Horizontal transfer of antibiotic resistance genes in the human gut microbiome
Open accessAbstract
Infections caused by antibiotic-resistant bacteria are a major threat to public health. The pathogens causing these infections can acquire antibiotic resistance genes in a process termed horizontal gene transfer (HGT). HGT is a common event in the human gut microbiome, that is, the microbial ecosystem of the human intestinal tract. HGT in the gut microbiome can occur via different mechanisms of which transduction and conjugation have been best characterised. Novel bioinformatic tools and experimental approaches have been developed to determine the association of antibiotic resistance genes with their microbial hosts and to quantify the extent of HGT in the gut microbiome. Insights from studies into HGT in the gut microbiome may lead to the development of novel interventions to minimise the spread of antibiotic resistance genes among commensals and opportunistic pathogens.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The text we found for this paper looks like another document, so the self-check wasn’t run.
Cites
Diversity of the Human Intestinal Microbial Flora
Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E., & Relman, D. A. (2005) · Science · doi:10.1126/science.1110591 · Cited by 7,913 · see citing works
Human gut microbiome viewed across age and geography
Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., et al. (2012) · Nature · doi:10.1038/nature11053 · Cited by 7,815 · see citing works
CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes
Barrangou, R., Fremaux, C., Deveau, H., Richards, M., Boyaval, P., Moineau, S., Romero, D. A., & Horvath, P. (2007) · Science · doi:10.1126/science.1138140 · Cited by 6,304 · see citing works
Molecular mechanisms of antibiotic resistance
Blair, J. M. A., Webber, M. A., Baylay, A. J., Ogbolu, D. O., & Piddock, L. J. V. (2015) · Nature Reviews Microbiology · doi:10.1038/nrmicro3380 · Cited by 4,092 · see citing works
Cassini, A., Högberg, L. D., Plachouras, D., Quattrocchi, A., Hoxha, A., Simonsen, G. S., Colomb-Cotinat, M., Kretzschmar, M., Devleesschauwer, B., Cecchini, M., et al. (2018) · The Lancet Infectious Diseases · doi:10.1016/s1473-3099(18)30605-4 · Cited by 2,951 · see citing works
Shotgun metagenomics, from sampling to analysis
Quince, C., Walker, A. W., Simpson, J. T., Loman, N. J., & Segata, N. (2017) · Nature Biotechnology · doi:10.1038/nbt.3935 · Cited by 2,202 · see citing works
Dissemination of Antimicrobial Resistance in Microbial Ecosystems through Horizontal Gene Transfer
von Wintersdorff, C. J. H., Penders, J., van Niekerk, J. M., Mills, N. D., Majumder, S., van Alphen, L. B., Savelkoul, P. H. M., & Wolffs, P. F. G. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00173 · Cited by 1,707 · see citing works
The shared antibiotic resistome of soil bacteria and human pathogens
Forsberg, K. J., Reyes, A., Wang, B., Selleck, E. M., Sommer, M. O. A., & Dantas, G. (2012) · Science · doi:10.1126/science.1220761 · Cited by 1,650 · see citing works
The vocabulary of microbiome research: a proposal
Marchesi, J., & Ravel, J. (2015) · Microbiome · doi:10.1186/s40168-015-0094-5 · Cited by 1,016 · see citing works
Antibiotic-Resistance Genes in Waste Water
Karkman, A., Thùy, T., Walsh, F., & Virta, M. (2017) · Trends in Microbiology · doi:10.1016/j.tim.2017.09.005 · Cited by 964 · see citing works
The gut microbiome: Relationships with disease and opportunities for therapy
Durack, J., & Lynch, S. V. (2018) · The Journal of Experimental Medicine · doi:10.1084/jem.20180448 · Cited by 955 · see citing works
What is a resistance gene? Ranking risk in resistomes
Martínez, J., Coque, T., & Baquero, F. (2014) · Nature Reviews Microbiology · doi:10.1038/nrmicro3399 · Cited by 938 · see citing works
Culturing the human microbiota and culturomics
Lagier, J., Dubourg, G., Million, M., Cadoret, F., Bilen, M., Fenollar, F., Levasseur, A., Rolain, J., Fournier, P., & Raoult, D. (2018) · Nature Reviews Microbiology · doi:10.1038/s41579-018-0041-0 · Cited by 882 · see citing works
Pal, C., Bengtsson‐Palme, J., Kristiansson, E., & Larsson, D. G. J. (2015) · BMC Genomics · doi:10.1186/s12864-015-2153-5 · Cited by 833 · see citing works
Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota
Hu, Y., Yang, X., Qin, J., Lü, N., Cheng, G., Wu, N., Pan, Y., Li, J., Zhu, L., Wang, X., et al. (2013) · Nature Communications · doi:10.1038/ncomms3151 · Cited by 786 · see citing works
DNA uptake during bacterial transformation
Chen, I., & Dubnau, D. A. (2004) · Nature Reviews Microbiology · doi:10.1038/nrmicro844 · Cited by 774 · see citing works
Bacteriophages of the Human Gut: The “Known Unknown” of the Microbiome
Shkoporov, A. N., & Hill, C. (2019) · Cell Host & Microbe · doi:10.1016/j.chom.2019.01.017 · Cited by 760 · see citing works
Bacterial transformation: distribution, shared mechanisms and divergent control
Johnston, C., Martin, B., Fichant, G. A., Polard, P., & Claverys, J. (2014) · Nature Reviews Microbiology · doi:10.1038/nrmicro3199 · Cited by 737 · see citing works
Outer Membrane Vesicles of a Human Commensal Mediate Immune Regulation and Disease Protection
Shen, Y., Torchia, M. L. G., Lawson, G. W., Karp, C. L., Ashwell, J. D., & Mazmanian, S. K. (2012) · Cell Host & Microbe · doi:10.1016/j.chom.2012.08.004 · Cited by 714 · see citing works
