The DOI matches its Crossref record; 9 of the 9 references it cites were found in a registry or an index.
Mitochondria-associated microRNAs in rat hippocampus following traumatic brain injury
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The cited source says what the claim attributes to it.
In the citing paper
“More specifically, our previous study shows that miR-146a, miR-142-3p, miR-142-5p, and miR-223 are predominately expressed in microglia and astrocytes [31], which is in line with the functional role of these miRNAs.”
From The Mitochondria-Associated ER Membranes Are Novel Subcellular Locations Enriched for Inflammatory-Responsive MicroRNAs (2020) · cites this paper as [31]
In the citing paper
“and that these miRNAs display a mitochondria-to-cytoplasm compartmental shift following a severe TBI [30, 31].”
From The Mitochondria-Associated ER Membranes Are Novel Subcellular Locations Enriched for Inflammatory-Responsive MicroRNAs (2020) · cites this paper as [31]
In the citing paper
“We reported previously that several inflammatory-responsive miRNAs (e.g., miR-146a, miR-142-3p, and miR-142-5p) are preferentially associated with mitochondria isolated from rat hippocampus”
From The Mitochondria-Associated ER Membranes Are Novel Subcellular Locations Enriched for Inflammatory-Responsive MicroRNAs (2020) · cites this paper as [31]
In the citing paper
“Interestingly, we did not find any evidence supporting the inter-organelle shift of other miRNAs such as miR-107, or miR-155, although these cytosolic miRNAs have been shown to be altered in TBI [31, 72].”
From The Mitochondria-Associated ER Membranes Are Novel Subcellular Locations Enriched for Inflammatory-Responsive MicroRNAs (2020) · cites this paper as [31]
In the citing paper
“These include three miRNAs, miR-146a, miR-142-3p, and miR-142-5p, that were previously identified to be highly enriched in rat hippocampal mitochondria [30, 31], as well as several other miRNAs including miR-223 and two neuronal-enriched miRNAs, miR-124 and miR-107 [62].”
From The Mitochondria-Associated ER Membranes Are Novel Subcellular Locations Enriched for Inflammatory-Responsive MicroRNAs (2020) · cites this paper as [31]
In the citing paper
“Our prior studies showed that, relative to the cytosol, miR-146a, miR-142-3p, and miR-142-5p are highly enriched in mitochondria isolated from rat hippocampus and postulated the presence of an inter-organelle network for miRNA localization and trafficking [29, 31].”
From The Mitochondria-Associated ER Membranes Are Novel Subcellular Locations Enriched for Inflammatory-Responsive MicroRNAs (2020) · cites this paper as [31]
In the citing paper
“Previous microarray data (41) and data obtained from cell cultures (42) also pointed to an enriched expression of miR-146a in microglia compared to other CNS resident cells.”
