The DOI matches its Crossref record; 10 of the 10 references it cites were found in a registry or an index.
The Autophagy-Initiating Kinase ULK1 Controls RIPK1-Mediated Cell Death
Abstract
Autophagy, apoptosis, and necroptosis are stress responses governing the ultimate fate of a cell. However, the crosstalk between these cellular stress responses is not entirely understood. Especially, it is not clear whether the autophagy-initiating kinase ULK1 and the cell-death-regulating kinase RIPK1 are involved in this potential crosstalk. Here, we identify RIPK1 as a substrate of ULK1. ULK1-dependent phosphorylation of RIPK1 reduces complex IIb/necrosome assembly and tumor necrosis factor (TNF)-induced cell death, whereas deprivation of ULK1 enhances TNF-induced cell death. We observe that ULK1 phosphorylates multiple sites of RIPK1, but it appears that especially phosphorylation of S357 within the intermediate domain of RIPK1 mediates this cell-death-inhibiting effect. We propose that ULK1 is a regulator of RIPK1-mediated cell death.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“phosphorylation of EIF4EBP1 at Thr37 and Thr46 primes the protein for phosphorylation at Ser65”
From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [734]
In the citing paper
“rapamycin strongly reduces RPS6KB1 phosphorylation, whereas its effect on EIF4EBP1 is more variable.”
From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [734]
In the citing paper
“although directly phosphorylated by MTORC1, the modifications at Thr37 and Thr46 are only partially sensitive to serum and rapamycin [734].”
From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [734]
Citations
Cites
Chemical inhibitor of nonapoptotic cell death with therapeutic potential for ischemic brain injury
Degterev, A., Huang, Z., Boyce, M., Li, Y., Jagtap, P., Mizushima, N., Cuny, G. D., Mitchison, T. J., Moskowitz, M. A., & Yuan, J. (2005) · Nature Chemical Biology · doi:10.1038/nchembio711 · Cited by 3,068
Receptor Interacting Protein Kinase-3 Determines Cellular Necrotic Response to TNF-α
He, S., Wang, L., Miao, L., Wang, T., Du, F., Zhao, L., & Wang, X. (2009) · Cell · doi:10.1016/j.cell.2009.05.021 · Cited by 2,214
Self-citationRIP3 mediates the embryonic lethality of caspase-8-deficient mice
Kaiser, W. J., Upton, J. W., Long, A. B., Livingston-Rosanoff, D., Daley-Bauer, L. P., Hakem, R., Caspary, T., & Mocarski, E. S. (2011) · Nature · doi:10.1038/nature09857 · Cited by 1,057
Regulation of tumour necrosis factor signalling: live or let die
Brenner, D., Blaser, H., & Mak, T. W. (2015) · Nature Reviews Immunology · doi:10.1038/nri3834 · Cited by 998
Initiation and execution mechanisms of necroptosis: an overview
Grootjans, S., Vanden Berghe, T., & Vandenabeele, P. (2017) · Cell Death & Differentiation · doi:10.1038/cdd.2017.65 · Cited by 566
RIPK1 maintains epithelial homeostasis by inhibiting apoptosis and necroptosis
Dannappel, M., Vlantis, K., Kumari, S., Polykratis, A., Kim, C., Wachsmuth, L., Eftychi, C., Lin, J., Corona, T., Hermance, N., et al. (2014) · Nature · doi:10.1038/nature13608 · Cited by 534