Gorrie, C. L., Mirčeta, M., Wick, R. R., Edwards, D., Thomson, N. R., Strugnell, R. A., Pratt, N. F., Garlick, J. S., Watson, K., Pilcher, D. V., et al. (2017) · Clinical Infectious Diseases · doi:10.1093/cid/cix270 · Cited by 581 · see citing works
Gut Microbiota and Colonization Resistance against Bacterial Enteric Infection
Ducarmon, Q. R., Zwittink, R. D., Hornung, B. V. H., van Schaik, W., Young, V. B., & Kuijper, E. J. (2019) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00007-19 · Cited by 566 · see citing works
Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome
Modi, S. R., Lee, H. H., Spina, C. S., & Collins, J. J. (2013) · Nature · doi:10.1038/nature12212 · Cited by 542 · see citing works
Shoemaker, N. B., Vlamakis, H. C., Hayes, K., & Salyers, A. A. (2001) · Applied and Environmental Microbiology · doi:10.1128/aem.67.2.561-568.2001 · Cited by 529 · see citing works
Huddleston, J. R. (2014) · Infection and Drug Resistance · doi:10.2147/idr.s48820 · Cited by 515 · see citing works
Extracellular membrane vesicles in the three domains of life and beyond
Gill, S., Catchpole, R. J., & Forterre, P. (2018) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuy042 · Cited by 500 · see citing works
Evolution of Plasmid-Mediated Antibiotic Resistance in the Clinical Context
Millán, Á. S. (2018) · Trends in Microbiology · doi:10.1016/j.tim.2018.06.007 · Cited by 485 · see citing works
Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community
Klümper, U., Riber, L., Dechesne, A., Sannazzaro, A. I., Hansen, L. H., Sørensen, S. J., & Smets, B. F. (2014) · The ISME Journal · doi:10.1038/ismej.2014.191 · Cited by 460 · see citing works
Che, Y., Xia, Y., Liu, L., Li, A.-D., Yang, Y., & Zhang, T. (2019) · Microbiome · doi:10.1186/s40168-019-0663-0 · Cited by 422 · see citing works
Antimicrobial Resistance in Agriculture
Thanner, S., Drissner, D., & Walsh, F. (2016) · mBio · doi:10.1128/mbio.02227-15 · Cited by 393 · see citing works
Global Emergence and Dissemination of Enterococci as Nosocomial Pathogens: Attack of the Clones?
Prieto, A. M. G., van Schaik, W., Rogers, M. R. C., Coque, T. M., Baquero, F., Corander, J., & Willems, R. J. L. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00788 · Cited by 386 · see citing works
van Schaik, W. (2015) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2014.0087 · Cited by 364 · see citing works
Rumbo, C., Fernández-Moreira, E., Merino, M., Poza, M., Mendez, J. A., Soares, N. C., Mosquera, A., Cháves, F., & Bou, G. (2011) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00929-10 · Cited by 353 · see citing works
Vesicle-Mediated Transfer of Virulence Genes from Escherichia coli O157:H7 to Other Enteric Bacteria
Yaron, S., Kolling, G. L., Simon, L. D., & Matthews, K. R. (2000) · Applied and Environmental Microbiology · doi:10.1128/aem.66.10.4414-4420.2000 · Cited by 338 · see citing works
Epidemiology and burden of multidrug-resistant bacterial infection in a developing country
Lim, C., Takahashi, E., Hongsuwan, M., Wuthiekanun, V., Thamlikitkul, V., Hinjoy, S., Day, N., Peacock, S. J., & Limmathurotsakul, D. (2016) · eLife · doi:10.7554/elife.18082 · Cited by 313 · see citing works
Towards an integrated model of bacterial conjugation
Cabezón, E., Ripoll‐Rozada, J., Peña, A., de la Cruz, F., & Aréchaga, I. (2014) · FEMS Microbiology Reviews · doi:10.1111/1574-6976.12085 · Cited by 288 · see citing works
Linking the resistome and plasmidome to the microbiome
Stalder, T., Press, M. O., Sullivan, S. T., Liachko, I., & Top, E. M. (2019) · The ISME Journal · doi:10.1038/s41396-019-0446-4 · Cited by 288 · see citing works
Genome hypermobility by lateral transduction
Chen, J. Y.-S., Quiles‐Puchalt, N., Chiang, Y. N., Bacigalupe, R., Fillol-Salom, A., Chee, M. S. J., Fitzgerald, J. R., & Penadés, J. R. (2018) · Science · doi:10.1126/science.aat5867 · Cited by 280 · see citing works
Outer-Inner Membrane Vesicles Naturally Secreted by Gram-Negative Pathogenic Bacteria
Pérez-Cruz, C., Delgado, L., López‐Iglesias, C., & Mercadé, E. (2015) · PLoS ONE · doi:10.1371/journal.pone.0116896 · Cited by 277 · see citing works
Molecular mechanisms of CRISPR–Cas spacer acquisition
McGinn, J., & Marraffini, L. A. (2018) · Nature Reviews Microbiology · doi:10.1038/s41579-018-0071-7 · Cited by 257 · see citing works
Lester, C. H., Frimodt‐Møller, N., Sørensen, T. L., Monnet, D. L., & Hammerum, A. M. (2006) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.50.2.596-599.2006 · Cited by 238 · see citing works
Host range of antibiotic resistance genes in wastewater treatment plant influent and effluent
Hultman, J., Tamminen, M. V., Pärnänen, K. M. M., Cairns, J., Karkman, A., & Virta, M. (2018) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiy038 · Cited by 238 · see citing works
The Mortality Burden of Multidrug-resistant Pathogens in India: A Retrospective, Observational Study
Gandra, S., Tseng, K. K., Arora, A., Bhowmik, B., Robinson, M. L., Panigrahi, B. P., Laxminarayan, R., & Klein, E. Y. (2018) · Clinical Infectious Diseases · doi:10.1093/cid/ciy955 · Cited by 238 · see citing works
Spencer, S. J., Tamminen, M. V., Preheim, S. P., Guo, M., Briggs, A. W., Brito, I., Weitz, D. A., Pitkänen, L. K., Vigneault, F., Virta, M., et al. (2015) · The ISME Journal · doi:10.1038/ismej.2015.124 · Cited by 233 · see citing works
Stewardson, A. J., Marimuthu, K., Sengupta, S., Allignol, A., El-Bouseary, M. M., Carvalho, M. J., Hassan, B., Delgado-Ramírez, M. A., Arora, A., Bagga, R., et al. (2019) · The Lancet Infectious Diseases · doi:10.1016/s1473-3099(18)30792-8 · Cited by 219 · see citing works
