Evolutionary History, Selective Sweeps, and Deleterious Variation in the Dog

RNA-Seq: a revolutionary tool for transcriptomics

Wang, Z., Gerstein, M., & Snyder, M. (2009) · Nature Reviews Genetics · doi:10.1038/nrg2484 · Cited by 13,174 · see citing works

THE GENETICAL STRUCTURE OF POPULATIONS

Wright, S. (1949) · Annals of Eugenics · doi:10.1111/j.1469-1809.1949.tb02451.x · Cited by 6,729 · see citing works

The hitch-hiking effect of a favourable gene

Smith, J. M., & Haigh, J. (1974) · Genetical Research · doi:10.1017/s0016672300014634 · Cited by 3,415 · see citing works

INBREEDING DEPRESSION AND ITS EVOLUTIONARY CONSEQUENCES

Charlesworth, D., & Charlesworth, B. (1987) · Annual Review of Ecology and Systematics · doi:10.1146/annurev.es.18.110187.001321 · Cited by 3,264 · see citing works

Genome-Wide Mapping of in Vivo Protein-DNA Interactions

Johnson, D. S., Mortazavi, A., Myers, R. M., & Wold, B. (2007) · Science · doi:10.1126/science.1141319 · Cited by 2,927 · see citing works

Evolution at Two Levels in Humans and Chimpanzees: Their macromolecules are so alike that regulatory mutations may account for their biological differences

King, M.-C., & Wilson, A. C. (1975) · Science · doi:10.1126/science.1090005 · Cited by 2,815 · see citing works

Genome sequence, comparative analysis and haplotype structure of the domestic dog

members, B. S. P., Lindblad-Toh, K., Wade, C. M., Mikkelsen, T. S., Karlsson, E. K., Jaffe, D. B., Kamal, M., Clamp, M., Chang, J. L., Kulbokas, E. J., et al. (2005) · Nature · doi:10.1038/nature04338 · Cited by 2,568 · see citing works

A high-coverage genome sequence from an archaic denisovan individual

Meyer, M., Kircher, M., Gansauge, M.-T., Li, H., Racimo, F., Mallick, S., Schraiber, J. G., Jay, F., Prüfer, K., de Filippo, C., et al. (2012) · Science · doi:10.1126/science.1224344 · Cited by 1,967 · see citing works

Defining the role of common variation in the genomic and biological architecture of adult human height

The Electronic Medical Records and Genomics (eMERGE) Consortium, Wood, A. R., The MIGen Consortium, The PAGE Consortium, Study, T. L. C., Esko, T., Yang, J., Vedantam, S., Pers, T. H., Gustafsson, S., et al. (2014) · Nature Genetics · doi:10.1038/ng.3097 · Cited by 1,853 · see citing works

Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++

Davydov, E. V., Goode, D. L., Sirota, M., Cooper, G. M., Sidow, A., & Batzoglou, S. (2010) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1001025 · Cited by 1,757 · see citing works

Evolution and functional impact of rare coding variation from deep sequencing of human exomes

Tennessen, J. A., Bigham, A. W., O’Connor, T. D., Fu, W., Kenny, E. E., Gravel, S., McGee, S., Do, R., Liu, X., Jun, G., et al. (2012) · Science · doi:10.1126/science.1219240 · Cited by 1,613 · see citing works

Multiple and Ancient Origins of the Domestic Dog

Vilà, C., Savolainen, P., Maldonado, J. E., Amorim, I. R., Rice, J. E., Honeycutt, R. L., Crandall, K. A., Lundeberg, J., & Wayne, R. K. (1997) · Science · doi:10.1126/science.276.5319.1687 · Cited by 1,091 · see citing works

Human-like social skills in dogs?

Hare, B., & Tomasello, M. (2005) · Trends in Cognitive Sciences · doi:10.1016/j.tics.2005.07.003 · Cited by 967 · see citing works

The genomic signature of dog domestication reveals adaptation to a starch-rich diet

Axelsson, E., Ratnakumar, A., Arendt, M.-L., Maqbool, K., Webster, M. T., Perloski, M., Liberg, O., Arnemo, J. M., Hedhammar, Å., & Lindblad-Toh, K. (2013) · Nature · doi:10.1038/nature11837 · Cited by 963 · see citing works

Design and analysis of ChIP-seq experiments for DNA-binding proteins

Kharchenko, P., Tolstorukov, M., & Park, P. J. (2008) · Nature Biotechnology · doi:10.1038/nbt.1508 · Cited by 950 · see citing works

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatinPreprint

Giresi, P. G., Kim, J., McDaniell, R. M., Iyer, V. R., & Lieb, J. D. (2006) · Genome Research · doi:10.17615/8cez-3e87 · Cited by 949 · see citing works

Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication

vonHoldt, B. M., Pollinger, J. P., Lohmueller, K. E., Han, E., Parker, H. G., Quignon, P., Degenhardt, J. D., Boyko, A. R., Earl, D. A., Auton, A., et al. (2010) · Nature · doi:10.1038/nature08837 · Cited by 804 · see citing works

A Single Amino Acid Mutation Contributes to Adaptive Beach Mouse Color Pattern

Hoekstra, H. E., Hirschmann, R. J., Bundey, R. A., Insel, P. A., & Crossland, J. P. (2006) · Science · doi:10.1126/science.1126121 · Cited by 716 · see citing works

The Effect of Variation of Fitness

Haldane, J. B. S. (1937) · The American Naturalist · doi:10.1086/280722 · Cited by 680 · see citing works

A Single IGF1 Allele Is a Major Determinant of Small Size in Dogs

Sutter, N. B., Bustamante, C. D., Chase, K., GRAY, M. M., Zhao, K., Zhu, L., Padhukasahasram, B., Karlins, E., Davis, S. R., Jones, P. G., et al. (2007) · Science · doi:10.1126/science.1137045 · Cited by 673 · see citing works

An abundance of rare functional variants in 202 drug target genes sequenced in 14,002 people

Nelson, M. R., Wegmann, D., Ehm, M. G., Kessner, D., St. Jean, P., Verzilli, C., Shen, J., Tang, Z., Bacanu, S.-A., Fraser, D., et al. (2012) · Science · doi:10.1126/science.1217876 · Cited by 647 · see citing works

Positive and Negative Selection on the Human Genome

Fay, J. C., Wyckoff, G. J., & Wu, C. (2001) · Genetics · doi:10.1093/genetics/158.3.1227 · Cited by 646 · see citing works

The Evolution of Animal Domestication

Larson, G., & Fuller, D. Q. (2014) · Annual Review of Ecology, Evolution, and Systematics · doi:10.1146/annurev-ecolsys-110512-135813 · Cited by 640 · see citing works

Assessing the evolutionary impact of amino acid mutations in the human genome.

