Models for Gut-Mediated Horizontal Gene Transfer by Bacterial Plasmid Conjugation

Origins and evolution of antibiotic resistance

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The gut microbiota shapes intestinal immune responses during health and disease

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Gut biogeography of the bacterial microbiota

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Mechanisms of, and Barriers to, Horizontal Gene Transfer between Bacteria

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Dissemination of Antimicrobial Resistance in Microbial Ecosystems through Horizontal Gene Transfer

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Evidence for a clade of nematodes, arthropods and other moulting animals

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Host-Mediated Inflammation Disrupts the Intestinal Microbiota and Promotes the Overgrowth of Enterobacteriaceae

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SOS response promotes horizontal dissemination of antibiotic resistance genes

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Mobility of Plasmids

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Human intestinal bacteria as reservoirs for antibiotic resistance genes

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Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow

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The Impact of Food Bioactives on Health

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Studying plasmid horizontal transfer in situ: a critical review

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Gut microbiota-derived short-chain Fatty acids, T cells, and inflammation

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Antibiotics and the Gut Microbiota

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Integrative and Conjugative Elements (ICEs): What They Do and How They Work

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Gut microbiota disturbance during antibiotic therapy: a multi-omic approach

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Microbiome interactions shape host fitness

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Conjugative Plasmid Transfer in Gram-Positive Bacteria

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The role of microbiota in infectious disease

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Horizontal gene transfer in the human gastrointestinal tract: potential spread of antibiotic resistance genes

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Gut inflammation can boost horizontal gene transfer between pathogenic and commensal <i>Enterobacteriaceae</i>

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Antibiotic-Induced Alterations of the Gut Microbiota Alter Secondary Bile Acid Production and Allow for Clostridium difficile Spore Germination and Outgrowth in the Large Intestine

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Plasmid-Mediated Quinolone Resistance in Clinical Isolates of Escherichia coli from Shanghai, China

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Identification and classification of bacterial plasmids

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Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community

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Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids

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Evidence for Transfer of CMY-2 AmpC β-Lactamase Plasmids between Escherichia coli andSalmonella Isolates from Food Animals and Humans

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Microbiota-Induced Changes in Drosophila melanogaster Host Gene Expression and Gut Morphology

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Horizontal transfer of antibiotic resistance genes in the human gut microbiome

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Processing of plasmid DNA during bacterial conjugation

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Large-scale metagenomic-based study of antibiotic resistance in the environment.

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Towards an integrated model of bacterial conjugation

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Butyrate Enhances Disease Resistance of Chickens by Inducing Antimicrobial Host Defense Peptide Gene Expression

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The human microbiome as a reservoir of antimicrobial resistance

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oqxAB Encoding a Multidrug Efflux Pump in Human Clinical Isolates of Enterobacteriaceae

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Economic Burden of Psoriasis in the United States

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Food and human gut as reservoirs of transferable antibiotic resistance encoding genes

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Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut

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Spread of antibiotic resistance with food-borne pathogens

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Transferable Plasmid-Mediated Resistance to Streptomycin in Clinical Isolate of Yersinia pestis

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Escherichia coli ST131- H 22 as a Foodborne Uropathogen

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Gene content evolution in the arthropods

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The Role of Integrative and Conjugative Elements in Antibiotic Resistance Evolution

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Antibiotics in Early Life Alter the Gut Microbiome and Increase Disease Incidence in a Spontaneous Mouse Model of Autoimmune Insulin-Dependent Diabetes

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The Altered Schaedler Flora: Continued Applications of a Defined Murine Microbial Community

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Horizontal Gene Transfer Contributes to the Evolution of Arthropod Herbivory

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The hidden life of integrative and conjugative elements

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Origin and Prevalence of Campylobaeter jejuni in Poultry Processing

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Physiological state of Escherichia coli BJ4 growing in the large intestines of streptomycin-treated mice

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Horizontal gene transfer in human pathogens

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Selection for antimicrobial resistance is reduced when embedded in a natural microbial community

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Transferable Plasmid-Mediated Resistance to Linezolid Due to cfr in a Human Clinical Isolate of Enterococcus faecalis

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Plasmid-mediated resistance is going wild

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In vitro conjugal transfer of tetracycline resistance fromLactobacillusisolates to other Gram-positive bacteria

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The Drosophila melanogaster Gut Microbiota Provisions Thiamine to Its Host

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F conjugation: Back to the beginning

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Plasmid transfer in the animal intestine and other dynamic bacterial populations: the role of community structure and environment