Genetic transduction by phages and chromosomal islands: The new and noncanonical
Chiang, Y. N., Penadés, J. R., & Chen, J. Y.-S. (2019) · PLoS Pathogens · doi:10.1371/journal.ppat.1007878 · Cited by 215 · see citing works
Prediction of the intestinal resistome by a three-dimensional structure-based method
Ruppé, É., Ghozlane, A., Tap, J., Pons, N., Alvarez, A., Maziers, N., Cuesta, T., Hernando‐Amado, S., Clares, I., Martínez, J. L., et al. (2018) · Nature Microbiology · doi:10.1038/s41564-018-0292-6 · Cited by 199 · see citing works
Viruses as key reservoirs of antibiotic resistance genes in the environment
Debroas, D., & Siguret, C. (2019) · The ISME Journal · doi:10.1038/s41396-019-0478-9 · Cited by 190 · see citing works
Safety considerations of DNA in food
Jonas, D. A., Elmadfa, I., Engel, K.-H., Heller, K. J., Kozianowski, G., König, A., Müller, D., Narbonne, J. F., Wackernagel, W., & Kleiner, J. (2001) · Annals of Nutrition and Metabolism · doi:10.1159/000046734 · Cited by 187 · see citing works
Smith, H. W. (1969) · The Lancet · doi:10.1016/s0140-6736(69)92164-3 · Cited by 186 · see citing works
Natural competence for transformation
Blokesch, M. (2016) · Current Biology · doi:10.1016/j.cub.2016.08.058 · Cited by 176 · see citing works
Viral communities of the human gut: metagenomic analysis of composition and dynamics
Aggarwala, V., Liang, G., & Bushman, F. D. (2017) · Mobile DNA · doi:10.1186/s13100-017-0095-y · Cited by 175 · see citing works
Horizontal gene transfer overrides mutation in Escherichia coli colonizing the mammalian gut
Frazão, N., Sousa, A., Lässig, M., & Gordo, I. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1906958116 · Cited by 173 · see citing works
Conjugative Delivery of CRISPR-Cas9 for the Selective Depletion of Antibiotic-Resistant Enterococci
Rodrigues, M., McBride, S. W., Hullahalli, K., Palmer, K. L., & Duerkop, B. A. (2019) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.01454-19 · Cited by 173 · see citing works
Dunn, S. J., Connor, C. H., & McNally, A. (2019) · Current Opinion in Microbiology · doi:10.1016/j.mib.2019.06.004 · Cited by 172 · see citing works
Marbouty, M., Cournac, A., Flot, J., Marie-Nelly, H., Mozziconacci, J., & Koszul, R. (2014) · eLife · doi:10.7554/elife.03318 · Cited by 160 · see citing works
Song, W.-Z., Wemheuer, B., Zhang, S., Steensen, K., & Thomas, T. (2019) · Microbiome · doi:10.1186/s40168-019-0649-y · Cited by 160 · see citing works
Yaffe, E., & Relman, D. A. (2019) · Nature Microbiology · doi:10.1038/s41564-019-0625-0 · Cited by 157 · see citing works
Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation
Beaulaurier, J., Zhu, S., Deikus, G. Y., Mogno, I., Zhang, X., Davis‐Richardson, A. G., Canepa, R., Triplett, E. W., Faith, J. J., Sebra, R., et al. (2017) · Nature Biotechnology · doi:10.1038/nbt.4037 · Cited by 154 · see citing works
Identification and reconstruction of novel antibiotic resistance genes from metagenomes
Berglund, F., Österlund, T., Boulund, F., Marathe, N. P., Larsson, D. G. J., & Kristiansson, E. (2019) · Microbiome · doi:10.1186/s40168-019-0670-1 · Cited by 140 · see citing works
Transfer of Carbapenem-Resistant Plasmid fromKlebsiella pneumoniaeST258 toEscherichia coliin Patient
Goren, M. G., Carmeli, Y., Schwaber, M. J., Chmelnitsky, I., Schechner, V., & Navon‐Venezia, S. (2010) · Emerging infectious diseases · doi:10.3201/eid1606.091671 · Cited by 138 · see citing works
Structural biology of the Gram-negative bacterial conjugation systems
Ilangovan, A., Connery, S., & Waksman, G. (2015) · Trends in Microbiology · doi:10.1016/j.tim.2015.02.012 · Cited by 133 · see citing works
Marbouty, M., Baudry, L., Cournac, A., & Koszul, R. (2017) · Science Advances · doi:10.1126/sciadv.1602105 · Cited by 133 · see citing works
Diverse mobilization strategies facilitate transfer of non-conjugative mobile genetic elements
Ramsay, J. P., & Firth, N. (2017) · Current Opinion in Microbiology · doi:10.1016/j.mib.2017.03.003 · Cited by 132 · see citing works
Bickhart, D. M., Watson, M., Koren, S., Panke-Buisse, K., Cersosimo, L. M., Press, M. O., Tassell, C. P. V., Kessel, J. A. S. V., Haley, B. J., Kim, S. W., et al. (2019) · Genome biology · doi:10.1186/s13059-019-1760-x · Cited by 131 · see citing works
Pull in and Push Out: Mechanisms of Horizontal Gene Transfer in Bacteria
Sun, D. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02154 · Cited by 130 · see citing works
Enterococcal vanB resistance locus in anaerobic bacteria in human faeces
Stinear, T. P., Olden, D., Johnson, P. D. R., Davies, J. K., & Grayson, M. L. (2001) · The Lancet · doi:10.1016/s0140-6736(00)04206-9 · Cited by 127 · see citing works
Stentz, R., Horn, N., Cross, K. L., Salt, L. J., Brearley, C. A., Livermore, D. M., & Carding, S. R. (2014) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dku466 · Cited by 124 · see citing works
Launay, A., Ballard, S. A., Johnson, P. D. R., Grayson, M. L., & Lambert, T. (2006) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.50.3.1054-1062.2006 · Cited by 113 · see citing works
Klieve, A. V., Yokoyama, M. T., Forster, R. J., Ouwerkerk, D., Bain, P. A., & Mawhinney, E. L. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.8.4248-4253.2005 · Cited by 106 · see citing works
Raven, K. E., Gouliouris, T., Brodrick, H. J., Coll, F., Brown, N. M., Reynolds, R., Reuter, S., Török, M. E., Parkhill, J., & Peacock, S. J. (2017) · Clinical Infectious Diseases · doi:10.1093/cid/ciw872 · Cited by 104 · see citing works