Boyko, A. R., Williamson, S. H., Indap, A. R., Degenhardt, J. D., Hernandez, R. D., Lohmueller, K. E., Adams, M. D., Schmidt, S., Sninsky, J. J., Sunyaev, S. R., et al. (2008) · PLoS Genetics · doi:10.1371/journal.pgen.1000083 · Cited by 628 · see citing works

Genome sequencing highlights the dynamic early history of dogs

Freedman, A. H., Gronau, I., Schweizer, R. M., Ortega-Del Vecchyo, D., Han, E., Silva, P. M., Galaverni, M., Fan, Z., Marx, P., Lorente-Galdos, B., et al. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004016 · Cited by 624 · see citing works

Rethinking Dog Domestication by Integrating Genetics, Archeology, and Biogeography

Larson, G., Karlsson, E. K., Perri, A., Webster, M. T., Ho, S. Y. W., Peters, J., Stahl, P. W., Piper, P. J., Lingaas, F., Fredholm, M., et al. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1203005109 · Cited by 540 · see citing works

Complete Mitochondrial Genomes of Ancient Canids Suggest a European Origin of Domestic Dogs

Thalmann, O., Shapiro, B., Cui, P., Schuenemann, V. J., Sawyer, S., Greenfield, D., Germonpré, M., Sablin, M., López‐Giráldez, F., Domingo‐Roura, X., et al. (2013) · Science · doi:10.1126/science.1243650 · Cited by 528 · see citing works

Population genomics of rapid adaptation by soft selective sweeps

Messer, P. W., & Petrov, D. A. (2013) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2013.08.003 · Cited by 475 · see citing works

Genetic hitchhiking

Barton, N. (2000) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2000.0716 · Cited by 475 · see citing works

Spontaneous Mutation Accumulation Studies in Evolutionary Genetics

Halligan, D. L., & Keightley, P. D. (2009) · Annual Review of Ecology Evolution and Systematics · doi:10.1146/annurev.ecolsys.39.110707.173437 · Cited by 469 · see citing works

A Simple Genetic Architecture Underlies Morphological Variation in Dogs

Boyko, A., Quignon, P., Li, L., Schoenebeck, J., Degenhardt, J. D., Lohmueller, K., Zhao, K., Brisbin, A., Parker, H., Vonholdt, B., et al. (2010) · PLoS Biology · doi:10.1371/journal.pbio.1000451 · Cited by 469 · see citing works

Genomic and archaeological evidence suggest a dual origin of domestic dogs

Frantz, L., Mullin, V. E., Pionnier-Capitan, M., Lebrasseur, O., Ollivier, M., Perri, A. R., Linderholm, A. E., Mattiangeli, V., Teasdale, M. D., Dimopoulos, E. A., et al. (2016) · Science · doi:10.1126/science.aaf3161 · Cited by 449 · see citing works

Ancient DNA Evidence for Old World Origin of New World Dogs

Leonard, J. A., Wayne, R. K., Wheeler, J. C., Valadez, R., Guillén, S. E., & Vilà, C. (2002) · Science · doi:10.1126/science.1076980 · Cited by 445 · see citing works

Large‐Scale Diversification of Skull Shape in Domestic Dogs: Disparity and Modularity

Drake, A. G., & Klingenberg, C. P. (2010) · The American Naturalist · doi:10.1086/650372 · Cited by 429 · see citing works

Molecular and Evolutionary History of Melanism in North American Gray Wolves

Anderson, T. M., vonHoldt, B. M., Candille, S. I., Musiani, M., Greco, C., Stahler, D. R., Smith, D. W., Padhukasahasram, B., Randi, E., Leonard, J. A., et al. (2009) · Science · doi:10.1126/science.1165448 · Cited by 416 · see citing works

Genetic Structure of the Purebred Domestic Dog

Parker, H., Kim, L., Sutter, N., Carlson, S., Lorentzen, T. D., Malek, T. B., Johnson, G. S., DeFrance, H. B., Ostrander, E., & Kruglyak, L. (2004) · Science · doi:10.1126/science.1097406 · Cited by 405 · see citing works

How reliable are empirical genomic scans for selective sweeps?Preprint

Teshima, K. M., Coop, G., & Przeworski, M. (2006) · Genome Research · doi:10.1101/gr.5105206 · Cited by 398 · see citing works

Fossil dogs and wolves from Palaeolithic sites in Belgium, the Ukraine and Russia: osteometry, ancient DNA and stable isotopes

Germonpré, M., Sablin, M., Stevens, R. E., Hedges, R. E. M., Hofreiter, M., Stiller, M., & Després, V. R. (2008) · Journal of Archaeological Science · doi:10.1016/j.jas.2008.09.033 · Cited by 393 · see citing works

Identification of Genomic Regions Associated with Phenotypic Variation between Dog Breeds using Selection Mapping

Vaysse, A., Ratnakumar, A., Derrien, T., Axelsson, E., Pielberg, G., Sigurðsson, S., Fall, T., Seppälä, E. H., Hansen, M. S., Lawley, C., et al. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002316 · Cited by 390 · see citing works

Ancient Wolf Genome Reveals an Early Divergence of Domestic Dog Ancestors and Admixture into High-Latitude Breeds

Skoglund, P., Ersmark, E., Palkopoulou, E., & Dalén, L. (2015) · Current Biology · doi:10.1016/j.cub.2015.04.019 · Cited by 380 · see citing works

The distribution of fitness effects of new deleterious amino acid mutations in humans.