From Absence of miRNA-146a Differentially Alters Microglia Function and Proteome (2020) · cites this paper as [42]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments
Bustin, S. A., Benes, V., Garson, J. A., Hellemans, J., Huggett, J., Kubista, M., Mueller, R., Nolan, T., Pfaffl, M. W., Shipley, G. L., et al. (2009) · Clinical Chemistry · doi:10.1373/clinchem.2008.112797 · Cited by 16,303
A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing
Landgraf, P., Rusu, M., Sheridan, R., Sewer, A., Iovino, N., Aravin, A., Pfeffer, S., Rice, A., Kamphorst, A. O., Landthaler, M., et al. (2007) · Cell · doi:10.1016/j.cell.2007.04.040 · Cited by 3,626
Gene silencing by microRNAs: contributions of translational repression and mRNA decay
Huntzinger, E., & Izaurralde, E. (2011) · Nature Reviews Genetics · doi:10.1038/nrg2936 · Cited by 2,339
Mitochondria: More Than Just a Powerhouse
McBride, H. M., Neuspiel, M., & Wasiak, S. (2006) · Current Biology · doi:10.1016/j.cub.2006.06.054 · Cited by 1,985
Requirement of bic/microRNA-155 for Normal Immune Function
Rodriguez, A., Vigorito, E., Clare, S., Warren, M. V., Couttet, P., Soond, D. R., van Dongen, S., Grocock, R. J., Das, P. P., Miska, E. A., et al. (2007) · Science · doi:10.1126/science.1139253 · Cited by 1,833
MicroRNAs and immunity: Novel players in the regulation of normal immune function and inflammation
Sonkoly, E., Ståhle, M., & Pivarcsi, A. (2008) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2008.01.005 · Cited by 523 · cited 3×
“The levels of miR-155 and miR-223, both of which play a role in several biological/ pathological processes including immunity, cancer, and inflammatory responses (Sonkoly et al., 2008; Quinn and O’Neill, 2011; Higgs and Slack, 2013; Vigorito et al., 2013; Seddiki et al., 2014; Taibi et al., 2014), were significantly e…”
BackgroundmiR‐155 as a multiple sclerosis–relevant regulator of myeloid cell polarization
Moore, C. S., Rao, V. T. S., Durafourt, B. A., Bedell, B. J., Ludwin, S. K., Bar‐Or, A., & Antel, J. P. (2013) · Annals of Neurology · doi:10.1002/ana.23967 · Cited by 219 · cited 1×
“MiR-155 is known to participate in the regulation of inflammatory responses (KurowskaStolarska et al., 2011; Moore et al., 2013), which also occur at early time points following TBI.”
BackgroundThe multiple roles of microRNA-155 in oncogenesis
Higgs, G., & Slack, F. (2013) · Journal of Clinical Bioinformatics · doi:10.1186/2043-9113-3-17 · Cited by 137 · cited 2×
“The levels of miR-155 and miR-223, both of which play a role in several biological/ pathological processes including immunity, cancer, and inflammatory responses (Sonkoly et al., 2008; Quinn and O’Neill, 2011; Higgs and Slack, 2013; Vigorito et al., 2013; Seddiki et al., 2014; Taibi et al., 2014), were significantly e…”
BackgroundExpression of miR-15/107 Family MicroRNAs in Human Tissues and Cultured Rat Brain Cells
Wang, W.-X., Danaher, R. J., Miller, C. S., Berger, J. R., Nubia, V. G., Wilfred, B. S., Neltner, J. H., Norris, C. M., & Nelson, P. T. (2014) · Genomics, Proteomics & Bioinformatics · doi:10.1016/j.gpb.2013.10.003 · Cited by 67
Self-citation
Research works printed but not linked: 74
- Ansari, 2008, Oxidative stress and modification of synaptic proteins in hippocampus after traumatic brain injury, Free Radic. Biol. Med., 45, 443, 10.1016/j.freeradbiomed.2008.04.038 · DOI · Paper page