Press, M. O., Wiser, A. H., Kronenberg, Z. N., Langford, K. W., Shakya, M., Lo, C.-C., Mueller, K. A., Sullivan, S. T., Chain, P. S. G., & Liachko, I. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/198713 · Cited by 103 · see citing works
In Vivo Horizontal Gene Transfer of the Carbapenemase OXA-48 During a Nosocomial Outbreak
Göttig, S., Gruber, T. M., Stecher, B., Wichelhaus, T. A., & Kempf, V. A. J. (2015) · Clinical Infectious Diseases · doi:10.1093/cid/civ191 · Cited by 98 · see citing works
Colonizing opportunistic pathogens (COPs): The beasts in all of us
Price, L. B., Hungate, B. A., Koch, B. J., Davis, G. S., & Liu, C. M. (2017) · PLoS Pathogens · doi:10.1371/journal.ppat.1006369 · Cited by 95 · see citing works
Hasegawa, H., Suzuki, É., & Maeda, S. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02365 · Cited by 86 · see citing works
Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes
Douglas, G. M., & Langille, M. G. I. (2019) · Genome Biology and Evolution · doi:10.1093/gbe/evz184 · Cited by 79 · see citing works
Munck, C., Sheth, R. U., Freedberg, D. E., & Wang, H. H. (2020) · Nature Communications · doi:10.1038/s41467-019-14012-5 · Cited by 78 · see citing works
Dehoux, P., Marvaud, J., Abouelleil, A., Earl, A. M., Lambert, T., & Dauga, C. (2016) · BMC Genomics · doi:10.1186/s12864-016-3152-x · Cited by 72 · see citing works
Porse, A., Gumpert, H., Kubicek-Sutherland, J. Z., Karami, N., Adlerberth, I., Wold, A. E., Andersson, D. I., & Sommer, M. O. A. (2017) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2017.00126 · Cited by 69 · see citing works
Sitaraman, R. (2018) · Microbiome · doi:10.1186/s40168-018-0551-z · Cited by 67 · see citing works
Biochemical mechanisms determine the functional compatibility of heterologous genes
Porse, A., Schou, T. S., Munck, C., Ellabaan, M. M. H., & Sommer, M. O. A. (2018) · Nature Communications · doi:10.1038/s41467-018-02944-3 · Cited by 66 · see citing works
Wilcks, A., van Hoek, A. H. A. M., Joosten, R. G., Jacobsen, B., & Aarts, H. J. M. (2003) · Food and Chemical Toxicology · doi:10.1016/j.fct.2003.10.013 · Cited by 55 · see citing works
MetaCherchant: analyzing genomic context of antibiotic resistance genes in gut microbiota
Olekhnovich, E. I., Vasilyev, A. T., Игоревич, У. В., Kostryukova, E., & Tyakht, A. (2017) · Bioinformatics · doi:10.1093/bioinformatics/btx681 · Cited by 44 · see citing works
Fernández‐Orth, D., Miró, E., Brown-Jaque, M., Rodríguez‐Rubio, L., Espinal, P., Rodríguez-Navarro, J., González‐López, J. J., Muniesa, M., & Navarro, F. (2018) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dky540 · Cited by 39 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Chaturvedi, P., Shukla, P., Giri, B. S., Chowdhary, P., Chandra, R., Gupta, P., & Pandey, A. (2021) · Environmental Research · doi:10.1016/j.envres.2020.110664 · Cited by 718 · see citing works
Emerging issues in probiotic safety: 2023 perspectives
Merenstein, D., Pot, B., Leyer, G., Ouwehand, A. C., Preidis, G. A., Elkins, C. A., Hill, C., Lewis, Z. T., Shane, A. L., Zmora, N., et al. (2023) · Gut Microbes · doi:10.1080/19490976.2023.2185034 · Cited by 481 · see citing works
Li, S., Wu, Y., Zheng, H., Li, H., Zheng, Y., Nan, J., Ma, J., Nagarajan, D., & Chang, J. (2022) · Chemosphere · doi:10.1016/j.chemosphere.2022.136977 · Cited by 278 · see citing works
Feng, G., Huang, H., & Chen, Y. (2021) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2021.126602 · Cited by 251 · see citing works
The spread of antibiotic resistance to humans and potential protection strategies
Ding, D., Wang, B., Zhang, X., Zhang, J., Zhang, H., Liu, X., Gao, Z., & Yu, Z. (2023) · Ecotoxicology and Environmental Safety · doi:10.1016/j.ecoenv.2023.114734 · Cited by 232 · see citing works
Convergence of Biofilm Formation and Antibiotic Resistance in Acinetobacter baumannii Infection
Roy, S., Chowdhury, G., Mukhopadhyay, A. K., Dutta, S., & Basu, S. (2022) · Frontiers in Medicine · doi:10.3389/fmed.2022.793615 · Cited by 225 · see citing works
Yuan, X., Lv, Z., Zhang, Z., Han, Y., Liu, Z., & Zhang, H. (2023) · Toxics · doi:10.3390/toxics11050420 · Cited by 208 · see citing works
Antibiotic-induced gut dysbiosis and barrier disruption and the potential protective strategies
Duan, H., Yu, L., Tian, F., Zhai, Q., Fan, L., & Chen, W. (2020) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2020.1843396 · Cited by 215 · see citing works
The Spread of Antibiotic Resistance Genes In Vivo Model
Tao, S., Chen, H., Li, N., Wang, T., & Liang, W. (2022) · Canadian Journal of Infectious Diseases and Medical Microbiology · doi:10.1155/2022/3348695 · Cited by 206 · see citing works
Liu, C., Tan, L., Zhang, L., Tian, W., & Ma, L. (2021) · Frontiers in Environmental Science · doi:10.3389/fenvs.2021.692298 · Cited by 183 · see citing works
Ghazal, H. S., Koumaki, E., Hoslett, J., Malamis, S., Katsou, E., Barceló, ., & Jouhara, H. (2022) · Journal of Cleaner Production · doi:10.1016/j.jclepro.2022.132079 · Cited by 174 · see citing works
Jiang, Q., Feng, M., Ye, C., & Yu, X. (2021) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2021.150568 · Cited by 163 · see citing works
Antimicrobial Resistance in Aquaculture: Risk Mitigation within the One Health Context
Milijašević, M., Vesković-Moračanin, S. M., Milijašević, J. B., Petrović, J., & Nastasijević, I. (2024) · Foods · doi:10.3390/foods13152448 · Cited by 154 · see citing works
A framework for identifying the recent origins of mobile antibiotic resistance genes
