Cited by 151

The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.

Ubiquitin-dependent sorting of integral membrane proteins for degradation in lysosomes

Piper, Robert C, Luzio, J Paul·2007·Current Opinion in Cell Biology

Abstract

The pathways that deliver newly synthesized proteins that reside in lysosomes are well understood on comparison with our knowledge of how integral membrane proteins are sorted and delivered to the lysosome for degradation. Many membrane proteins are sorted to lysosomes following ubiquitination, which provides a sorting signal that can operate for sorting at the TGN (trans-Golgi network), at the plasma membrane or at the endosome for delivery into lumenal vesicles. Candidate multicomponent machines that can potentially move ubiquitinated integral membrane cargo proteins have been identified, but much work is still required to ascertain which of these candidates directly recognize ubiquitinated cargo and what they do with cargo after recognition. In the case of the machinery required for sorting into the lumenal vesicles of endosomes, other functions have also been determined including a link between sorting and movement of endosomes along microtubules.

Overview

Integrity signals

Registry

Crossref · 10.1016/j.ceb.2007.07.002

Cites

2 of 2 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

This paper’s full text isn’t openly available, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 64

  1. Piper, 2001, Late endosomes: sorting and partitioning in multivesicular bodies, Traffic, 2, 612, 10.1034/j.1600-0854.2001.20904.x · DOI
  2. Luzio, 2003, Membrane dynamics and the biogenesis of lysosomes, Mol Membr Biol, 20, 141, 10.1080/0968768031000089546 · DOI
  3. Bright, 2005, Endocytic delivery to lysosomes mediated by concurrent fusion and kissing events in living cells, Curr Biol, 15, 360, 10.1016/j.cub.2005.01.049 · DOI
  4. Katzmann, 2002, Receptor downregulation and multivesicular-body sorting, Nat Rev Mol Cell Biol, 3, 893, 10.1038/nrm973 · DOI · Paper page
  5. Gruenberg, 2004, The biogenesis of multivesicular endosomes, Nat Rev Mol Cell Biol, 5, 317, 10.1038/nrm1360 · DOI
  6. Hurley, 2006, The ESCRT complexes: structure and mechanism of a membrane-trafficking network, Annu Rev Biophys Biomol Struct, 35, 277, 10.1146/annurev.biophys.35.040405.102126 · DOI · Paper page
  7. Kolling, 1994, The ABC-transporter Ste6 accumulates in the plasma membrane in a ubiquitinated form in endocytosis mutants, EMBO J, 13, 3261, 10.1002/j.1460-2075.1994.tb06627.x · DOI
  8. Hicke, 1996, Ubiquitination of a yeast plasma membrane receptor signals its ligand-stimulated endocytosis, Cell, 84, 277, 10.1016/S0092-8674(00)80982-4 · DOI · Paper page
  9. Helliwell, 2001, Components of a ubiquitin ligase complex specify polyubiquitination and intracellular trafficking of the general amino acid permease, J Cell Biol, 153, 649, 10.1083/jcb.153.4.649 · DOI
  10. Soetens, 2001, Ubiquitin is required for sorting to the vacuole of the yeast general amino acid permease, Gap1, J Biol Chem, 276, 43949, 10.1074/jbc.M102945200 · DOI
  11. Blondel, 2004, Direct sorting of the yeast uracil permease to the endosomal system is controlled by uracil binding and Rsp5p-dependent ubiquitylation, Mol Biol Cell, 15, 883, 10.1091/mbc.e03-04-0202 · DOI
  12. Reggiori, 2001, Sorting of proteins into multivesicular bodies: ubiquitin-dependent and -independent targeting, EMBO J, 20, 5176, 10.1093/emboj/20.18.5176 · DOI · Paper page
  13. Katzmann, 2001, Ubiquitin-dependent sorting into the multivesicular body pathway requires the function of a conserved endosomal protein sorting complex, ESCRT-I, Cell, 106, 145, 10.1016/S0092-8674(01)00434-2 · DOI
  14. Duncan, 2006, Lysine-63-linked ubiquitination is required for endolysosomal degradation of class I molecules, EMBO J, 25, 1635, 10.1038/sj.emboj.7601056 · DOI
  15. Geetha, 2005, Lysine 63 polyubiquitination of the nerve growth factor receptor TrkA directs internalization and signaling, Mol Cell, 20, 301, 10.1016/j.molcel.2005.09.014 · DOI
  16. Haglund, 2003, Multiple monoubiquitination of RTKs is sufficient for their endocytosis and degradation, Nat Cell Biol, 5, 461, 10.1038/ncb983 · DOI · Paper page