Eyre-Walker, A., Woolfit, M., & Phelps, T. (2006) · Genetics · doi:10.1534/genetics.106.057570 · Cited by 377 · see citing works

THE MUTATION LOAD IN SMALL POPULATIONS

Kimura, M., Maruyama, T., & Crow, J. F. (1963) · Genetics · doi:10.1093/genetics/48.10.1303 · Cited by 374 · see citing works

Proportionally more deleterious genetic variation in European than in African populations

Lohmueller, K. E., Indap, A. R., Schmidt, S., Boyko, A. R., Hernandez, R. D., Hubisz, M. J., Sninsky, J. J., White, T. J., Sunyaev, S. R., Nielsen, R., et al. (2008) · Nature · doi:10.1038/nature06611 · Cited by 363 · see citing works

The genetics of pigmentation: from fancy genes to complex traits

Barsh, G. S. (1996) · Trends in Genetics · doi:10.1016/0168-9525(96)10031-7 · Cited by 358 · see citing works

Joint Inference of the Distribution of Fitness Effects of Deleterious Mutations and Population Demography Based on Nucleotide Polymorphism Frequencies

Keightley, P. D., & Eyre‐Walker, A. (2007) · Genetics · doi:10.1534/genetics.107.080663 · Cited by 358 · see citing works

A β-Defensin Mutation Causes Black Coat Color in Domestic Dogs

Candille, S. I., Kaelin, C. B., Cattanach, B. M., Yu, B., Thompson, D. A., Nix, M. A., Kerns, J. A., Schmutz, S. M., Millhauser, G. L., & Barsh, G. S. (2007) · Science · doi:10.1126/science.1147880 · Cited by 351 · see citing works

Out of southern East Asia: the natural history of domestic dogs across the world

Wang, G., Zhai, W., Yang, H., Wang, L., Li, Z., Yan-hu, L., Fan, R., Yin, T., Zhu, C., Poyarkov, A. D., et al. (2015) · Cell Research · doi:10.1038/cr.2015.147 · Cited by 350 · see citing works

An Expressed <i>Fgf4</i> Retrogene Is Associated with Breed-Defining Chondrodysplasia in Domestic Dogs

Parker, H. G., VonHoldt, B. M., Quignon, P., Margulies, E. H., Shao, S., Mosher, D. S., Spady, T. C., Elkahloun, A., Cargill, M., Jones, P. G., et al. (2009) · Science · doi:10.1126/science.1173275 · Cited by 342 · see citing works

Coat Variation in the Domestic Dog Is Governed by Variants in Three Genes

Cadieu, É., Neff, M. W., Quignon, P., Walsh, K. F., Chase, K., Parker, H. G., vonHoldt, B. M., Rhue, A., Boyko, A. R., Byers, A., et al. (2009) · Science · doi:10.1126/science.1177808 · Cited by 341 · see citing works

Experimental illumination of a fitness landscape

Hietpas, R. T., Jensen, J. D., & Bolon, D. N. A. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1016024108 · Cited by 336 · see citing works

Adaptive Variation in Beach Mice Produced by Two Interacting Pigmentation Genes

Steiner, C., Weber, J. N., & Hoekstra, H. E. (2007) · PLoS Biology · doi:10.1371/journal.pbio.0050219 · Cited by 335 · see citing works

Bottlenecks and Selective Sweeps during Domestication Have Increased Deleterious Genetic Variation in Dogs

Marsden, C. D., Ortega-Del Vecchyo, D., O’Brien, D. P., Taylor, J. F., Ramirez, O., Vilà, C., Marques-Bonet, T., Schnabel, R. D., Wayne, R. K., & Lohmueller, K. E. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1512501113 · Cited by 333 · see citing works

Dog behaviour, evolution, and cognition

Miklósi, Á. (2015) · Choice Reviews Online · doi:10.5860/choice.191407 · Cited by 328 · see citing works

Prehistoric genomes reveal the genetic foundation and cost of horse domestication

Schubert, M., Jónsson, H., Chang, D., Der Sarkissian, C., Ermini, L., Ginolhac, A., Albrechtsen, A., Dupanloup, I., Foucal, A., Petersen, B., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1416991111 · Cited by 324 · see citing works

The genomics of selection in dogs and the parallel evolution between dogs and humans

Wang, G.-D., Zhai, W., Yang, H.-C., Fan, R.-X., Cao, X., Zhong, L., Wang, L., Liu, F., Wu, H., Cheng, L.-G., et al. (2013) · Nature Communications · doi:10.1038/ncomms2814 · Cited by 323 · see citing works

A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids.Preprint

Vonholdt, B., Pollinger, J., Earl, D., Knowles, J., Boyko, A., Parker, H., Geffen, E., Pilot, M., Jędrzejewski, W., Jȩdrzejewska, B., et al. (2011) · Genome Research · doi:10.1101/gr.116301.110 · Cited by 322 · see citing works

Extensive and breed-specific linkage disequilibrium in Canis familiarisPreprint

Sutter, N. B., Eberle, M. A., Parker, H. G., Pullar, B. J., Kirkness, E. F., Kruglyak, L., & Ostrander, E. A. (2004) · Genome Research · doi:10.1101/gr.3147604 · Cited by 308 · see citing works

The Effects of Deleterious Mutations on Evolution at Linked Sites

Charlesworth, B. (2012) · Genetics · doi:10.1534/genetics.111.134288 · Cited by 304 · see citing works

Leader of the pack: gene mapping in dogs and other model organisms

Karlsson, E. K., & Lindblad‐Toh, K. (2008) · Nature Reviews Genetics · doi:10.1038/nrg2382 · Cited by 299 · see citing works

The effect of hitch-hiking on neutral genealogies

Barton, N. H. (1998) · Genetics Research · doi:10.1017/s0016672398003462 · Cited by 292 · see citing works

Estimating the mutation load in human genomes

Henn, B. M., Botigué, L. R., Bustamante, C. D., Clark, A. G., & Gravel, S. (2015) · Nature Reviews Genetics · doi:10.1038/nrg3931 · Cited by 281 · see citing works

The deleterious mutation load is insensitive to recent population history.