- Atorino, 2003, Loss of m-AAA protease in mitochondria causes complex I deficiency and increased sensitivity to oxidative stress in hereditary spastic paraplegia, J. Cell Biol., 163, 777, 10.1083/jcb.200304112 · DOI
- Baldwin, 1997, Neuronal cell loss in the CA3 subfield of the hippocampus following cortical contusion utilizing the optical disector method for cell counting, J. Neurotrauma, 14, 385, 10.1089/neu.1997.14.385 · DOI · Paper page
- Bandiera, 2011, Nuclear outsourcing of RNA interference components to human mitochondria, PLoS One, 6, e20746, 10.1371/journal.pone.0020746 · DOI
- Barrey, 2011, Pre-microRNA and mature microRNA in human mitochondria, PLoS One, 6, e20220, 10.1371/journal.pone.0020220 · DOI
- Bartel, 2004, MicroRNAs: genomics, biogenesis, mechanism, and function, Cell, 116, 281, 10.1016/S0092-8674(04)00045-5 · DOI
- Bartel, 2009, MicroRNAs: target recognition and regulatory functions, Cell, 136, 215, 10.1016/j.cell.2009.01.002 · DOI · Paper page
- Bian, 2010, Identification of mouse liver mitochondria-associated miRNAs and their potential biological functions, Cell Res., 20, 1076, 10.1038/cr.2010.119 · DOI
- Brown, 2004, Nitrogen disruption of synaptoneurosomes: an alternative method to isolate brain mitochondria, J. Neurosci. Methods, 137, 299, 10.1016/j.jneumeth.2004.02.028 · DOI
- Calin, 2006, MicroRNA signatures in human cancers, Nat. Rev. Cancer, 6, 857, 10.1038/nrc1997 · DOI
- Chen, 2007, The evolution of gene regulation by transcription factors and microRNAs, Nat. Rev. Genet., 8, 93, 10.1038/nrg1990 · DOI · Paper page
- Clark, 2000, Caspase-3 mediated neuronal death after traumatic brain injury in rats, J. Neurochem., 74, 740, 10.1046/j.1471-4159.2000.740740.x · DOI
- Das, 2012, Nuclear miRNA regulates the mitochondrial genome in the heart, Circ. Res., 110, 1596, 10.1161/CIRCRESAHA.112.267732 · DOI
- Davis, 2008, Fasting is neuroprotective following traumatic brain injury, J. Neurosci. Res., 86, 1812, 10.1002/jnr.21628 · DOI · Paper page
- Di, 2014, MicroRNAs expression and function in cerebral ischemia reperfusion injury, J. Mol. Neurosci., 53, 242, 10.1007/s12031-014-0293-8 · DOI
- Dietrich, 1994, Early microvascular and neuronal consequences of traumatic brain injury: a light and electron microscopic study in rats, J. Neurotrauma, 11, 289, 10.1089/neu.1994.11.289 · DOI
- Ernoult-Lange, 2012, P-bodies and mitochondria: which place in RNA interference?, Biochimie, 94, 1572, 10.1016/j.biochi.2012.03.008 · DOI
- Faul, 2010, Traumatic Brain Injury in the United States: Emergency Department Visits, Hospitalizations and Deaths 2002–2006, 10.15620/cdc.5571 · DOI · Paper page
- Fazi, 2005, A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis, Cell, 123, 819, 10.1016/j.cell.2005.09.023 · DOI · Paper page
- Gilmer, 2009, Early mitochondrial dysfunction after cortical contusion injury, J. Neurotrauma, 26, 1271, 10.1089/neu.2008.0857 · DOI · Paper page
- Hata, 2013, Functions of microRNAs in cardiovascular biology and disease, Annu. Rev. Physiol., 75, 69, 10.1146/annurev-physiol-030212-183737 · DOI
- Hicks, 1996, Temporal and spatial characterization of neuronal injury following lateral fluid-percussion brain injury in the rat, Acta Neuropathol., 91, 236, 10.1007/s004010050421 · DOI
- Hoshino, 1999, Cutting edge: Toll-like receptor 4 (TLR4)-deficient mice are hyporesponsive to lipopolysaccharide: evidence for TLR4 as the Lps gene product, J. Immunol., 162, 3749, 10.4049/jimmunol.162.7.3749 · DOI · Paper page