Caspase 8 inhibits programmed necrosis by processing CYLD
O’Donnell, M. A., Perez-Jimenez, E., Oberst, A., Ng, A., Massoumi, R., Xavier, R., Green, D. R., & Ting, A. T. (2011) · Nature Cell Biology · doi:10.1038/ncb2362 · Cited by 494
RIPK1 inhibits ZBP1-driven necroptosis during development
Newton, K., Wickliffe, K. E., Maltzman, A., Dugger, D. L., Strasser, A., Pham, V. C., Lill, J. R., Roose-Girma, M., Warming, S., Solon, M., et al. (2016) · Nature · doi:10.1038/nature20559 · Cited by 390
RIP1 suppresses innate immune necrotic as well as apoptotic cell death during mammalian parturition
Kaiser, W. J., Daley-Bauer, L. P., Thapa, R. J., Mandal, P., Berger, S. B., Huang, C., Sundararajan, A., Guo, H., Roback, L., Speck, S. H., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1401857111 · Cited by 291
Ulk1-mediated phosphorylation of AMPK constitutes a negative regulatory feedback loop
Löffler, A. S., Alers, S., Dieterle, A. M., Keppeler, H., Franz-Wachtel, M., Kundu, M., Campbell, D. G., Wesselborg, S., Alessi, D. R., & Stork, B. (2011) · Autophagy · doi:10.4161/auto.7.7.15451 · Cited by 258
Self-citation
Flagged first, then by citations
Research works printed but not linked: 60
- Aaes, 2016, Vaccination with Necroptotic Cancer Cells Induces Efficient Anti-tumor Immunity, Cell Rep., 15, 274, 10.1016/j.celrep.2016.03.037 · DOI
- Annibaldi, 2018, Checkpoints in TNF-Induced Cell Death: Implications in Inflammation and Cancer, Trends Mol. Med., 24, 49, 10.1016/j.molmed.2017.11.002 · DOI
- Artal-Sanz, 2005, Proteolytic mechanisms in necrotic cell death and neurodegeneration, FEBS Lett., 579, 3287, 10.1016/j.febslet.2005.03.052 · DOI
- Biton, 2011, NEMO and RIP1 control cell fate in response to extensive DNA damage via TNF-α feedforward signaling, Cell, 145, 92, 10.1016/j.cell.2011.02.023 · DOI · Paper page
- Cho, 2009, Phosphorylation-driven assembly of the RIP1-RIP3 complex regulates programmed necrosis and virus-induced inflammation, Cell, 137, 1112, 10.1016/j.cell.2009.05.037 · DOI · Paper page
- Christofferson, 2010, Necroptosis as an alternative form of programmed cell death, Curr. Opin. Cell Biol., 22, 263, 10.1016/j.ceb.2009.12.003 · DOI
- Cox, 2008, MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification, Nat. Biotechnol., 26, 1367, 10.1038/nbt.1511 · DOI · Paper page
- de Almagro, 2017, Coordinated ubiquitination and phosphorylation of RIP1 regulates necroptotic cell death, Cell Death Differ., 24, 26, 10.1038/cdd.2016.78 · DOI
- Degterev, 2008, Identification of RIP1 kinase as a specific cellular target of necrostatins, Nat. Chem. Biol., 4, 313, 10.1038/nchembio.83 · DOI · Paper page
- Deutsch, 2020, The ProteomeXchange consortium in 2020: enabling ‘big data’ approaches in proteomics, Nucleic Acids Res., 48, D1145
- Dillon, 2014, RIPK1 blocks early postnatal lethality mediated by caspase-8 and RIPK3, Cell, 157, 1189, 10.1016/j.cell.2014.04.018 · DOI · Paper page
- Dondelinger, 2015, NF-κB-Independent Role of IKKα/IKKβ in Preventing RIPK1 Kinase-Dependent Apoptotic and Necroptotic Cell Death during TNF Signaling, Mol. Cell, 60, 63, 10.1016/j.molcel.2015.07.032 · DOI · Paper page