Simons, Y. B., Turchin, M. C., Pritchard, J. K., & Sella, G. (2014) · Nature Genetics · doi:10.1038/ng.2896 · Cited by 279 · see citing works

Evolution of Coloration Patterns

Protas, M. E., & Patel, N. H. (2008) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev.cellbio.24.110707.175302 · Cited by 272 · see citing works

CRANIAL MORPHOLOGY OF DOMESTIC AND WILD CANIDS: THE INFLUENCE OF DEVELOPMENT ON MORPHOLOGICAL CHANGE

Wayne, R. K. (1986) · Evolution · doi:10.1111/j.1558-5646.1986.tb00467.x · Cited by 271 · see citing works

Dogs Can Discriminate Emotional Expressions of Human Faces

Müller, C. A., Schmitt, K., Barber, A. L. A., & Huber, L. (2015) · Current Biology · doi:10.1016/j.cub.2014.12.055 · Cited by 271 · see citing works

Complex disease and phenotype mapping in the domestic dog

Hayward, J. J., Castelhano, M. G., Oliveira, K. C., Corey, E. E., Balkman, C. E., Baxter, T. L., Casal, M. L., Fang, M., Garrison, S. J., Kalla, S. E., et al. (2016) · Nature Communications · doi:10.1038/ncomms10460 · Cited by 267 · see citing works

Distance from sub-Saharan Africa predicts mutational load in diverse human genomes

Henn, B. M., Botigué, L. R., Peischl, S., Dupanloup, I., Lipatov, M., Maples, B. K., Martin, A. R., Musharoff, S. A., Cann, H. M., Snyder, M. P., et al. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1510805112 · Cited by 257 · see citing works

Distinguishing Between Selective Sweeps and Demography Using DNA Polymorphism Data

Jensen, J. D., Kim, Y., DuMont, V. L. B., Aquadro, C. F., & Bustamante, C. D. (2005) · Genetics · doi:10.1534/genetics.104.038224 · Cited by 252 · see citing works

Higher Levels of Neanderthal Ancestry in East Asians than in Europeans

Wall, J. D., Yang, M. A., Jay, F., Kim, S. K., Durand, E. Y., Stevison, L. S., Gignoux, C., Woerner, A., Hammer, M. F., & Slatkin, M. (2013) · Genetics · doi:10.1534/genetics.112.148213 · Cited by 249 · see citing works

The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication

Lü, J., Tang, T., Tang, H., Huang, J., Shi, S., & Wu, C. (2006) · Trends in Genetics · doi:10.1016/j.tig.2006.01.004 · Cited by 248 · see citing works

A 33,000-Year-Old Incipient Dog from the Altai Mountains of Siberia: Evidence of the Earliest Domestication Disrupted by the Last Glacial Maximum

Ovodov, N. D., Crockford, S. J., Kuzmin, Y. V., Higham, T., Hodgins, G. W. L., & van der Plicht, J. (2011) · PLoS ONE · doi:10.1371/journal.pone.0022821 · Cited by 248 · see citing works

Patterns of coding variation in the complete exomes of three Neandertals

Castellano, S., Parra, G., Sánchez-Quinto, F. A., Racimo, F., Kuhlwilm, M., Kircher, M., Sawyer, S., Fu, Q., Heinze, A., Nickel, B., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1405138111 · Cited by 247 · see citing works

Frequent adaptation and the McDonald–Kreitman test

Messer, P. W., & Petrov, D. A. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1220835110 · Cited by 230 · see citing works

Genetic structure in village dogs reveals a Central Asian domestication origin

Shannon, L. M., Boyko, R. H., Castelhano, M. G., Corey, E. E., Hayward, J. J., McLean, C., White, M. E., Said, M. A., Anita, B. A., Ikombe, N. B., et al. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1516215112 · Cited by 229 · see citing works

Modeling Effects of Environmental Change on Wolf Population Dynamics, Trait Evolution, and Life History

Coulson, T. N., MacNulty, D. R., Stahler, D. R., vonHoldt, B. M., Wayne, R. K., & Smith, D. W. (2011) · Science · doi:10.1126/science.1209441 · Cited by 216 · see citing works

Worldwide patterns of genomic variation and admixture in gray wolves

Fan, Z., Silva, P., Gronau, I., Wang, S., Armero, A. S., Schweizer, R. M., Ramirez, O., Pollinger, J., Galaverni, M., Ortega Del-Vecchyo, D., et al. (2016) · Genome Research · doi:10.1101/gr.197517.115 · Cited by 209 · see citing works

No evidence that selection has been less effective at removing deleterious mutations in Europeans than in Africans

Do, R., Balick, D. J., Li, H., Adzhubei, I. A., Sunyaev, S. R., & Reich, D. (2015) · Nature Genetics · doi:10.1038/ng.3186 · Cited by 208 · see citing works

Relaxation of selective constraint on dog mitochondrial DNA following domestication

Björnerfeldt, S., Webster, M. T., & Vilà, C. (2006) · Genome Research · doi:10.1101/gr.5117706 · Cited by 203 · see citing works

Role of very slightly deleterious mutations in molecular evolution and polymorphism

Ohta, T. (1976) · Theoretical Population Biology · doi:10.1016/0040-5809(76)90019-8 · Cited by 196 · see citing works

Controlling the False-Positive Rate in Multilocus Genome Scans for Selection

Thornton, K., & Jensen, J. D. (2006) · Genetics · doi:10.1534/genetics.106.064642 · Cited by 179 · see citing works

Hybridization and endangered species protection in the molecular era

Wayne, R. K., & Shaffer, H. B. (2016) · Molecular Ecology · doi:10.1111/mec.13642 · Cited by 174 · see citing works

Linkage Disequilibrium and Demographic History of Wild and Domestic Canids

GRAY, M. M., Granka, J. M., Bustamante, C. D., Sutter, N. B., Boyko, A. R., Zhu, L., Ostrander, E. A., & Wayne, R. K. (2009) · Genetics · doi:10.1534/genetics.108.098830 · Cited by 174 · see citing works

Unleashing the Canine GenomePreprint

Ostrander, E. A., & Kruglyak, L. (2000) · Genome Research · doi:10.1101/gr.155900 · Cited by 165 · see citing works

Palaeolithic dog skulls at the Gravettian Předmostí site, the Czech Republic

Germonpré, M., Lázničková‐Galetová, M., & Sablin, M. (2011) · Journal of Archaeological Science · doi:10.1016/j.jas.2011.09.022 · Cited by 161 · see citing works

Early human presence in the Arctic: Evidence from 45,000-year-old mammoth remains

Питулько, В. В., Tikhonov, A., Pavlova, E. Y., Nikolskiy, P. A., Kuper, K. E., & Николаевич, П. Р. (2016) · Science · doi:10.1126/science.aad0554 · Cited by 155 · see citing works

The legacy of domestication: accumulation of deleterious mutations in the dog genome