- Hu, 2012, Expression of miRNAs and their cooperative regulation of the pathophysiology in traumatic brain injury, PLoS One, 7, e39357, 10.1371/journal.pone.0039357 · DOI
- Hu, 2013, Anti-apoptotic effect of microRNA-21 after contusion spinal cord injury in rats, J. Neurotrauma, 30, 1349, 10.1089/neu.2012.2748 · DOI · Paper page
- Huang, 2011, Mitochondria associate with P-bodies and modulate microRNA-mediated RNA interference, J. Biol. Chem., 286, 24219, 10.1074/jbc.M111.240259 · DOI
- Johnnidis, 2008, Regulation of progenitor cell proliferation and granulocyte function by microRNA-223, Nature, 451, 1125, 10.1038/nature06607 · DOI · Paper page
- Kren, 2009, MicroRNAs identified in highly purified liver-derived mitochondria may play a role in apoptosis, RNA Biol., 6, 65, 10.4161/rna.6.1.7534 · DOI
- Kurowska-Stolarska, 2011, MicroRNA-155 as a proinflammatory regulator in clinical and experimental arthritis, Proc. Natl. Acad. Sci. U. S. A., 108, 11193, 10.1073/pnas.1019536108 · DOI
- Latronico, 2012, The might of microRNA in mitochondria, Circ. Res., 110, 1540, 10.1161/CIRCRESAHA.112.271312 · DOI
- Lei, 2009, Microarray based analysis of microRNA expression in rat cerebral cortex after traumatic brain injury, Brain Res., 1284, 191, 10.1016/j.brainres.2009.05.074 · DOI · Paper page
- Lifshitz, 2003, Structural and functional damage sustained by mitochondria after traumatic brain injury in the rat: evidence for differentially sensitive populations in the cortex and hippocampus, J. Cereb. Blood Flow Metab., 23, 219, 10.1097/01.WCB.0000040581.43808.03 · DOI · Paper page
- Lifshitz, 2004, Mitochondrial damage and dysfunction in traumatic brain injury, Mitochondrion, 4, 705, 10.1016/j.mito.2004.07.021 · DOI
- Liu, 2008, MicroRNAs: biogenesis and molecular functions, Brain Pathol., 18, 113, 10.1111/j.1750-3639.2007.00121.x · DOI
- Liu, 2009, Altered microRNA expression following traumatic spinal cord injury, Exp. Neurol., 219, 424, 10.1016/j.expneurol.2009.06.015 · DOI · Paper page
- Liu, 2014, Traumatic brain injury dysregulates microRNAs to modulate cell signaling in rat hippocampus, PLoS One, 9, e103948, 10.1371/journal.pone.0103948 · DOI
- Lung, 2006, Identification of small non-coding RNAs from mitochondria and chloroplasts, Nucleic Acids Res., 34, 3842, 10.1093/nar/gkl448 · DOI
- Maniataki, 2005, Human mitochondrial tRNAMet is exported to the cytoplasm and associates with the Argonaute 2 protein, RNA, 11, 849, 10.1261/rna.2210805 · DOI
- McIntosh, 1998, The Dorothy Russell Memorial Lecture. The molecular and cellular sequelae of experimental traumatic brain injury: pathogenetic mechanisms, Neuropathol. Appl. Neurobiol., 24, 251, 10.1046/j.1365-2990.1998.00121.x · DOI
- Mercer, 2011, The human mitochondrial transcriptome, Cell, 146, 645, 10.1016/j.cell.2011.06.051 · DOI · Paper page
- Mestdagh, 2009, A novel and universal method for microRNA RT-qPCR data normalization, Genome Biol., 10, R64, 10.1186/gb-2009-10-6-r64 · DOI · Paper page
- Nelson, 2007, A novel monoclonal antibody against human Argonaute proteins reveals unexpected characteristics of miRNAs in human blood cells, RNA, 13, 1787, 10.1261/rna.646007 · DOI · Paper page
- Nelson, 2008, MicroRNAs (miRNAs) in neurodegenerative diseases, Brain Pathol., 18, 130, 10.1111/j.1750-3639.2007.00120.x · DOI
