Tosatto, Silvio C E

Pfam: The protein families database in 2021

Mistry, J., Chuguransky, S., Williams, L., Qureshi, M., Salazar, G. A., Sonnhammer, E. L. L., Tosatto, S. C. E., Paladin, L., Raj, S., Richardson, L. J., et al. (2021) · Nucleic Acids Research

Genomics and Phylogenetic StudiesMachine Learning in Bioinformatics

Cited by 7,452

The Pfam protein families database in 2019

El-Gebali, S., Mistry, J., Bateman, A., Eddy, S. R., Luciani, A., Potter, S. C., Qureshi, M., Richardson, L. J., Salazar, G. A., Smart, A., et al. (2019) · Nucleic Acids Research

Genomics and Phylogenetic StudiesProtein Structure and Dynamics

Cited by 4,602

The InterPro protein families and domains database: 20 years on

Blum, M., Chang, H.-Y., Chuguransky, S., Grego, T., Kandasaamy, S., Mitchell, A., Nuka, G., Paysan-Lafosse, T., Qureshi, M., Raj, S., et al. (2021) · Nucleic Acids Research

Genomics and Phylogenetic StudiesMachine Learning in Bioinformatics

Cited by 2,231

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

Mitchell, A. L., Attwood, T. K., Babbitt, P. C., Blum, M., Bork, P., Bridge, A., Brown, S. D., Chang, H.-Y., El-Gebali, S., Fraser, M. I., et al. (2019) · Nucleic Acids Research

Genomics and Phylogenetic StudiesMachine Learning in Bioinformatics

Cited by 1,426

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Zhou, N., Jiang, Y., Bergquist, T. R., Lee, A. J., Kacsoh, B. Z., Crocker, A. W., Lewis, K. A., Georghiou, G., Nguyen, H. N., Hamid, M. N., et al. (2019) · Genome Biology

Bioinformatics and Genomic NetworksGenomics and Phylogenetic Studies

Cited by 452

Critical assessment of protein intrinsic disorder prediction

Necci, M., Piovesan, D., Predictors, C., Hoque, M. T., Walsh, I., Iqbal, S., Vendruscolo, M., Sormanni, P., Wang, C., Raimondi, D., et al. (2021) · Nature Methods

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 343

Intrinsic protein disorder and conditional folding in AlphaFoldDB

Piovesan, D., Monzon, A. M., & Tosatto, S. C. E. (2022) · Protein Science

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 160

PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins

Lazar, T., Martínez-Pérez, E., Quaglia, F., Hatos, A., Chemes, L. B., Iserte, J. A., Méndez, N. A., Garrone, N. A., Saldaño, T. E., Marchetti, J., et al. (2021) · Nucleic Acids Research

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 142

Critical assessment of protein intrinsic disorder prediction ( CAID ) ‐ Results of round 2

Conte, A. D., Mehdiabadi, M., Bouhraoua, A., Miguel Monzon, A., Tosatto, S. C. E., & Piovesan, D. (2023) · Proteins: Structure, Function, and Bioinformatics

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 86

PDBe-KB: collaboratively defining the biological context of structural data

PDBe-KB consortium, Varadi, M., Anyango, S., Armstrong, D., Berrisford, J., Choudhary, P., Deshpande, M., Nadzirin, N., Nair, S. S., Pravda, L., et al. (2022) · Nucleic Acids Research

Enzyme Structure and FunctionProtein Structure and Dynamics

Cited by 82

3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

Varadi, M., Nair, S., Sillitoe, I., Tauriello, G., Anyango, S., Bienert, S., Borges, C., Deshpande, M., Green, T., Hassabis, D., et al. (2022) · GigaScience

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 32

STRPsearch: fast detection of structured tandem repeat proteins

Mozaffari, S., Arrías, P. N., Clementel, D., Piovesan, D., Ferrari, C., Tosatto, S. C. E., & Monzon, A. M. (2024) · Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 12

STRPsearch: fast detection of structured tandem repeat proteins

Mozaffari, S., Arrías, P. N., Clementel, D., Piovesan, D., Ferrari, C., Tosatto, S. C. E., & Monzon, A. M. (2024) · Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 12

Pipeline for transferring annotations between proteins beyond globular domains

Martínez-Pérez, E., Pajkos, M., Tosatto, S. C. E., Gibson, T. J., Dosztanyi, Z., & Marino-Buslje, C. (2022) · Protein Science

Protein Structure and DynamicsGenomics and Phylogenetic Studies

Cited by 4

Pipeline for transferring annotations between proteins beyond globular domains

Martínez‐Pérez, E., Pajkos, M., Tosatto, S. C. E., Gibson, T. J., Dosztanyi, Z., & Marino‐Buslje, C. (2023) · Protein Science

Protein Structure and DynamicsGenomics and Phylogenetic Studies

Cited by 3

3D-Beacons: Decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

Varadi, M., Nair, S., Sillitoe, I., Tauriello, G., Anyango, S., Bienert, S., Borges, C., Deshpande, M., Green, T., Hassabis, D., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory)

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 2