The DOI matches its Crossref record; 10 of the 10 references it cites were found in a registry or an index.
Ancient Wolf Genome Reveals an Early Divergence of Domestic Dog Ancestors and Admixture into High-Latitude Breeds
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Large-scale population replacement occurred in dogs, wolves, horses, pigs and crops such as potato.
“Large-scale population replacement occurred in dogs 278 , wolves 196,279,280 , horses 148,281 , pigs 282 and crops such as potato 283 .”
From Ancient DNA analysis (2021) · cites this paper as [196]
In Results and Discussion (page not specified), the paper reports mitochondrial DNA evidence for a Holocene replacement of European gray wolves. It also proposes, as a hypothesis, that a distinct wolf population ancestral to dogs was subsequently replaced. This supports the wolf-related part of the citing sentence, but not its unqualified assertion that large-scale replacement occurred; the paper does not address replacement in horses, pigs, or potato. (LLM, conf=0.84)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041
IntCal13 and Marine13 radiocarbon age calibration curves 0–50,000 years cal BP
Reimer, P. J., Bard, E., Bayliss, A., Beck, J. W., Blackwell, P. G., Ramsey, C. B., Buck, C. E., Cheng, H., Edwards, R. L., Friedrich, M., et al. (2013) · Radiocarbon · doi:10.2458/azu_js_rc.55.16947 · Cited by 14,591
Population Structure and Eigenanalysis
Patterson, N., Price, A. L., & Reich, D. (2006) · PLoS Genetics · doi:10.1371/journal.pgen.0020190 · Cited by 5,280
Ancient Admixture in Human History
Patterson, N., Moorjani, P., Luo, Y., Mallick, S., Rohland, N., Zhan, Y., Genschoreck, T., Webster, T., & Reich, D. (2012) · Genetics · doi:10.1534/genetics.112.145037 · Cited by 2,848
Genome sequence, comparative analysis and haplotype structure of the domestic dog
members, B. S. P., Lindblad-Toh, K., Wade, C. M., Mikkelsen, T. S., Karlsson, E. K., Jaffe, D. B., Kamal, M., Clamp, M., Chang, J. L., Kulbokas, E. J., et al. (2005) · Nature · doi:10.1038/nature04338 · Cited by 2,568
Reconstructing Indian population history
Reich, D., Thangaraj, K., Patterson, N., Price, A. L., & Singh, L. (2009) · Nature · doi:10.1038/nature08365 · Cited by 1,674
Ancient human genomes suggest three ancestral populations for present-day Europeans
Lazaridis, I., Patterson, N., Mittnik, A., Renaud, G., Mallick, S., Kirsanow, K., Sudmant, P. H., Schraiber, J. G., Castellano, S., Lipson, M., et al. (2014) · Nature · doi:10.1038/nature13673 · Cited by 1,357
Genome sequencing highlights the dynamic early history of dogs
Freedman, A. H., Gronau, I., Schweizer, R. M., Ortega-Del Vecchyo, D., Han, E., Silva, P. M., Galaverni, M., Fan, Z., Marx, P., Lorente-Galdos, B., et al. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004016 · Cited by 624
Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal
Skoglund, P., Northoff, B. H., Shunkov, M. V., Derevianko, A. P., Pääbo, S., Krause, J., & Jakobsson, M. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1318934111 · Cited by 499
The genomics of selection in dogs and the parallel evolution between dogs and humans
Wang, G.-D., Zhai, W., Yang, H.-C., Fan, R.-X., Cao, X., Zhong, L., Wang, L., Liu, F., Wu, H., Cheng, L.-G., et al. (2013) · Nature Communications · doi:10.1038/ncomms2814 · Cited by 323