  17. Huang, 2006, Differential regulation of EGF receptor internalization and degradation by multiubiquitination within the kinase domain, Mol Cell, 21, 737, 10.1016/j.molcel.2006.02.018 · DOI · Paper page
  18. Shih, 2000, Monoubiquitin carries a novel internalization signal that is appended to activated receptors, EMBO J, 19, 187, 10.1093/emboj/19.2.187 · DOI
  19. Reggiori, 2002, A transmembrane ubiquitin ligase required to sort membrane proteins into multivesicular bodies, Nat Cell Biol, 4, 117, 10.1038/ncb743 · DOI
  20. Hurley, 2006, Ubiquitin-binding domains, Biochem J, 399, 361, 10.1042/BJ20061138 · DOI
  21. Mukhopadhyay, 2007, Proteasome-independent functions of ubiquitin in endocytosis and signaling, Science, 315, 201, 10.1126/science.1127085 · DOI · Paper page
  22. Woelk, 2006, Molecular mechanisms of coupled monoubiquitination, Nat Cell Biol, 8, 1246, 10.1038/ncb1484 · DOI
  23. Fallon, 2006, A regulated interaction with the UIM protein Eps15 implicates parkin in EGF receptor trafficking and PI(3)K-Akt signalling, Nat Cell Biol, 8, 834, 10.1038/ncb1441 · DOI · Paper page
  24. Hoeller, 2006, Regulation of ubiquitin-binding proteins by monoubiquitination, Nat Cell Biol, 8, 163, 10.1038/ncb1354 · DOI
  25. Yogosawa, 2006, Monoubiquitylation of GGA3 by hVPS18 regulates its ubiquitin-binding ability, Biochem Biophys Res Commun, 350, 82, 10.1016/j.bbrc.2006.09.013 · DOI
  26. Chen, 2003, Rapid Ca2+-dependent decrease of protein ubiquitination at synapses, Proc Natl Acad Sci USA, 100, 14908, 10.1073/pnas.2136625100 · DOI
  27. Amit, 2004, Tal, a Tsg101-specific E3 ubiquitin ligase, regulates receptor endocytosis and retrovirus budding, Genes Dev, 18, 1737, 10.1101/gad.294904 · DOI
  28. Traub, 2007, Decoding ubiquitin sorting signals for clathrin-dependent endocytosis by CLASPs, J Cell Sci, 120, 543, 10.1242/jcs.03385 · DOI
  29. Hawryluk, 2006, Epsin 1 is a polyubiquitin-selective clathrin-associated sorting protein, Traffic, 7, 262, 10.1111/j.1600-0854.2006.00383.x · DOI
  30. Barriere, 2006, Molecular basis of oligoubiquitin-dependent internalization of membrane proteins in Mammalian cells, Traffic, 7, 282, 10.1111/j.1600-0854.2006.00384.x · DOI
  31. Bache, 2003, STAM and Hrs are subunits of a multivalent ubiquitin-binding complex on early endosomes, J Biol Chem, 278, 12513, 10.1074/jbc.M210843200 · DOI · Paper page
  32. Lohi, 1998, EAST, an epidermal growth factor receptor- and Eps15-associated protein with Src homology 3 and tyrosine-based activation motif domains, J Biol Chem, 273, 21408, 10.1074/jbc.273.33.21408 · DOI
  33. Sorkina, 1999, Clathrin, adaptors and eps15 in endosomes containing activated epidermal growth factor receptors, J Cell Sci, 112, 317, 10.1242/jcs.112.3.317 · DOI · Paper page
  34. Pelham, 2004, Membrane traffic: GGAs sort ubiquitin, Curr Biol, 14, R357, 10.1016/j.cub.2004.04.027 · DOI
  35. Pak, 2006, Transport of LAPTM5 to lysosomes requires association with the ubiquitin ligase Nedd4, but not LAPTM5 ubiquitination, J Cell Biol, 175, 631, 10.1083/jcb.200603001 · DOI
  36. Bilodeau, 2002, The Vps27p Hse1p complex binds ubiquitin and mediates endosomal protein sorting, Nat Cell Biol, 4, 534, 10.1038/ncb815 · DOI
  37. Winter, 2006, Exploring the ESCRTing machinery in eukaryotes, Trends Plant Sci, 11, 115, 10.1016/j.tplants.2006.01.008 · DOI
  38. Puertollano, 2004, Interactions of GGA3 with the ubiquitin sorting machinery, Nat Cell Biol, 6, 244, 10.1038/ncb1106 · DOI · Paper page
  39. Katoh, 2006, Recruitment of clathrin onto endosomes by the Tom1–Tollip complex, Biochem Biophys Res Commun, 341, 143, 10.1016/j.bbrc.2005.12.156 · DOI
  40. Katoh, 2004, Tollip and Tom1 form a complex and recruit ubiquitin-conjugated proteins onto early endosomes, J Biol Chem, 279, 24435, 10.1074/jbc.M400059200 · DOI
  41. Yamakami, 2003, Tom1, a VHS domain-containing protein, interacts with tollip, ubiquitin, and clathrin, J Biol Chem, 278, 52865, 10.1074/jbc.M306740200 · DOI
  42. Franco, 2006, The adaptor protein Tom1L1 is a negative regulator of Src mitogenic signaling induced by growth factors, Mol Cell Biol, 26, 1932, 10.1128/MCB.26.5.1932-1947.2006 · DOI