- Dondelinger, 2017, MK2 phosphorylation of RIPK1 regulates TNF-mediated cell death, Nat. Cell Biol., 19, 1237, 10.1038/ncb3608 · DOI
- Ea, 2006, Activation of IKK by TNFalpha requires site-specific ubiquitination of RIP1 and polyubiquitin binding by NEMO, Mol. Cell, 22, 245, 10.1016/j.molcel.2006.03.026 · DOI
- Egan, 2015, Small Molecule Inhibition of the Autophagy Kinase ULK1 and Identification of ULK1 Substrates, Mol. Cell, 59, 285, 10.1016/j.molcel.2015.05.031 · DOI · Paper page
- Feng, 2007, Cleavage of RIP3 inactivates its caspase-independent apoptosis pathway by removal of kinase domain, Cell. Signal., 19, 2056, 10.1016/j.cellsig.2007.05.016 · DOI
- Geng, 2017, Regulation of RIPK1 activation by TAK1-mediated phosphorylation dictates apoptosis and necroptosis, Nat. Commun., 8, 359, 10.1038/s41467-017-00406-w · DOI · Paper page
- Goodall, 2016, The Autophagy Machinery Controls Cell Death Switching between Apoptosis and Necroptosis, Dev. Cell, 37, 337, 10.1016/j.devcel.2016.04.018 · DOI · Paper page
- Guo, 2016, TAK1 regulates caspase 8 activation and necroptotic signaling via multiple cell death checkpoints, Cell Death Dis., 7, e2381, 10.1038/cddis.2016.294 · DOI
- Harris, 2015, RIP3 Regulates Autophagy and Promotes Coxsackievirus B3 Infection of Intestinal Epithelial Cells, Cell Host Microbe, 18, 221, 10.1016/j.chom.2015.07.007 · DOI
- Hieke, 2015, Expression of a ULK1/2 binding-deficient ATG13 variant can partially restore autophagic activity in ATG13-deficient cells, Autophagy, 11, 1471, 10.1080/15548627.2015.1068488 · DOI
- Jaco, 2017, MK2 Phosphorylates RIPK1 to Prevent TNF-Induced Cell Death, Mol. Cell, 66, 698, 10.1016/j.molcel.2017.05.003 · DOI
- Joo, 2011, Hsp90-Cdc37 chaperone complex regulates Ulk1- and Atg13-mediated mitophagy, Mol. Cell, 43, 572, 10.1016/j.molcel.2011.06.018 · DOI · Paper page
- Joo, 2016, The Noncanonical Role of ULK/ATG1 in ER-to-Golgi Trafficking Is Essential for Cellular Homeostasis, Mol. Cell, 62, 491, 10.1016/j.molcel.2016.04.020 · DOI · Paper page
- Jung, 2009, ULK-Atg13-FIP200 complexes mediate mTOR signaling to the autophagy machinery, Mol. Biol. Cell, 20, 1992, 10.1091/mbc.e08-12-1249 · DOI · Paper page
- Kearney, 2014, RIPK1 can function as an inhibitor rather than an initiator of RIPK3-dependent necroptosis, FEBS J., 281, 4921, 10.1111/febs.13034 · DOI
- Konno, 2013, Cyclic dinucleotides trigger ULK1 (ATG1) phosphorylation of STING to prevent sustained innate immune signaling, Cell, 155, 688, 10.1016/j.cell.2013.09.049 · DOI · Paper page
- Levine, 2008, Autophagy in the pathogenesis of disease, Cell, 132, 27, 10.1016/j.cell.2007.12.018 · DOI · Paper page
- Lim, 2015, Proteotoxic stress induces phosphorylation of p62/SQSTM1 by ULK1 to regulate selective autophagic clearance of protein aggregates, PLoS Genet., 11, e1004987, 10.1371/journal.pgen.1004987 · DOI
- Lin, 1999, Cleavage of the death domain kinase RIP by caspase-8 prompts TNF-induced apoptosis, Genes Dev., 13, 2514, 10.1101/gad.13.19.2514 · DOI