Cruz, F., Vila, C., & Webster, M. T. (2008) · Molecular Biology and Evolution · doi:10.1093/molbev/msn177 · Cited by 154 · see citing works

Genes of domestic mammals augmented by backcrossing with wild ancestors

Vilà, C., Seddon, J. M., & Ellegren, H. (2005) · Trends in Genetics · doi:10.1016/j.tig.2005.02.004 · Cited by 153 · see citing works

Genetic hitch-hiking in a subdivided population

Slatkin, M., & Wiehe, T. (1998) · Genetics Research · doi:10.1017/s001667239800319x · Cited by 150 · see citing works

Darwinian and demographic forces affecting human protein coding genesPreprint

Nielsen, R., Hubisz, M. J., Hellmann, I., Torgerson, D. G., Andrés, A. M., Albrechtsen, A., Gutenkunst, R. N., Adams, M. D., Cargill, M., Boyko, A. R., et al. (2009) · Genome Research · doi:10.1101/gr.088336.108 · Cited by 149 · see citing works

Weak Selection and Protein Evolution

Akashi, H. D., Osada, N., & Ohta, T. (2012) · Genetics · doi:10.1534/genetics.112.140178 · Cited by 139 · see citing works

Domestic Dogs and Cancer Research: A Breed-Based Genomics Approach

Davis, B. W., & Ostrander, E. A. (2014) · ILAR Journal · doi:10.1093/ilar/ilu017 · Cited by 137 · see citing works

The distribution of deleterious genetic variation in human populations

Lohmueller, K. E. (2014) · Current Opinion in Genetics &amp; Development · doi:10.1016/j.gde.2014.09.005 · Cited by 131 · see citing works

Evidence for Variation in the Effective Population Size of Animal Mitochondrial DNA

Piganeau, G., & Eyre‐Walker, A. (2009) · PLoS ONE · doi:10.1371/journal.pone.0004396 · Cited by 129 · see citing works

Evolutionary genomics of dog domestication

Wayne, R. K., & vonHoldt, B. M. (2012) · Mammalian Genome · doi:10.1007/s00335-011-9386-7 · Cited by 127 · see citing works

New evidence for Upper Palaeolithic small domestic dogs in South-Western Europe

Pionnier-Capitan, M., Bemilli, C., Bodu, P., Célérier, G., Ferrié, J., Fossé, P., Garcià, M., & Vigne, J. (2011) · Journal of Archaeological Science · doi:10.1016/j.jas.2011.02.028 · Cited by 125 · see citing works

Limb morphology of domestic and wild canids: The influence of development on morphologic change

Wayne, R. K. (1986) · Journal of Morphology · doi:10.1002/jmor.1051870304 · Cited by 118 · see citing works

Genetic subdivision and candidate genes under selection in North American grey wolves

Schweizer, R. M., vonHoldt, B. M., Harrigan, R. J., Knowles, J. C., Musiani, M., Coltman, D. W., Novembre, J., & Wayne, R. K. (2015) · Molecular Ecology · doi:10.1111/mec.13364 · Cited by 107 · see citing works

Demographically-based evaluation of genomic regions under selection in domestic dogs

Freedman, A. H., Schweizer, R. M., Ortega-Del Vecchyo, D., Han, E., Davis, B. W., Gronau, I., Silva, P. M., Galaverni, M., Fan, Z., Marx, P., et al. (2016) · PLoS Genetics · doi:10.1371/journal.pgen.1005851 · Cited by 104 · see citing works

RECOMBINATION AND HITCHHIKING OF DELETERIOUS ALLELES

Hartfield, M., & Otto, S. P. (2011) · Evolution · doi:10.1111/j.1558-5646.2011.01311.x · Cited by 103 · see citing works

Contributions of Protein-Coding and Regulatory Change to Adaptive Molecular Evolution in Murid Rodents

Halligan, D. L., Kousathanas, A., Ness, R. W., Harr, B., Eöry, L., Keane, T., Adams, D. J., & Keightley, P. D. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003995 · Cited by 101 · see citing works

Evidence for Hitchhiking of Deleterious Mutations within the Human Genome

Chun, S., & Fay, J. C. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002240 · Cited by 98 · see citing works

Insights into Morphology and Disease from the Dog Genome Project

Schoenebeck, J. J., & Ostrander, E. A. (2014) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-100913-012927 · Cited by 89 · see citing works

How do you kill 86 mammoths? Taphonomic investigations of mammoth megasites

Shipman, P. (2014) · Quaternary International · doi:10.1016/j.quaint.2014.04.048 · Cited by 88 · see citing works

The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves

Koch, I. J., Clark, M. M., Thompson, M. J., Deere, K. A., Wang, J., Duarte, L., Gnanadesikan, G. E., McCoy, E. L., Rubbi, L., Stahler, D. R., et al. (2015) · Molecular Ecology · doi:10.1111/mec.13480 · Cited by 86 · see citing works

Characteristics of Neutral and Deleterious Protein-Coding Variation among Individuals and Populations

Fu, W., Gittelman, R. M., Bamshad, M. J., & Akey, J. M. (2014) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2014.09.006 · Cited by 85 · see citing works

When Is Selection Effective?

Gravel, S. (2016) · Genetics · doi:10.1534/genetics.115.184630 · Cited by 81 · see citing works

Variation After a Selective Sweep in a Subdivided Population

Santiago, E., & Caballero, A. (2004) · Genetics · doi:10.1534/genetics.104.032813 · Cited by 80 · see citing works

The Remarkable Evolutionary History of the Human Amylase Genes

Meisler, M. H., & Ting, C.-N. (1993) · Critical Reviews in Oral Biology & Medicine · doi:10.1177/10454411930040033501 · Cited by 80 · see citing works

The impact of equilibrium assumptions on tests of selection

Crisci, J. L., Poh, Y.-P., Mahajan, S., & Jensen, J. D. (2013) · Frontiers in Genetics · doi:10.3389/fgene.2013.00235 · Cited by 75 · see citing works

Shifts in the intensity of purifying selection: An analysis of genome-wide polymorphism data from two closely related yeast speciesPreprint

Elyashiv, E., Bullaughey, K., Sattath, S., Rinott, Y., Przeworski, M., & Sella, G. (2010) · Genome Research · doi:10.1101/gr.108993.110 · Cited by 74 · see citing works

Population Growth Inflates the Per-Individual Number of Deleterious Mutations and Reduces Their Mean Effect

Gazave, É., Chang, D., Clark, A. G., & Keinan, A. (2013) · Genetics · doi:10.1534/genetics.113.153973 · Cited by 73 · see citing works

Evaluating the performance of selection scans to detect selective sweeps in domestic dogs

Schlamp, F., van der Made, J., Stambler, R., Chesebrough, L., Boyko, A. R., & Messer, P. W. (2015) · Molecular Ecology · doi:10.1111/mec.13485 · Cited by 71 · see citing works

Black coats in an admixed wolf × dog pack is melanism an indicator of hybridization in wolves?