  43. Brissoni, 2006, Intracellular trafficking of interleukin-1 receptor I requires Tollip, Curr Biol, 16, 2265, 10.1016/j.cub.2006.09.062 · DOI
  44. Sachse, 2002, Bilayered clathrin coats on endosomal vacuoles are involved in protein sorting toward lysosomes, Mol Biol Cell, 13, 1313, 10.1091/mbc.01-10-0525 · DOI · Paper page
  45. Raiborg, 2002, Hrs sorts ubiquitinated proteins into clathrin-coated microdomains of early endosomes, Nat Cell Biol, 4, 394, 10.1038/ncb791 · DOI · Paper page
  46. Boman, 2001, GGA proteins: new players in the sorting game, J Cell Sci, 114, 3413, 10.1242/jcs.114.19.3413 · DOI
  47. Alam, 2006, Structural basis for ubiquitin recognition by the human ESCRT-II EAP45 GLUE domain, Nat Struct Mol Biol, 13, 1029, 10.1038/nsmb1160 · DOI
  48. Hirano, 2006, Structural basis of ubiquitin recognition by mammalian Eap45 GLUE domain, Nat Struct Mol Biol, 13, 1031, 10.1038/nsmb1163 · DOI
  49. Doyotte, 2005, Depletion of TSG101 forms a mammalian “Class E” compartment: a multicisternal early endosome with multiple sorting defects, J Cell Sci, 118, 3003, 10.1242/jcs.02421 · DOI
  50. Razi, 2006, Distinct roles for Tsg101 and Hrs in multivesicular body formation and inward vesiculation, Mol Biol Cell, 17, 3469, 10.1091/mbc.e05-11-1054 · DOI
  51. Bowers, 2006, Degradation of endocytosed epidermal growth factor and virally ubiquitinated major histocompatibility complex class I is independent of mammalian ESCRTII, J Biol Chem, 281, 5094, 10.1074/jbc.M508632200 · DOI · Paper page
  52. Langelier, 2006, Human ESCRT-II complex and its role in human immunodeficiency virus type 1 release, J Virol, 80, 9465, 10.1128/JVI.01049-06 · DOI · Paper page
  53. Driskell, 2007, Dynein is required for receptor sorting and the morphogenesis of early endosomes, Nat Cell Biol, 9, 113, 10.1038/ncb1525 · DOI
  54. Rink, 2005, Rab conversion as a mechanism of progression from early to late endosomes, Cell, 122, 735, 10.1016/j.cell.2005.06.043 · DOI
  55. Jordens, 2001, The Rab7 effector protein RILP controls lysosomal transport by inducing the recruitment of dynein–dynactin motors, Curr Biol, 11, 1680, 10.1016/S0960-9822(01)00531-0 · DOI · Paper page
  56. Cantalupo, 2001, Rab-interacting lysosomal protein (RILP): the Rab7 effector required for transport to lysosomes, EMBO J, 20, 683, 10.1093/emboj/20.4.683 · DOI · Paper page
  57. Progida, 2006, RILP interacts with the VPS22 component of the ESCRT-II complex, Biochem Biophys Res Commun, 347, 1074, 10.1016/j.bbrc.2006.07.007 · DOI
  58. Wang, 2006, RILP interacts with VPS22 and VPS36 of ESCRT-II and regulates their membrane recruitment, Biochem Biophys Res Commun, 350, 413, 10.1016/j.bbrc.2006.09.064 · DOI
  59. Johansson, 2005, The oxysterol-binding protein homologue ORP1L interacts with Rab7 and alters functional properties of late endocytic compartments, Mol Biol Cell, 16, 5480, 10.1091/mbc.e05-03-0189 · DOI
  60. Irion, 2007, Bicoid RNA localization requires specific binding of an endosomal sorting complex, Nature, 445, 554, 10.1038/nature05503 · DOI
  61. Jin, 2005, The fission yeast homolog of the human transcription factor EAP30 blocks meiotic spindle pole body amplification, Dev Cell, 9, 63, 10.1016/j.devcel.2005.04.016 · DOI
  62. Hoepfner, 2005, Modulation of receptor recycling and degradation by the endosomal kinesin KIF16B, Cell, 121, 437, 10.1016/j.cell.2005.02.017 · DOI
  63. Harrison, 2003, Phagosomes fuse with late endosomes and/or lysosomes by extension of membrane protrusions along microtubules: role of Rab7 and RILP, Mol Cell Biol, 23, 6494, 10.1128/MCB.23.18.6494-6506.2003 · DOI
  64. Bache, 2006, The ESCRT-III subunit hVps24 is required for degradation but not silencing of the epidermal growth factor receptor, Mol Biol Cell, 17, 2513, 10.1091/mbc.e05-10-0915 · DOI

Cited by

Sorted by citations

Metadata

Authors
Piper, R. C., & Luzio, J. P.
Venue
Current Opinion in Cell Biology
Publisher
Elsevier BV
Published
2007-08
Volume
19
Issue
4
Pages
459-465
ISSN
0955-0674
Cited by
151
References
2
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review