- Lu, 2016, Mitochondrial Protein PGAM5 Regulates Mitophagic Protection against Cell Necroptosis, PLoS One, 11, e0147792, 10.1371/journal.pone.0147792 · DOI
- Mandal, 2014, RIP3 induces apoptosis independent of pronecrotic kinase activity, Mol. Cell, 56, 481, 10.1016/j.molcel.2014.10.021 · DOI
- Matsuzawa, 2015, RIPK3 regulates p62-LC3 complex formation via the caspase-8-dependent cleavage of p62, Biochem. Biophys. Res. Commun., 456, 298, 10.1016/j.bbrc.2014.11.075 · DOI
- Matsuzawa-Ishimoto, 2017, Autophagy protein ATG16L1 prevents necroptosis in the intestinal epithelium, J. Exp. Med., 214, 3687, 10.1084/jem.20170558 · DOI
- Menon, 2017, p38MAPK/MK2-dependent phosphorylation controls cytotoxic RIPK1 signalling in inflammation and infection, Nat. Cell Biol., 19, 1248, 10.1038/ncb3614 · DOI
- Mizushima, 2011, Autophagy: renovation of cells and tissues, Cell, 147, 728, 10.1016/j.cell.2011.10.026 · DOI
- Mohideen, 2017, Quantitative Phospho-proteomic Analysis of TNFα/NFκB Signaling Reveals a Role for RIPK1 Phosphorylation in Suppressing Necrotic Cell Death, Mol. Cell. Proteomics, 16, 1200, 10.1074/mcp.M117.068189 · DOI
- Ori, 2013, Essential roles of K63-linked polyubiquitin-binding proteins TAB2 and TAB3 in B cell activation via MAPKs, J. Immunol., 190, 4037, 10.4049/jimmunol.1300173 · DOI
- Orozco, 2014, RIPK1 both positively and negatively regulates RIPK3 oligomerization and necroptosis, Cell Death Differ., 21, 1511, 10.1038/cdd.2014.76 · DOI · Paper page
- Papinski, 2014, Early steps in autophagy depend on direct phosphorylation of Atg9 by the Atg1 kinase, Mol. Cell, 53, 471, 10.1016/j.molcel.2013.12.011 · DOI
- Park, 2016, The ULK1 complex mediates MTORC1 signaling to the autophagy initiation machinery via binding and phosphorylating ATG14, Autophagy, 12, 547, 10.1080/15548627.2016.1140293 · DOI · Paper page
- Perez-Riverol, 2019, The PRIDE database and related tools and resources in 2019: improving support for quantification data, Nucleic Acids Res., 47, D442, 10.1093/nar/gky1106 · DOI
- Petherick, 2015, Pharmacological inhibition of ULK1 kinase blocks mammalian target of rapamycin (mTOR)-dependent autophagy, J. Biol. Chem., 290, 11376, 10.1074/jbc.C114.627778 · DOI
- Polykratis, 2014, Cutting edge: RIPK1 Kinase inactive mice are viable and protected from TNF-induced necroptosis in vivo, J. Immunol., 193, 1539, 10.4049/jimmunol.1400590 · DOI
- Poschmann, 2014, High-fat diet induced isoform changes of the Parkinson’s disease protein DJ-1, J. Proteome Res., 13, 2339, 10.1021/pr401157k · DOI
- Rahighi, 2009, Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation, Cell, 136, 1098, 10.1016/j.cell.2009.03.007 · DOI
- Rajesh, 2011, Binding to syntenin-1 protein defines a new mode of ubiquitin-based interactions regulated by phosphorylation, J. Biol. Chem., 286, 39606, 10.1074/jbc.M111.262402 · DOI · Paper page
- Rickard, 2014, RIPK1 regulates RIPK3-MLKL-driven systemic inflammation and emergency hematopoiesis, Cell, 157, 1175, 10.1016/j.cell.2014.04.019 · DOI