Caniglia, R., Fabbri, E., Greco, C., Galaverni, M., Manghi, L., Boitani, L., Sforzi, A., & Randi, E. (2013) · European Journal of Wildlife Research · doi:10.1007/s10344-013-0703-1 · Cited by 69 · see citing works

Inference of Gorilla Demographic and Selective History from Whole-Genome Sequence Data

McManus, K. F., Kelley, J. L., Song, S., Veeramah, K. R., Woerner, A. E., Stevison, L. S., Ryder, O. A., Great Ape Genome Project, Kidd, J. M., Wall, J. D., et al. (2014) · Molecular Biology and Evolution · doi:10.1093/molbev/msu394 · Cited by 61 · see citing works

Negative-assortative mating for color in wolves

Hedrick, P. W., Smith, D. W., & Stahler, D. R. (2016) · Evolution · doi:10.1111/evo.12906 · Cited by 59 · see citing works

The Invaders

Shipman, P. (2015) · Harvard University Press eBooks · doi:10.4159/9780674425385 · Cited by 57 · see citing works

So many doggone traits: mapping genetics of multiple phenotypes in the domestic dog

Rimbault, M., & Ostrander, E. A. (2012) · Human Molecular Genetics · doi:10.1093/hmg/dds323 · Cited by 44 · see citing works

Population Genomic Analysis Reveals a Rich Speciation and Demographic History of Orang-utans (Pongo pygmaeus and Pongo abelii)

Ma, X., Kelley, J. L., Eilertson, K. E., Musharoff, S. A., Degenhardt, J. D., Martins, A. L., Vinař, T., Kosiol, C., Siepel, A. C., Gutenkunst, R. N., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0077175 · Cited by 34 · see citing works

Pervasive Effects of Aging on Gene Expression in Wild Wolves

Charruau, P., Johnston, R. A., Stahler, D. R., Lea, A. J., Snyder‐Mackler, N., Smith, D. W., vonHoldt, B. M., Cole, S. W., Tung, J., & Wayne, R. K. (2016) · Molecular Biology and Evolution · doi:10.1093/molbev/msw072 · Cited by 30 · see citing works

Heterozygote Advantage in a Finite Population: Black Color in Wolves

Hedrick, P. W., Stahler, D. R., & Dekker, D. (2014) · Journal of Heredity · doi:10.1093/jhered/esu024 · Cited by 24 · see citing works

Analysis of the canine brain transcriptome with an emphasis on the hypothalamus and cerebral cortex

Roy, M., Kim, N., Kim, K., Chung, W.-H., Achawanantakun, R., Sun, Y., & Wayne, R. K. (2013) · Mammalian Genome · doi:10.1007/s00335-013-9480-0 · Cited by 23 · see citing works

Analysis of structural diversity in wolf-like canids reveals post-domestication variants

Ramírez, Ó., Olalde, Í., Berglund, J., Lorente-Galdós, B., Hernández-Rodríguez, J., Quilez, J., Webster, M. T., Wayne, R. K., Lalueza‐Fox, C., Vilà, C., et al. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-465 · Cited by 18 · see citing works

Serum isoamylase values in normal dogs and dogs with exocrine pancreatic insufficiency

Simpson, J. W., Doxey, D. L., & Brown, R. (1984) · Veterinary Research Communications · doi:10.1007/bf02214725 · Cited by 14 · see citing works

How the wolf became the dog

Grimm, D. (2015) · Science · doi:10.1126/science.348.6232.277 · Cited by 5 · see citing works

Adaptation of S. cerevisiae to Fermented Food Environments Reveals Remarkable Genome Plasticity and the Footprints of Domestication

Legras, J., Galéote, V., Bigey, F., Camarasa, C., Marsit, S., Nidelet, T., Sanchez, I., Couloux, A., Guy, J., Franco‐Duarte, R., et al. (2018) · Molecular Biology and Evolution · doi:10.1093/molbev/msy066 · Cited by 216 · see citing works

Genetic Costs of Domestication and Improvement

Moyers, B. T., Morrell, P. L., & McKay, J. K. (2018) · Journal of Heredity · doi:10.1093/jhered/esx069 · Cited by 216 · see citing works

Independent domestication events in the blue‐cheese fungus Penicillium roqueforti

Dumas, É., Feurtey, A., de la Vega, R. C. R., Prieur, S. L., Snirc, A., Coton, M., Thierry, A., Coton, E., Piver, M. L., Roueyre, D., et al. (2020) · Molecular Ecology · doi:10.1111/mec.15359 · Cited by 94 · see citing works

Breeding history and candidate genes responsible for black skin of Xichuan black-bone chicken

Li, D., Sun, G., Zhang, M., Cao, Y., Zhang, C., Fu, Y., Li, F., Li, G., Jiang, R., Han, R., et al. (2020) · BMC Genomics · doi:10.1186/s12864-020-06900-8 · Cited by 76 · see citing works

Conservation of adaptive potential and functional diversity

Hoelzel, A. R., Bruford, M. W., & Fleischer, R. C. (2019) · Conservation Genetics · doi:10.1007/s10592-019-01151-x · Cited by 70 · see citing works

Genetic Pathways of Aging and Their Relevance in the Dog as a Natural Model of Human Aging

Sándor, S., & Kubinyi, E. (2019) · Frontiers in Genetics · doi:10.3389/fgene.2019.00948 · Cited by 66 · see citing works

De Novo Mutation Rate Estimation in Wolves of Known Pedigree

Koch, E. M., Schweizer, R. M., Schweizer, T. M., Stahler, D. R., Smith, D. W., Wayne, R. K., & Novembre, J. (2019) · Molecular Biology and Evolution · doi:10.1093/molbev/msz159 · Cited by 64 · see citing works