Flagged first, then by citations
Research works printed but not linked: 26
- Vilà, 1997, Multiple and ancient origins of the domestic dog, Science, 276, 1687, 10.1126/science.276.5319.1687 · DOI · Paper page
- Vila, 1999, Mitochondrial DNA phylogeography and population history of the grey wolf canis lupus, Mol. Ecol., 8, 2089, 10.1046/j.1365-294x.1999.00825.x · DOI
- Sablin, 2002, The earliest ice age dogs: evidence from Eliseevichi 11, Curr. Anthropol., 43, 795, 10.1086/344372 · DOI
- Savolainen, 2002, Genetic evidence for an East Asian origin of domestic dogs, Science, 298, 1610, 10.1126/science.1073906 · DOI · Paper page
- Germonpre, 2009, Fossil dogs and wolves from Palaeolithic sites in Belgium, the Ukraine and Russia: osteometry, ancient DNA and stable isotopes, J. Archaeol. Sci., 36, 473, 10.1016/j.jas.2008.09.033 · DOI
- Pang, 2009, mtDNA data indicate a single origin for dogs south of Yangtze River, less than 16,300 years ago, from numerous wolves, Mol. Biol. Evol., 26, 2849, 10.1093/molbev/msp195 · DOI
- Boyko, 2009, Complex population structure in African village dogs and its implications for inferring dog domestication history, Proc. Natl. Acad. Sci. USA, 106, 13903, 10.1073/pnas.0902129106 · DOI · Paper page
- Ovodov, 2011, A 33,000-year-old incipient dog from the Altai Mountains of Siberia: evidence of the earliest domestication disrupted by the Last Glacial Maximum, PLoS ONE, 6, e22821, 10.1371/journal.pone.0022821 · DOI
- Druzhkova, 2013, Ancient DNA analysis affirms the canid from Altai as a primitive dog, PLoS ONE, 8, e57754, 10.1371/journal.pone.0057754 · DOI
- Vonholdt, 2010, Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication, Nature, 464, 898, 10.1038/nature08837 · DOI
- Larson, 2012, Rethinking dog domestication by integrating genetics, archeology, and biogeography, Proc. Natl. Acad. Sci. USA, 109, 8878, 10.1073/pnas.1203005109 · DOI · Paper page
- Axelsson, 2013, The genomic signature of dog domestication reveals adaptation to a starch-rich diet, Nature, 495, 360, 10.1038/nature11837 · DOI · Paper page
- Thalmann, 2013, Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs, Science, 342, 871, 10.1126/science.1243650 · DOI
- Germonpré, 2015, Large canids at the Gravettian Předmostí site, the Czech Republic: the mandible, Quat. Int., 359-360, 261, 10.1016/j.quaint.2014.07.012 · DOI
- Larson, 2014, How much is that in dog years? The advent of canine population genomics, PLoS Genet., 10, e1004093, 10.1371/journal.pgen.1004093 · DOI
- Gray, 2009, Linkage disequilibrium and demographic history of wild and domestic canids, Genetics, 181, 1493, 10.1534/genetics.108.098830 · DOI
- Leonard, 2007, Megafaunal extinctions and the disappearance of a specialized wolf ecomorph, Curr. Biol., 17, 1146, 10.1016/j.cub.2007.05.072 · DOI
- Pilot, 2010, Phylogeographic history of grey wolves in Europe, BMC Evol. Biol., 10, 104, 10.1186/1471-2148-10-104 · DOI · Paper page
- Briggs, 2010, Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA, Nucleic Acids Res., 38, e87, 10.1093/nar/gkp1163 · DOI · Paper page
- Briggs, 2009, Targeted retrieval and analysis of five Neandertal mtDNA genomes, Science, 325, 318, 10.1126/science.1174462 · DOI
- Green, 2010, A draft sequence of the Neandertal genome, Science, 328, 710, 10.1126/science.1188021 · DOI · Paper page