Ebmeyer, S., Kristiansson, E., & Larsson, D. G. J. (2021) · Communications Biology · doi:10.1038/s42003-020-01545-5 · Cited by 144 · see citing works
Considerations for determining safety of probiotics: A USP perspective
Roe, A. L., Boyte, M.-E., Elkins, C. A., Goldman, V. S., Heimbach, J., Madden, E., Oketch-Rabah, H., Sanders, M. E., Sirois, J., & Smith, A. (2022) · Regulatory Toxicology and Pharmacology · doi:10.1016/j.yrtph.2022.105266 · Cited by 136 · see citing works
Guo, H., Tong, Y., Cheng, J., Abbas, Z., Li, Z., Wang, J., Zhou, Y., Si, D., & Zhang, R. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23031241 · Cited by 127 · see citing works
Nji, E., Kazibwe, J., Hambridge, T., Joko, C. A., Larbi, A. A., Damptey, L., Nkansa-Gyamfi, N. A., Lundborg, C. S., & Lien, L. T. Q. (2021) · Scientific Reports · doi:10.1038/s41598-021-82693-4 · Cited by 122 · see citing works
Antibiotic resistance in the commensal human gut microbiota
Lamberte, L. E., & van Schaik, W. (2022) · Current Opinion in Microbiology · doi:10.1016/j.mib.2022.102150 · Cited by 114 · see citing works
Self-citationda Silva, T. F., Glória, R. D. A., Americo, M. F., Freitas, A. D. S., de Jesus, L. C. L., Barroso, F. A. L., Laguna, J. G., Coelho-Rocha, N. D., Tavares, L. M., le Loir, Y., et al. (2024) · Probiotics and Antimicrobial Proteins · doi:10.1007/s12602-024-10247-x · Cited by 117 · see citing works
Qiu, T., Huo, L., Guo, Y., Gao, M., Wang, G., Hu, D., Li, C., Wang, Z., Liu, G., & Wang, X. (2022) · Environmental Microbiome · doi:10.1186/s40793-022-00437-x · Cited by 113 · see citing works
Wei, Z., Feng, K., Wang, Z., Zhang, Y., Yang, M., Zhu, Y., Virta, M., & Deng, Y. (2021) · Environmental Science & Technology · doi:10.1021/acs.est.1c01250 · Cited by 102 · see citing works
Nkoh, J. N., Shang, C., Okeke, E. S., Ejeromedoghene, O., Oderinde, O., Etafo, N. O., Mgbechidinma, C. L., Bakare, O. C., & Meugang, E. F. (2024) · Journal of Environmental Management · doi:10.1016/j.jenvman.2024.120312 · Cited by 95 · see citing works
Microbiome Dynamics: A Paradigm Shift in Combatting Infectious Diseases
Kamel, M. S., Aleya, S., Alsubih, M., & Aleya, L. (2024) · Journal of Personalized Medicine · doi:10.3390/jpm14020217 · Cited by 96 · see citing works
Shining Light on Human Gut Bacteriophages
Guerin, E., & Hill, C. (2020) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2020.00481 · Cited by 84 · see citing works
Li, S., Duan, G., Xi, Y., Chu, Y., Li, F., & Ho, S. (2023) · Environmental Pollution · doi:10.1016/j.envpol.2023.123285 · Cited by 87 · see citing works
Emergence of environmental antibiotic resistance: Mechanism, monitoring and management
Bobate, S., Mahalle, S., Dafale, N. A., & Bajaj, A. (2023) · Environmental Advances · doi:10.1016/j.envadv.2023.100409 · Cited by 88 · see citing works
Microbial collaborations and conflicts: unraveling interactions in the gut ecosystem
Wang, S., Mu, L., Yu, C. H. A., He, Y., Hu, X., Jiao, Y., Xu, Z., You, S., Liu, S.-L., & Bao, H. (2023) · Gut Microbes · doi:10.1080/19490976.2023.2296603 · Cited by 86 · see citing works
Nisa, M., Dar, R. A., Fomda, B. A., & Nazir, R. (2023) · Food Control · doi:10.1016/j.foodcont.2023.109710 · Cited by 79 · see citing works
Augmented dissemination of antibiotic resistance elicited by non-antibiotic factors
Zhu, S., Yang, B., Wang, Z., & Liu, Y. (2023) · Ecotoxicology and Environmental Safety · doi:10.1016/j.ecoenv.2023.115124 · Cited by 76 · see citing works
Wang, W., Weng, Y. Z., Luo, T., Wang, Q., Yang, G., & Jin, Y. (2023) · Toxics · doi:10.3390/toxics11020185 · Cited by 74 · see citing works
Microbiome as an immune regulator in health, disease, and therapeutics
Juarez, V. M., Montalbine, A. N., & Singh, A. K. (2022) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2022.114400 · Cited by 76 · see citing works
Tan, R., Jin, M., Shao, Y., Yin, J., Li, H., Chen, T., Shi, D., Zhou, S., Lǐ, J., & Yang, D. (2022) · Gut Microbes · doi:10.1080/19490976.2021.2022442 · Cited by 70 · see citing works
Huang, H., Feng, G., Wang, M., Liu, C., Wu, Y., Dong, L., Feng, L., Zheng, X., & Chen, Y. (2022) · Environmental Science & Technology · doi:10.1021/acs.est.2c01889 · Cited by 72 · see citing works
Li, Z., Gao, J., Guo, Y., Cui, Y., Wang, Y., Duan, W., & Wu, Z. (2021) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2021.126942 · Cited by 64 · see citing works
Exploring the role of gut microbiota in antibiotic resistance and prevention
Dongre, D. S., Saha, U. B., & Saroj, S. D. (2025) · Annals of Medicine · doi:10.1080/07853890.2025.2478317 · Cited by 66 · see citing works
Kittredge, H. A., Dougherty, K. M., & Evans, S. E. (2022) · Applied and Environmental Microbiology · doi:10.1128/aem.02280-21 · Cited by 65 · see citing works
Chlorination-induced spread of antibiotic resistance genes in drinking water systems
Zhao, W., Hou, Y., Wei, L., Wei, W., Zhang, K., Duan, H., & Ni, B. (2025) · Water Research · doi:10.1016/j.watres.2025.123092 · Cited by 63 · see citing works
Horizontal gene transfer and ecological interactions jointly control microbiome stability
Coyte, K. Z., Stevenson, C., Cg, K., Harrison, E., Hall, J. P. J., & Brockhurst, M. A. (2022) · PLoS Biology · doi:10.1371/journal.pbio.3001847 · Cited by 64 · see citing works
Gut health modulation through phytogenics in poultry: mechanisms, benefits, and applications
Oni, A. I., & Oke, O. E. (2025) · Frontiers in Veterinary Science · doi:10.3389/fvets.2025.1616734 · Cited by 62 · see citing works