Paleogenomic Inferences of Dog Domestication

Thalmann, O., & Perri, A. R. (2018) · Population genomics · doi:10.1007/13836_2018_27 · Cited by 63 · see citing works

Survival in the Tropics despite isolation, inbreeding and asexual reproduction: insights from the genome of the world’s southernmost poplar (Populus ilicifolia)

Chen, Z., Ai, F., Zhang, J., Ma, X., Yang, W., Wang, W., Su, Y., Wang, M., Yang, Y. P., Mao, K., et al. (2020) · The Plant Journal · doi:10.1111/tpj.14744 · Cited by 41 · see citing works

The impact of identity by descent on fitness and disease in dogs

Mooney, J. A., Yohannes, A., & Lohmueller, K. E. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2019116118 · Cited by 37 · see citing works

Accumulation of deleterious mutations in the domestic yak genome

Xie, X., Yang, Y. P., Ren, Q., Ding, X., Bao, P., Yan, B., Yan, X., Han, J., Yan, P., & Qiu, Q. (2018) · Animal Genetics · doi:10.1111/age.12703 · Cited by 36 · see citing works

Domesticating olfaction: Dog breeds, including scent hounds, have reduced cribriform plate morphology relative to wolves

Bird, D., Jacquemetton, C., Buelow, S. A., Evans, A. W., & Valkenburgh, B. V. (2020) · The Anatomical Record · doi:10.1002/ar.24518 · Cited by 32 · see citing works

The Fecal Microbiota of Dogs Switching to a Raw Diet Only Partially Converges to That of Wolves

Xu, J., Becker, A. A. M. J., Luo, Y. H., Zhang, W., Ge, B., Leng, C., Wang, G., Ding, L., Wang, J., Fu, X., et al. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.701439 · Cited by 27 · see citing works

Genome-wide analysis reveals molecular convergence underlying domestication in 7 bird and mammals

Hou, Y., Qi, F., Bai, X., Ren, T., Shen, X., Chu, Q., Zhang, X., & Lu, X. (2020) · BMC Genomics · doi:10.1186/s12864-020-6613-1 · Cited by 25 · see citing works

Genetics of canine myxomatous mitral valve disease

O’Brien, M. J., Beijerink, N., & Wade, C. M. (2021) · Animal Genetics · doi:10.1111/age.13082 · Cited by 29 · see citing works

Neuropeptides as facilitators of domestication

Herbeck, Y. E., & Gulevich, R. G. (2018) · Cell and Tissue Research · doi:10.1007/s00441-018-2939-2 · Cited by 24 · see citing works

Ethical Concerns about Fashionable Dog Breeding

Menor-Campos, D. J. (2024) · Animals · doi:10.3390/ani14050756 · Cited by 20 · see citing works

Possible origins and implications of atypical morphologies and domestication-like traits in wild golden jackals (Canis aureus)

Barash, A., Preiss-Bloom, S., Machluf, Y., Fabbri, E., Malkinson, D., Velli, E., Mucci, N., Barash, A., Caniglia, R., Dayan, T., et al. (2023) · Scientific Reports · doi:10.1038/s41598-023-34533-w · Cited by 18 · see citing works

Emerging genomic applications in mammalian ecology, evolution, and conservation

Larsen, P. A., & Matocq, M. D. (2019) · Journal of Mammalogy · doi:10.1093/jmammal/gyy184 · Cited by 16 · see citing works

Forensic validation of a panel of 12 SNPs for identification of Mongolian wolf and dog

Jiang, H. H., Li, B., Ma, Y., Bai, S. Y., Dahmer, T. D., Linacre, A. M. T., & Xu, Y. (2020) · Scientific Reports · doi:10.1038/s41598-020-70225-5 · Cited by 15 · see citing works

The Fox Domestication Experiment and Dog Evolution: A View Based on Modern Molecular, Genetic, and Archaeological Data

Trut, L. N., Kharlamova, A. V., Сергеевич, П. А., & Herbeck, Y. E. (2021) · Russian Journal of Genetics · doi:10.1134/s1022795421070140 · Cited by 12 · see citing works

Complex patterns of sex-biased demography in canines

Phung, T. N., Wayne, R., Wilson, M., & Lohmueller, K. (2018) · bioRxiv · doi:10.1098/rspb.2018.1976 · Cited by 9 · see citing works

[The domestication of Penicillium cheese fungi].

Ropars, J., Caron, T., Lo, Y., Bennetot, B., & Giraud, T. (2020) · PubMed · doi:10.5802/crbiol.15 · Cited by 8 · see citing works

Carbon and nitrogen isotopic composition of commercial dog food in Brazil

Galera, L. D. A., Filho, A. L. A., Reis, L. S., de Souza, J. L., Hernández, Y. A., & Martinelli, L. A. (2019) · PeerJ · doi:10.7717/peerj.5828 · Cited by 7 · see citing works

A first exploratory comparison of the behaviour of wolves (Canis lupus) and wolf-dog hybrids in captivity

Amici, F., Meacci, S., Caray, E., Oña, L. S., Liebal, K., & Ciucci, P. (2024) · Animal Cognition · doi:10.1007/s10071-024-01849-7 · Cited by 5 · see citing works

Genotypic and phenotypic consequences of domestication in dogs

Sweetalana, Nataneli, S., Huang, S., Mooney, J. A., & Szpiech, Z. A. (2026) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkag195 · Cited by 5 · see citing works

Are feralization and domestication truly mirror processes?