- Nelson, 2008, Technical variables in high-throughput miRNA expression profiling: much work remains to be done, Biochim. Biophys. Acta, 1779, 758, 10.1016/j.bbagrm.2008.03.012 · DOI · Paper page
- Pandya, 2009, The optimal dosage and window of opportunity to maintain mitochondrial homeostasis following traumatic brain injury using the uncoupler FCCP, Exp. Neurol., 218, 381, 10.1016/j.expneurol.2009.05.023 · DOI
- Patel, 2009, Differential effects of the mitochondrial uncoupling agent, 2,4-dinitrophenol, or the nitroxide antioxidant, Tempol, on synaptic or nonsynaptic mitochondria after spinal cord injury, J. Neurosci. Res., 87, 130, 10.1002/jnr.21814 · DOI
- Quinn, 2011, A trio of microRNAs that control Toll-like receptor signalling, Int. Immunol., 23, 421, 10.1093/intimm/dxr034 · DOI · Paper page
- Raghupathi, 2004, Cell death mechanisms following traumatic brain injury, Brain Pathol., 14, 215, 10.1111/j.1750-3639.2004.tb00056.x · DOI
- Redell, 2009, Traumatic brain injury alters expression of hippocampal microRNAs: potential regulators of multiple pathophysiological processes, J. Neurosci. Res., 87, 1435, 10.1002/jnr.21945 · DOI · Paper page
- Redell, 2010, Human traumatic brain injury alters plasma microRNA levels, J. Neurotrauma, 27, 2147, 10.1089/neu.2010.1481 · DOI
- Rink, 1995, Evidence of apoptotic cell death after experimental traumatic brain injury in the rat, Am. J. Pathol., 147, 1575
- Rosenfeld, 2012, Early management of severe traumatic brain injury, Lancet, 380, 1088, 10.1016/S0140-6736(12)60864-2 · DOI
- Sabirzhanov, 2014, Downregulation of miR-23a and miR-27a following experimental traumatic brain injury induces neuronal cell death through activation of proapoptotic Bcl-2 proteins, J. Neurosci., 34, 10055, 10.1523/JNEUROSCI.1260-14.2014 · DOI
- Saraste, 1999, Oxidative phosphorylation at the fin de siecle, Science, 283, 1488, 10.1126/science.283.5407.1488 · DOI
- Seddiki, 2014, Role of miR-155 in the regulation of lymphocyte immune function and disease, Immunology, 142, 32, 10.1111/imm.12227 · DOI
- Singh, 2006, Time course of post-traumatic mitochondrial oxidative damage and dysfunction in a mouse model of focal traumatic brain injury: implications for neuroprotective therapy, J. Cereb. Blood Flow Metab., 26, 1407, 10.1038/sj.jcbfm.9600297 · DOI · Paper page
- Sripada, 2012, Systematic analysis of small RNAs associated with human mitochondria by deep sequencing: detailed analysis of mitochondrial associated miRNA, PLoS One, 7, e44873, 10.1371/journal.pone.0044873 · DOI
- Strickland, 2011, MicroRNA dysregulation following spinal cord contusion: implications for neural plasticity and repair, Neuroscience, 186, 146, 10.1016/j.neuroscience.2011.03.063 · DOI · Paper page
- Sullivan, 1999, Cyclosporin A attenuates acute mitochondrial dysfunction following traumatic brain injury, Exp. Neurol., 160, 226, 10.1006/exnr.1999.7197 · DOI
- Sullivan, 2002, Cytochrome c release and caspase activation after traumatic brain injury, Brain Res., 949, 88, 10.1016/S0006-8993(02)02968-2 · DOI · Paper page
- Sun, 2010, miR-223 and miR-142 attenuate hematopoietic cell proliferation, and miR-223 positively regulates miR-142 through LMO2 isoforms and CEBP-beta, Cell Res., 20, 1158, 10.1038/cr.2010.134 · DOI
- Sun, 2014, Expression profiling of microRNAs in hippocampus of rats following traumatic brain injury, J. Huazhong Univ. Sci. Technolog. Med. Sci., 34, 548, 10.1007/s11596-014-1313-1 · DOI