- Li, 2011, Inference of human population history from individual whole-genome sequences, Nature, 475, 493, 10.1038/nature10231 · DOI · Paper page
- Skoglund, 2011, Estimation of population divergence times from non-overlapping genomic sequences: examples from dogs and wolves, Mol. Biol. Evol., 28, 1505, 10.1093/molbev/msq342 · DOI
- Vaysse, 2011, Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping, PLoS Genet., 7, e1002316, 10.1371/journal.pgen.1002316 · DOI
- vonHoldt, 2011, A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids, Genome Res., 21, 1294, 10.1101/gr.116301.110 · DOI
- Leonard, 2002, Ancient DNA evidence for Old World origin of New World dogs, Science, 298, 1613, 10.1126/science.1076980 · DOI
Cited by
Sorted by citations
Orlando, L., Allaby, R., Skoglund, P., Der Sarkissian, C., Stockhammer, P. W., Ávila-Arcos, M. C., Fu, Q., Krause, J., Willerslev, E., Stone, A. C., et al. (2021) · Nature Reviews Methods Primers · doi:10.1038/s43586-020-00011-0 · Cited by 411
Self-citationOrigins and genetic legacy of prehistoric dogs
Bergström, A., Frantz, L., Schmidt, R., Ersmark, E., Lebrasseur, O., Girdland-Flink, L., Lin, A. T., Storå, J., Sjögren, K.-G., Anthony, D., et al. (2020) · Science · doi:10.1126/science.aba9572 · Cited by 297
Worldwide patterns of genomic variation and admixture in gray wolves
Fan, Z., Silva, P., Gronau, I., Wang, S., Armero, A. S., Schweizer, R. M., Ramirez, O., Pollinger, J., Galaverni, M., Ortega Del-Vecchyo, D., et al. (2016) · Genome Research · doi:10.1101/gr.197517.115 · Cited by 209
Velsko, I. M., Fellows Yates, J. A., Aron, F., Hagan, R. W., Frantz, L. A. F., Loe, L., Martinez, J. B. R., Chaves, E., Gosden, C., Larson, G., et al. (2019) · Microbiome · doi:10.1186/s40168-019-0717-3 · Cited by 170
Pendleton, A. L., Shen, F., Taravella, A. M., Emery, S., Veeramah, K. R., Boyko, A. R., & Kidd, J. M. (2018) · BMC Biology · doi:10.1186/s12915-018-0535-2 · Cited by 156
Demographically-based evaluation of genomic regions under selection in domestic dogs
Freedman, A. H., Schweizer, R. M., Ortega-Del Vecchyo, D., Han, E., Davis, B. W., Gronau, I., Silva, P. M., Galaverni, M., Fan, Z., Marx, P., et al. (2016) · PLoS Genetics · doi:10.1371/journal.pgen.1005851 · Cited by 104
Perception of dynamic facial expressions of emotion between dogs and humans
Correia-Caeiro, C., Guo, K., & Mills, D. S. (2020) · Animal Cognition · doi:10.1007/s10071-020-01348-5 · Cited by 55
Evolutionary History, Selective Sweeps, and Deleterious Variation in the Dog
Freedman, A. H., Lohmueller, K. E., & Wayne, R. K. (2016) · Annual Review of Ecology, Evolution, and Systematics · doi:10.1146/annurev-ecolsys-121415-032155 · Cited by 50
Negro, J. J., Carmen Blázquez, M., & Galván, I. (2017) · Frontiers in Zoology · doi:10.1186/s12983-017-0243-8 · Cited by 42
Mooney, J. A., Yohannes, A., & Lohmueller, K. E. (2020) · doi:10.1101/2020.11.16.385443 · Cited by 1
Metadata
- Authors
- Skoglund, P., Ersmark, E., Palkopoulou, E., & Dalén, L.
- Venue
- Current Biology
- Publisher
- Elsevier BV
- Published
- 2015-06
- Volume
- 25
- Issue
- 11
- Pages
- 1515-1519
- ISSN
- 0960-9822
- Cited by
- 310
- References
- 10
- Language
- en
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review