, G., Bista, I., Berg, P. R., Bleidorn, C., Bombarely, A., Crottini, A., Gallo, G. R., Godoy, J. A., et al. (2023) · Trends in Genetics

Genomics and Phylogenetic StudiesGenetic diversity and population structure

Cited by 401

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

Green, R. E., Braun, E. L., Armstrong, J., Earl, D., Nguyen, N., Hickey, G., Vandewege, M. W., St. John, J. A., Capella-Gutiérrez, S., Castoe, T. A., et al. (2014) · Science

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 359

The era of reference genomes in conservation genomics

Formenti, G., Theissinger, K., Fernandes, C., Bista, I., Bombarely, A., Bleidorn, C., Ciofi, C., Crottini, A., Godoy, J. A., Höglund, J., et al. (2022) · Trends in Ecology & Evolution

Genomics and Phylogenetic StudiesGenetic diversity and population structure

Cited by 340

Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry

Pittis, A. A., & Gabaldón, T. (2016) · Nature

Protist diversity and phylogenyGenomics and Phylogenetic Studies

Cited by 259

Worldwide emergence of fluconazole-resistant Candida parapsilosis: current framework and future research roadmap

Daneshnia, F., de Almeida Júnior, J. N., Ilkit, M., Lombardi, L., Perry, A. M., Gao, M., Nobile, C. J., Egger, M., Perlin, D. S., Zhai, B., et al. (2023) · The Lancet Microbe

Antifungal resistance and susceptibilityFungal Plant Pathogen Control

Cited by 257

Evolutionary Emergence of Drug Resistance in Candida Opportunistic Pathogens

Ksiezopolska, E., & Gabaldón, T. (2018) · Genes

Antifungal resistance and susceptibilityFungal and yeast genetics research

Cited by 230

Ancient dispersal of the human fungal pathogen Cryptococcus gattii from the Amazon rainforest

Hagen, F., Ceresini, P. C., Polacheck, I., Ma, H., Nieuwerburgh, F. V., Gabaldón, T., Kagan, S., Pursall, E. R., Hoogveld, H. L., van Iersel, L. J. J., et al. (2013) · PLoS ONE

Fungal Infections and StudiesGenetic diversity and population structure

Cited by 218

PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome

Huerta-Cepas, J., Capella-Gutiérrez, S., Pryszcz, L. P., Marcet-Houben, M., & Gabaldón, T. (2014) · Nucleic Acids Research

Genomics and Phylogenetic StudiesBioinformatics and Genomic Networks

Cited by 217

Comparative genomics of emerging pathogens in the Candida glabrata clade.

Gabaldón, T., Martin, T., Marcet-Houben, M., Durrens, P., Bolotin-Fukuhara, M., Lespinet, O., Arnaise, S., Boisnard, S., Aguileta, G., Atanasova, R., et al. (2013) · BMC Genomics

Yeasts and Rust Fungi StudiesFungal and yeast genetics research

Cited by 198

Systematic Phenotyping of a Large-Scale Candida glabrata Deletion Collection Reveals Novel Antifungal Tolerance Genes

Schwarzmüller, T., Ma, B., Hiller, E., Istel, F., Tscherner, M., Brunke, S., Ames, L., Firon, A., Green, B., Cabral, V., et al. (2014) · PLoS Pathogens

Antifungal resistance and susceptibilityFungal and yeast genetics research

Cited by 191

The human phylome

Huerta-Cepas, J., Dopazo, H., Dopazo, J., & Gabaldón, T. (2007) · Genome Biology

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 176

From Saccharomyces cerevisiae to Candida glabrata in a few easy steps: important adaptations for an opportunistic pathogen: Candida glabrata stress response

Roetzer, A., Gabaldón, T., & Schüller, C. (2011) · FEMS Microbiology Letters

Fungal and yeast genetics researchAntifungal resistance and susceptibility

Cited by 154

Origin and Early Evolution of the Eukaryotic Cell

Gabaldón, T. (2021) · Annual Review of Microbiology

Protist diversity and phylogenyOrigins and Evolution of Life

Cited by 121

Patterns of Genomic Variation in the Opportunistic Pathogen Candida glabrata Suggest the Existence of Mating and a Secondary Association with Humans

Carreté, L., Ksiezopolska, E., Pegueroles, C., Gómez-Molero, E., Saus, E., Iraola-Guzmán, S., Loska, D., Bader, O., Fairhead, C., & Gabaldón, T. (2018) · Current Biology

Fungal and yeast genetics researchYeasts and Rust Fungi Studies

Cited by 118

Timing the origin of eukaryotic cellular complexity with ancient duplications

Vosseberg, J., van Hooff, J. J. E., Marcet-Houben, M., van Vlimmeren, A., van Wijk, L. M., Gabaldón, T., & Snel, B. (2020) · Nature Ecology & Evolution

Protist diversity and phylogenyGenomics and Phylogenetic Studies

Cited by 110

Narrow mutational signatures drive acquisition of multidrug resistance in the fungal pathogen Candida glabrata

Ksiezopolska, E., Schikora-Tamarit, M. À., Beyer, R., Nunez-Rodriguez, J. C., Schüller, C., & Gabaldón, T. (2021) · Current Biology

Antifungal resistance and susceptibilityFungal and yeast genetics research

Cited by 107

Evolutionary genomics of yeast pathogens in the Saccharomycotina

Gabaldón, T., Naranjo-Ortíz, M. A., & Marcet-Houben, M. (2016) · FEMS Yeast Research

Fungal and yeast genetics researchYeasts and Rust Fungi Studies

Cited by 105

The birth of a deadly yeast: tracing the evolutionary emergence of virulence traits in Candida glabrata

Gabaldón, T., & Carreté, L. (2016) · FEMS Yeast Research

Fungal and yeast genetics researchYeasts and Rust Fungi Studies

Cited by 99

Candida pathogens induce protective mitochondria-associated type I interferon signalling and a damage-driven response in vaginal epithelial cells

Pekmezovic, M., Hovhannisyan, H., Gresnigt, M. S., Iracane, E., Oliveira-Pacheco, J., Siscar-Lewin, S., Seemann, E., Qualmann, B., Kalkreuter, T., Müller, S., et al. (2021) · Nature Microbiology

Antifungal resistance and susceptibilityinterferon and immune responses

Cited by 96

Advances and Applications in the Quest for Orthologs

Glover, N., Dessimoz, C., Ebersberger, I., Forslund, S. K., Gabaldón, T., Huerta-Cepas, J., Martin, M.-J., Muffato, M., Patricio, M., Pereira, C., et al. (2019) · Molecular Biology and Evolution

Genomics and Phylogenetic StudiesBioinformatics and Genomic Networks

Cited by 94