Niego, A., & Benítez‐Burraco, A. (2021) · Ethology Ecology & Evolution · doi:10.1080/03949370.2021.1975314 · Cited by 5 · see citing works

Des milliers d’années de relation homme-chien

Ollivier, M. (2024) · Biologie Aujourd hui · doi:10.1051/jbio/2024011 · Cited by 3 · see citing works

İnsan Kontrolü Dışındaki Köpekler için Kullanılan Kavramların Karmaşıklığı

Keten, A. (2022) · AVRASYA TERİM DERGİSİ · doi:10.31451/ejatd.1163646 · Cited by 3 · see citing works

Sosyal Sağlık Perspektifinden Hayvan Sevgisi ve Karşıtlığı: Sokak Köpekleri ve Yeni Toplumsal Riskler

YÜCER, H. M., & KIRAN, B. A. (2023) · Academic Platform Journal of Halal Life Style · doi:10.53569/apjhls.1406226 · Cited by 3 · see citing works

Abnormal features of human self‐domestication in bipolar disorder

Benítez‐Burraco, A., & Hansen, E. J. (2023) · European Journal of Neuroscience · doi:10.1111/ejn.15959 · Cited by 2 · see citing works

The Genetic Architecture of Local Adaptation and Reproductive Character Displacement in Scutiger boulengeri Complex (Anura: Megophryidae)

Lin, X., Yan, C., Wang, Y., Huang, S., Yu, H., Shih, C., Jiang, J., & Xie, F. (2024) · Molecular Ecology · doi:10.1111/mec.17611 · Cited by 2 · see citing works

Is the ‘canine surrogacy approach’ (CSA) still valid for dogs and humans in market-oriented and subsistence-oriented communities in Brazil?

Filho, A. L. A., Nardoto, G. B., Galera, L. D. A., de Souza, J. L., Reis, L. S., Hernández, Y. A., Sales, R., Gerardi, D. G., & Martinelli, L. A. (2019) · Isotopes in Environmental and Health Studies · doi:10.1080/10256016.2019.1598986 · Cited by 2 · see citing works

The genomic landscape of mammal domestication might be orchestrated by selected transcription factors regulating brain and craniofacial development

Benítez‐Burraco, A., Uriagereka, J., & Nataf, S. (2023) · Development Genes and Evolution · doi:10.1007/s00427-023-00709-7 · Cited by 4 · see citing works

The impact of identity-by-descent on fitness and disease in natural and domesticated <i>Canid</i> populations

Mooney, J. A., Yohannes, A., & Lohmueller, K. E. (2020) · doi:10.1101/2020.11.16.385443 · Cited by 1 · see citing works

Research Methods for the Analysis of Visual Emotion Cues in Animals: A Workshop Report

Correia‐Caeiro, C., Zamansky, A., Karl, S., & Bremhorst, A. (2025) · Animals · doi:10.3390/ani15213142 · Cited by 1 · see citing works

Fine-scale recombination rates inferred using the canFam4 assembly are strongly correlated with previous maps of dog recombination

Kidd, J. M. (2025) · Mammalian Genome · doi:10.1007/s00335-025-10178-0 · Cited by 1 · see citing works

Discovering disease causing variants in dogs through whole genome sequencing

Kolicheski, A. (2017) · doi:10.32469/10355/62312

Using whole-genome sequencing data for demographic and functional evaluations of small managed populations

Bortoluzzi, C. (2020) · doi:10.18174/528193

Are feralization and domestication truly mirror processes?Preprint

Niego, A., & Benítez‐Burraco, A. (2021) · doi:10.31234/osf.io/px9hg

In Memoriam: Robert K. Wayne, a pioneer of evolutionary genomics for wildlife with an emphasis on endangered species

vonHoldt, B. M., Schweizer, R. M., Stahler, D. R., Robinson, J. A., Pires, D., & Koepfli, K. (2023) · Journal of Heredity · doi:10.1093/jhered/esad005

Individuals Vary

Ha, J. C., Brad, T. L., & Ha, J. C. (2024) · CABI eBooks · doi:10.1079/9781800624566.0004

What We Know, What We Don’t, and Where We’re Going

Ha, J. C., Brad, T. L., & Ha, J. C. (2024) · CABI eBooks · doi:10.1079/9781800624566.0011

A Crash Course in Genetics

Ha, J. C., Brad, T. L., & Ha, J. C. (2024) · CABI eBooks · doi:10.1079/9781800624566.0003

How to Build a Breed

Ha, J. C., Brad, T. L., & Ha, J. C. (2024) · CABI eBooks · doi:10.1079/9781800624566.0002

What Is a Dog?

Ha, J. C., Brad, T. L., & Ha, J. C. (2024) · CABI eBooks · doi:10.1079/9781800624566.0001

Haptic Signals as a Communication Tool Between Handlers and Dogs: Review of a New Field

Jean-Joseph, H., & Bovet, D. (2026) · Animals · doi:10.3390/ani16020323

Evolution of Penicillium fungi : Adaptation and Degeneration in Fermented Food Environments

Lo, Y. (2019) · doi:10.70675/19160c2bz4bb7z4dcezb04az8d64f7073d9a

Les mélanomes muqueux canins comme modèle génétique et thérapeutique des mélanomes muqueux humains

Prouteau, A. (2020) · theses.fr (ABES) · doi:10.70675/b9dc1f15z26a2z434az856azc3f2cc489b2e

Evolutionary history and life-history traits influence cause-specific mortality in domestic dogs

Bargas-Galarraga, I., von Hardenberg, A., & González‐Voyer, A. (2026) · Journal of Evolutionary Biology · doi:10.1093/jeb/voag046

Demography-aware inference of the strength of natural selection

Ortega Del Vecchyo, V. D. (2016) · eScholarship (California Digital Library)

Bottlenecks and Selective Sweeps during Domestication Have Increased Deleterious Genetic Variation in Dogs

Marsden, C. D., Ortega-Del Vecchyo, D., O’Brien, D. P., Taylor, J. F., Ramirez, O., Vilà, C., Marques-Bonet, T., Schnabel, R. D., Wayne, R. K., & Lohmueller, K. E. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1512501113 · Cited by 333 · see citing works

Data from: Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs

Marsden, C. D., Ortega-Del Vecchyo, D., O'Brien, D. P., Taylor, J. F., Ramírez, Ó., Vila, C., Marquès‐Bonet, T., Schnabel, R. D., Wayne, R. K., & Lohmueller, K. E. (2015) · Data Archiving and Networked Services (DANS) · doi:10.5061/dryad.012s5

Demographic history, selection and functional diversity of the canine genome

Ostrander, E. A., Wayne, R. K., Freedman, A. H., & Davis, B. W. (2017) · Nature Reviews Genetics · doi:10.1038/nrg.2017.67 · Cited by 183 · see citing works

The legacy of domestication: accumulation of deleterious mutations in the dog genome

Cruz, F., Vila, C., & Webster, M. T. (2008) · Molecular Biology and Evolution · doi:10.1093/molbev/msn177 · Cited by 154 · see citing works