- Russell, 2013, ULK1 induces autophagy by phosphorylating Beclin-1 and activating VPS34 lipid kinase, Nat. Cell Biol., 15, 741, 10.1038/ncb2757 · DOI · Paper page
- Saleiro, 2015, Central role of ULK1 in type I interferon signaling, Cell Rep., 11, 605, 10.1016/j.celrep.2015.03.056 · DOI · Paper page
- Sun, 2012, Mixed lineage kinase domain-like protein mediates necrosis signaling downstream of RIP3 kinase, Cell, 148, 213, 10.1016/j.cell.2011.11.031 · DOI · Paper page
- Trichonas, 2010, Receptor interacting protein kinases mediate retinal detachment-induced photoreceptor necrosis and compensate for inhibition of apoptosis, Proc. Natl. Acad. Sci. USA, 107, 21695, 10.1073/pnas.1009179107 · DOI
- Wang, 2014, Direct activation of RIP3/MLKL-dependent necrosis by herpes simplex virus 1 (HSV-1) protein ICP6 triggers host antiviral defense, Proc. Natl. Acad. Sci. USA, 111, 15438, 10.1073/pnas.1412767111 · DOI
- Weinlich, 2014, The two faces of receptor interacting protein kinase-1, Mol. Cell, 56, 469, 10.1016/j.molcel.2014.11.001 · DOI
- Wesselborg, 2015, Autophagy signal transduction by ATG proteins: from hierarchies to networks, Cell. Mol. Life Sci., 72, 4721, 10.1007/s00018-015-2034-8 · DOI
- Wu, 2014, ULK1 translocates to mitochondria and phosphorylates FUNDC1 to regulate mitophagy, EMBO Rep., 15, 566, 10.1002/embr.201438501 · DOI · Paper page
- Yang, 2010, Eaten alive: a history of macroautophagy, Nat. Cell Biol., 12, 814, 10.1038/ncb0910-814 · DOI
- Yonekawa, 2015, RIP1 negatively regulates basal autophagic flux through TFEB to control sensitivity to apoptosis, EMBO Rep., 16, 700, 10.15252/embr.201439496 · DOI
- Zhang, 2009, RIP3, an energy metabolism regulator that switches TNF-induced cell death from apoptosis to necrosis, Science, 325, 332, 10.1126/science.1172308 · DOI · Paper page
- Zhou, 2017, Regulation of mATG9 trafficking by Src- and ULK1-mediated phosphorylation in basal and starvation-induced autophagy, Cell Res., 27, 184, 10.1038/cr.2016.146 · DOI
Cited by
Sorted by citations
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1
Klionsky, D. J., Abdel-Aziz, A. K., Abdelfatah, S., Abdellatif, M., Abdoli, A., Abel, S., Abeliovich, H., Abildgaard, M. H., Abudu, Y. P., Acevedo-Arozena, A., et al. (2021) · Autophagy · doi:10.1080/15548627.2020.1797280 · Cited by 2,897
Self-citationThe pleiotropic roles of autophagy in Alzheimer’s disease: From pathophysiology to therapy
Festa, B. P., Barbosa, A. D., Rob, M., & Rubinsztein, D. C. (2021) · Current Opinion in Pharmacology · doi:10.1016/j.coph.2021.07.011 · Cited by 41
Metadata
- Authors
- Wu, W., Wang, X., Berleth, N., Deitersen, J., Wallot-Hieke, N., Böhler, P., Schlütermann, D., Stuhldreier, F., Cox, J., Schmitz, K., Seggewiß, S., Peter, C., Kasof, G., Stefanski, A., Stühler, K., Tschapek, A., Gödecke, A., & Stork, B.
- Venue
- Cell Reports
- Publisher
- Elsevier BV
- Published
- 2020-04
- Volume
- 31
- Issue
- 3
- Pages
- 107547
- ISSN
- 2211-1247
- Cited by
- 72
- References
- 10
- Language
- en
- Licence
- Funders
- Deutsche Forschungsgemeinschaft
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review