- Taibi, 2014, miR-223: an inflammatory oncomiR enters the cardiovascular field, Biochim. Biophys. Acta, 1842, 1001, 10.1016/j.bbadis.2014.03.005 · DOI
- Truettner, 2011, Therapeutic hypothermia alters microRNA responses to traumatic brain injury in rats, J. Cereb. Blood Flow Metab., 31, 1897, 10.1038/jcbfm.2011.33 · DOI
- Truettner, 2013, MicroRNA overexpression increases cortical neuronal vulnerability to injury, Brain Res., 1533, 122, 10.1016/j.brainres.2013.08.011 · DOI
- Vasilatou, 2010, The role of microRNAs in normal and malignant hematopoiesis, Eur. J. Haematol., 84, 1, 10.1111/j.1600-0609.2009.01348.x · DOI
- Vigorito, 2007, MicroRNA-155 regulates the generation of immunoglobulin class-switched plasma cells, Immunity, 27, 847, 10.1016/j.immuni.2007.10.009 · DOI
- Vigorito, 2013, miR-155: an ancient regulator of the immune system, Immunol. Rev., 253, 146, 10.1111/imr.12057 · DOI
- Wang, 2008, Focus on RNA isolation: obtaining RNA for microRNA (miRNA) expression profiling analyses of neural tissue, Biochim. Biophys. Acta, 1779, 749, 10.1016/j.bbagrm.2008.01.005 · DOI · Paper page
- Wang, 2008, The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of beta-site amyloid precursor protein-cleaving enzyme 1, J. Neurosci., 28, 1213, 10.1523/JNEUROSCI.5065-07.2008 · DOI · Paper page
- Wang, 2010, Anti-Argonaute RIP-Chip shows that miRNA transfections alter global patterns of mRNA recruitment to microribonucleoprotein complexes, RNA, 16, 394, 10.1261/rna.1905910 · DOI
- Xiao, 2007, MiR-150 controls B cell differentiation by targeting the transcription factor c-Myb, Cell, 131, 146, 10.1016/j.cell.2007.07.021 · DOI
- Yunta, 2012, MicroRNA dysregulation in the spinal cord following traumatic injury, PLoS One, 7, e34534, 10.1371/journal.pone.0034534 · DOI · Paper page
- Ziebell, 2010, Involvement of pro- and anti-inflammatory cytokines and chemokines in the pathophysiology of traumatic brain injury, Neurotherapeutics, 7, 22, 10.1016/j.nurt.2009.10.016 · DOI
Cited by
Sorted by citations
MiR-155: An Important Regulator of Neuroinflammation
Zingale, V. D., Gugliandolo, A., & Mazzon, E. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms23010090 · Cited by 163
Wang, W.-X., Prajapati, P., Nelson, P. T., & Springer, J. E. (2020) · Molecular Neurobiology · doi:10.1007/s12035-020-01937-y · Cited by 49
Self-citationAbsence of miRNA-146a Differentially Alters Microglia Function and Proteome
Martin, N. A., Hyrlov, K. H., Elkjaer, M. L., Thygesen, E. K., Wlodarczyk, A., Elbaek, K. J., Aboo, C., Okarmus, J., Benedikz, E., Reynolds, R., et al. (2020) · Frontiers in Immunology · doi:10.3389/fimmu.2020.01110 · Cited by 36
Potential Roles of microRNAs in the Regulation of Monoamine Oxidase A in the Brain
Higuchi, Y., Soga, T., & Parhar, I. S. (2018) · Frontiers in Molecular Neuroscience · doi:10.3389/fnmol.2018.00339 · Cited by 22
Metadata
- Authors
- Wang, W.-X., Visavadiya, N. P., Pandya, J. D., Nelson, P. T., Sullivan, P. G., & Springer, J. E.
- Venue
- Experimental Neurology
- Publisher
- Elsevier BV
- Published
- 2015-03
- Volume
- 265
- Pages
- 84-93
- ISSN
- 0014-4886
- PMC
- PMC4346439
- Cited by
- 134
- References
- 9
- Language
- en
- Funders
- Morton Cure Paralysis Fund
- Cardinal Hill Rehabilitation Hospital
- National Center for Advancing Translational Sciences (UT1TR000117)
- National Institutes of Health (UL1TR000117)
- PHS (NS085830, AG042419)
- KSCHIRT
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