Benler, S., Faure, G., Tran, H.-A., Shmakov, S., Zheng, F., & Koonin, E. (2021) · mBio · doi:10.1128/mbio.02938-21 · Cited by 61 · see citing works
Yu, Z., Henderson, I. R., & Guo, J. (2022) · Gut Microbes · doi:10.1080/19490976.2022.2157698 · Cited by 58 · see citing works
Gauge your phage: benchmarking of bacteriophage identification tools in metagenomic sequencing data
Ho, S. F. S., Wheeler, N. E., Millard, A. D., & van Schaik, W. (2023) · Microbiome · doi:10.1186/s40168-023-01533-x · Cited by 58 · see citing works
Gain and loss of antibiotic resistant genes in multidrug resistant bacteria: One Health perspective
Kim, M.-S., Park, J.-E., Kang, M., Yang, J.-H., & Park, W. (2021) · The Journal of Microbiology · doi:10.1007/s12275-021-1085-9 · Cited by 57 · see citing works
Chu, V. T., Glascock, A. L., Donnell, D. J., Grabow, C., Brown, C., Ward, R., Love, C., Kalantar, K., Cohen, S. E., Cannon, C. A., et al. (2024) · Nature Medicine · doi:10.1038/s41591-024-03274-2 · Cited by 57 · see citing works
Tawfick, M. M., Elshamy, A. A., Mohamed, K. T., & Menofy, N. G. E. (2022) · Infection and Drug Resistance · doi:10.2147/idr.s354884 · Cited by 57 · see citing works
Vivekanandan, K., Kumar, P. V., Jaysree, R. C., & Rajeshwari, T. (2025) · Global Medical Genetics · doi:10.1016/j.gmg.2025.100042 · Cited by 58 · see citing works
James, C., DIXON, R. A., Talbot, L., James, S. J., Williams, N. J., & Onarinde, B. A. (2021) · Antibiotics · doi:10.3390/antibiotics10121440 · Cited by 51 · see citing works
Approaches for characterizing and tracking hospital-associated multidrug-resistant bacteria
Blake, K. S., Choi, J., & Dantas, G. A. (2021) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-020-03717-2 · Cited by 47 · see citing works
Complexity of antibiotic resistance and its impact on gut microbiota dynamics
Shayista, H., Prasad, M. N. N., Raj, S. N., Prasad, A., Lakshmi, S. J., Ranjini, H. K., Manju, K. G., Ravikumara, Chouhan, R. S., Khohlova, O. Y., et al. (2024) · Engineering Microbiology · doi:10.1016/j.engmic.2024.100187 · Cited by 47 · see citing works
Bombaywala, S., Purohit, H. J., & Dafale, N. A. (2021) · Journal of Environmental Management · doi:10.1016/j.jenvman.2021.113315 · Cited by 47 · see citing works
Liu, M., Guo, H., Gao, J., Zhu, K., Guo, L. J., Liu, B.-S., Zhang, N., Jiang, S., & Zhang, D. (2022) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2022.159180 · Cited by 46 · see citing works
Global perspectives on residual antibiotics: environmental challenges and trends
Thakur, R., Singh, A., Dhanwar, R. S., Kadam, S., Waghmare, U., Lodha, T. D., Lopes, B. S., & Prakash, O. (2025) · Discover Sustainability · doi:10.1007/s43621-025-01048-5 · Cited by 45 · see citing works
Ecology of the respiratory tract microbiome
Pérez‐Cobas, A. E., Rodríguez-Beltrán, J., Baquero, F., & Coque, T. M. (2023) · Trends in Microbiology · doi:10.1016/j.tim.2023.04.006 · Cited by 44 · see citing works
Hyun, J. H., Lee, S. K., Cheon, J. H., Yong, D., Koh, H., Kang, Y., Kim, M. H., Sohn, Y., Cho, Y., Baek, Y. J., et al. (2022) · Antimicrobial Resistance and Infection Control · doi:10.1186/s13756-022-01064-4 · Cited by 44 · see citing works
The co‐occurrence of antibiotic resistance genes between dogs and their owners in families
Zhao, R., Hao, J., Yang, J., Tong, C., Xie, L., Xiao, D., Zeng, Z., & Xiong, W. (2022) · iMeta · doi:10.1002/imt2.21 · Cited by 44 · see citing works
Understanding Horizontal Gene Transfer network in human gut microbiota
Li, C., Chen, J.-X., & Li, S.-C. (2020) · Gut Pathogens · doi:10.1186/s13099-020-00370-9 · Cited by 40 · see citing works
Blanco‐Picazo, P., Morales-Cortés, S., Ramos‐Barbero, M. D., García‐Aljaro, C., Rodríguez‐Rubio, L., & Muniesa, M. (2022) · The ISME Journal · doi:10.1038/s41396-022-01338-0 · Cited by 43 · see citing works
Gwenzi, W. (2020) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2020.141120 · Cited by 41 · see citing works
Xu, Z., Wu, X., Zhang, J., Cheng, P., Xu, Z., Sun, W., Zhong, Y., Wang, Y., Yu, G., & Liu, H. (2022) · Environmental Pollution · doi:10.1016/j.envpol.2022.120845 · Cited by 41 · see citing works
A novel therapeutic concern: Antibiotic resistance genes in common chronic diseases
Pan, X., Zhou, Z., Liu, B., & Wu, Z. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.1037389 · Cited by 40 · see citing works
The Impact of Non-Pathogenic Bacteria on the Spread of Virulence and Resistance Genes
Dionísio, F., Domingues, C. P. F., Rebelo, J. S., Monteiro, F., & Nogueira, T. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24031967 · Cited by 38 · see citing works
Dissecting microbial communities with single-cell transcriptome analysis
Pountain, A. W., & Yanai, I. (2025) · Science · doi:10.1126/science.adp6252 · Cited by 37 · see citing works
Wu, S., Wu, Y., Cao, B., Huang, Q., & Cai, P. (2021) · Critical Reviews in Environmental Science and Technology · doi:10.1080/10643389.2021.1892015 · Cited by 37 · see citing works
Kiu, R., Darby, E. M., Alcon-Giner, C., Acuna-Gonzalez, A., Camargo, A., Lamberte, L. E., Phillips, S., Sim, K., Shaw, A. G., Clarke, P., et al. (2025) · Nature communications · doi:10.1038/s41467-025-62584-2 · Cited by 36 · see citing works
“Itisimportanttonotethatourgenomicanalysis indicated only a weakcorrelation between overallARG abundanceand plasmid replicon count, suggesting that plasmids are not the sole contributors to ARG dissemination, and alternative routes of HGT are likely driving ARG spread 50 .”
Self-citationAntimicrobial peptide production in response to gut microbiota imbalance
Cardoso, M. H. E. S., Meneguetti, B. T., Oliveira-Júnior, N. G., Macedo, M. L. R., & Franco, O. L. (2022) · Peptides · doi:10.1016/j.peptides.2022.170865 · Cited by 36 · see citing works
Recent advances in phage defense systems and potential overcoming strategies
Yuan, X., Huang, Z., Zhu, Z., Zhang, J., Wu, Q., Xue, L., Wang, J., & Ding, Y. (2023) · Biotechnology Advances · doi:10.1016/j.biotechadv.2023.108152 · Cited by 35 · see citing works
Alav, I., & Buckner, M. M. C. (2023) · Critical Reviews in Microbiology · doi:10.1080/1040841x.2023.2233603 · Cited by 38 · see citing works
Private and well drinking water are reservoirs for antimicrobial resistant bacteria
Alawi, M., Smyth, C., Drissner, D., Zimmerer, A., Leupold, D., Müller, D., Thùy, T., Velasco‐Torrijos, T., & Walsh, F. (2024) · npj Antimicrobials and Resistance · doi:10.1038/s44259-024-00024-9 · Cited by 35 · see citing works
Song, Z., Zuo, L., Li, C., Tian, Y., & Wang, H. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.616792 · Cited by 34 · see citing works
Amor, D. R., & Gore, J. (2022) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2116954119 · Cited by 34 · see citing works
Gül, E., Younes, A. A., Huuskonen, J., Diawara, C., Nguyen, B. D., Maurer, L., Bakkeren, E., & Hardt, W. (2023) · Cell Host & Microbe · doi:10.1016/j.chom.2023.05.029 · Cited by 34 · see citing works
Tao, S., Chen, H., Li, N., Fang, Y., Yao, X., & Liang, W. (2022) · Infection and Drug Resistance · doi:10.2147/idr.s388354 · Cited by 33 · see citing works
Plasmid-mediated antimicrobial resistance in drinking water
Alawi, M., Velasco‐Torrijos, T., & Walsh, F. (2022) · Environmental Advances · doi:10.1016/j.envadv.2022.100191 · Cited by 32 · see citing works
Xu, J., Huang, J., Chen, L., Chen, M., Wen, X., Zhang, P., Li, S., Ma, B., Zou, Y., Wang, Y., et al. (2023) · Chemical Engineering Journal · doi:10.1016/j.cej.2023.144637 · Cited by 32 · see citing works
Zhou, S., Li, H., Wu, Z., Li, S., Cao, Z., Ma, B., Zou, Y., Zou, Y., Liu, Z., Wang, Y., et al. (2023) · Bioresource Technology · doi:10.1016/j.biortech.2023.129350 · Cited by 31 · see citing works
Alterations of fecal antibiotic resistome in COVID-19 patients after empirical antibiotic exposure
Kang, Y., Chen, S., Chen, Y., Tian, L., Wu, Q., Zheng, M., & Li, Z. (2021) · International Journal of Hygiene and Environmental Health · doi:10.1016/j.ijheh.2021.113882 · Cited by 31 · see citing works
Ivanova, V. A., Chernevskaya, E., Vasiluev, P. A., Ivanov, A. B., Tolstoganov, I., Shafranskaya, D. D., Игоревич, У. В., Korobeynikov, A., Razin, S. V., Nv, B., et al. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.770323 · Cited by 31 · see citing works
Liu, X., Xu, R., Wu, H., Xu, K., Zhang, W., Wang, Z., & Gong, W. (2023) · Environmental Science Nano · doi:10.1039/d2en01036d · Cited by 31 · see citing works
Models for Gut-Mediated Horizontal Gene Transfer by Bacterial Plasmid Conjugation
Ott, L. C., & Mellata, M. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.891548 · Cited by 32 · see citing works
The winding journey of conjugative plasmids toward a novel host cell
Fraikin, N., Couturier, A., & Lesterlin, C. (2024) · Current Opinion in Microbiology · doi:10.1016/j.mib.2024.102449 · Cited by 30 · see citing works
Novel Antibacterial Approaches and Therapeutic Strategies
Niño‐Vega, G. A., Ortiz-Ramírez, J. A., & López-Romero, E. (2025) · Antibiotics · doi:10.3390/antibiotics14040404 · Cited by 30 · see citing works
Liu, F., Luo, Y., Xu, T., Lin, H., Qiu, Y., & Li, B. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1371388 · Cited by 29 · see citing works
Sun, Z., Hong, W., Xue, C., & Dong, N. (2024) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2024.175971 · Cited by 31 · see citing works
Xu, R., Zhang, Y., Li, Y., Song, J., Liang, Y., Chen, F., Wei, X., Li, C., Li, C., Rensing, C., et al. (2024) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2024.134355 · Cited by 28 · see citing works
In situ, in vivo, and in vitro approaches for studying AMR plasmid conjugation in the gut microbiome
Kessler, C., Hou, J., Neo, O., & Buckner, M. M. C. (2022) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuac044 · Cited by 28 · see citing works
Liu, Q., Wen, X., Li, X., Zhong, S., Cao, Z., Zhang, X., Ma, B., Zou, Y., Zhang, N., Mi, J., et al. (2023) · Journal of Cleaner Production · doi:10.1016/j.jclepro.2023.137516 · Cited by 28 · see citing works
Cheng, J., Kolba, N., & Tako, E. (2023) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2023.2169857 · Cited by 27 · see citing works
Massive expansion of the pig gut virome based on global metagenomic mining
Mi, J., Jing, X., Ma, C., Yang, Y., Li, Y., Zhang, Y., Long, R., & Zheng, H. (2024) · npj Biofilms and Microbiomes · doi:10.1038/s41522-024-00554-0 · Cited by 28 · see citing works
The Raw Milk Microbiota from Semi-Subsistence Farms Characteristics by NGS Analysis Method
Hornik, B., Czarny, J., Staninska‐Pięta, J., Wolko, Ł., Cyplik, P., & Piotrowska‐Cyplik, A. (2021) · Molecules · doi:10.3390/molecules26165029 · Cited by 27 · see citing works
Zhang, Y., Fleur, A. S., & Feng, H. (2022) · Gut Microbes · doi:10.1080/19490976.2022.2052698 · Cited by 27 · see citing works
Muoghalu, C., Kaboggoza, H. C., Semiyaga, S., Lebu, S., Liu, C., Niwagaba, C. B., Nansubuga, F., & Manga, M. (2025) · Environmental Pollution · doi:10.1016/j.envpol.2025.126851 · Cited by 26 · see citing works
Muhummed, A. M., Lanker, K. C., Yersin, S., Zinsstag, J., & Vonaesch, P. (2025) · Microbiome · doi:10.1186/s40168-025-02231-6 · Cited by 27 · see citing works
Chen, X., He, Z., Zhao, J., Liao, M., Xue, Y., Zhou, J., Hoare, R., Monaghan, S. J., Wang, N., Pang, H., et al. (2022) · Frontiers in Marine Science · doi:10.3389/fmars.2021.762345 · Cited by 26 · see citing works
Zhang, T., Ji, Z., Li, J., & Yu, L. (2022) · Environmental Pollution · doi:10.1016/j.envpol.2022.119738 · Cited by 26 · see citing works
Machado, D., Barbosa, J. C., Almeida, D., Andrade, J. C., Freitas, A. C., & Gomes, A. (2022) · International Journal of Environmental Research and Public Health · doi:10.3390/ijerph19159152 · Cited by 26 · see citing works
Antimicrobial resistomes in food chain microbiomes
Yuan, M., Huang, Z., Malakar, P. K., Pan, Y., Zhao, Y., & Zhang, Z. (2023) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2023.2177607 · Cited by 26 · see citing works
Modulation of chicken gut microbiota for enhanced productivity and health: A review
Khasanah, H., Kusbianto, D. E., Purnamasari, L., Cruz, J. F. D., Widianingrum, D. C., & Hwang, S. G. (2024) · Veterinary World · doi:10.14202/vetworld.2024.1073-1083 · Cited by 25 · see citing works
Kasumba, I. N., Pulford, C. V., Perez-Sepulveda, B. M., Sen, S., Sayed, N., Permala-Booth, J., Livio, S., Heavens, D., Low, R., Hall, N., et al. (2021) · Clinical Infectious Diseases · doi:10.1093/cid/ciab051 · Cited by 25 · see citing works
Cui, T., Zhang, S., Ye, J., Gao, L., Zhan, M., & Yu, R. (2022) · Water Air & Soil Pollution · doi:10.1007/s11270-022-05597-7 · Cited by 26 · see citing works
Phan, A., Mijar, S., Harvey, C. M., & Biswas, D. (2025) · Microorganisms · doi:10.3390/microorganisms13081732 · Cited by 25 · see citing works
- Authors
- McInnes, R. S., McCallum, G. E., Lamberte, L. E., & van Schaik, W.
- Affiliations
- University of Birmingham (GB)
- Corresponding author
- Lamberte, Lisa E
- Venue
- Current Opinion in Microbiology
- Publisher
- Elsevier BV
- Published
- 2020-02
- Volume
- 53
- Pages
- 35-43
- ISSN
- 1369-5274 (ISSN-L)
- OpenAlex
- W3009269518
- Cited by
- 401
- References
- 83
- Citations by year
- 2026: 49 · 2025: 90 · 2024: 79 · 2023: 69 · 2022: 59 · 2021: 41 · 2020: 14
- FWCI
- 3.37
- Type
- journal article
- Language
- en
- Open access
- Licence
- Locations
- Current Opinion in Microbiology (publishedVersion)
- PubMed (publishedVersion)
- University of Birmingham Research Portal (University of Birmingham) (submittedVersion, cc-by-nc-nd)
- Funders
- Biotechnology and Biological Sciences Research Council
- Wellcome Trust
- Royal Society
- Medical Research Council
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Medicine › Antibiotic Resistance in Bacteria
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Physical Sciences › Environmental Science › Pollution › Pharmaceutical and Antibiotic Environmental Impacts
- Keywords
- horizontal gene transfer, antibiotic resistance genes, human gut microbiome, transduction, conjugation, antibiotic resistance spread, commensal bacteria, opportunistic pathogens
- MeSH terms
- Gastrointestinal Microbiome, Animals, Anti-Bacterial Agents, Bacteria, Bacterial Proteins, Humans, Gene Transfer, Horizontal, Drug Resistance, Bacterial
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review