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Modeling Host-Pathogen Interactions in the Context of the Microenvironment: Three-Dimensional Cell Culture Comes of Age

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Horizontal transfer of tet(M) and erm(B) resistance plasmids from food strains of Lactobacillus plantarum to Enterococcus faecalis JH2-2 in the gastrointestinal tract of gnotobiotic rats

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Evidence of Extensive DNA Transfer between Bacteroidales Species within the Human Gut

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The relationship among gut microbiota, short-chain fatty acids, and intestinal morphology of growing and healthy broilers

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The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems

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Integrative and conjugative elements and their hosts: composition, distribution and organization

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Effects of residual ethanol on the rate and degree of conversion of five experimental resins

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High‐frequency conjugative transfer of antibiotic resistance genes to Yersinia pestis in the flea midgut

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Facing a new challenge

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Unsaturated fatty acids are inhibitors of bacterial conjugation

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The human microbiome: A hot spot of microbial horizontal gene transfer

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Comparison of In Vitro Fermentation and Molecular Microbial Profiles of High-Fiber Feed Substrates Incubated with Chicken Cecal Inocula

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The functional basis of adaptive evolution in chemostats

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Intergeneric Transfer of Conjugative and Mobilizable Plasmids Harbored byEscherichia coliin the Gut of the Soil MicroarthropodFolsomia candida(Collembola)

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Reservoir Competence of the Lesser Mealworm (Coleoptera: Tenebrionidae) for Salmonella typhimurium (Eubacteriales: Enterobacteriaceae)

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Horizontal Transfer of a Multi-Drug Resistance Plasmid between Coliform Bacteria of Human and Bovine Origin in a Farm Environment

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Antibiotic Treatment of Pregnant Non‐Obese Diabetic Mice Leads to Altered Gut Microbiota and Intestinal Immunological Changes in the Offspring

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In Vivo Induction of Virulence and Antibiotic Resistance Transfer in Enterococcus faecalis Mediated by the Sex Pheromone-Sensing System of pCF10

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Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo

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Transfer of plasmid-mediated antibiotic resistance from streptococci to lactobacilli

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Synthetic Fatty Acids Prevent Plasmid-Mediated Horizontal Gene Transfer

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Regulation of conjugative transfer of plasmids and integrative conjugative elements

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Comprehensive analysis of chromosomal mobile genetic elements in the gut microbiome reveals phylum-level niche-adaptive gene pools

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An In Vitro Chicken Gut Model Demonstrates Transfer of a Multidrug Resistance Plasmid from Salmonella to Commensal Escherichia coli

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Reservoir Competence of Alphitobius diaperinus (Coleoptera: Tenebrionidae) for Escherichia coli (Eubacteriales: Enterobacteriaceae)

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Antibiotic-Induced, Increased Conjugative Transfer Is Common to Diverse Naturally Occurring ESBL Plasmids in Escherichia coli

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Highly efficient gene transfer in the mouse gut microbiota is enabled by the Incl2 conjugative plasmid TP114

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Characterization of the Contribution to Virulence of Three Large Plasmids of Avian Pathogenic Escherichia coli χ7122 (O78:K80:H9)

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Escherichia coli Isolate for Studying Colonization of the Mouse Intestine and Its Application to Two-Component Signaling Knockouts

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Horizontal Transfer of the Tetracycline Resistance Gene tetM Mediated by pCF10 Among Enterococcus faecalis in the House Fly (Musca domestica L.) Alimentary Canal

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Horizontal Transfer of Shiga Toxin and Antibiotic Resistance Genes Among Escherichia coli Strains in House Fly (Diptera: Muscidae) Gut

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The Transfer Of Antibiotic Resistance Between Strains Of Enterobacteria In Chicken, Calves And Pigs

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Meropenem stress drives lipid remodeling and resistance gene dissemination via outer membrane vesicles in carbapenem-resistant Klebsiella pneumoniae

Fan, F., Shi, Q., Chen, G., Zhan, H., Deng, S., Peng, Y., & Wei, L. (2026) · Current Research in Microbial Sciences · doi:10.1016/j.crmicr.2026.100616

Variation in conjugation frequencies of wastewater-derived multidrug-resistant E. coli influences predicted dynamics in quantitative risk models

Erokhina, K., Quon, H., Kajale, S. C., Djordjevic, S. P., Wyrsch, E. R., Hamilton, K. A., & Cytryn, E. J. (2026) · Water Research · doi:10.1016/j.watres.2026.126534

Trends in Streptococcus pneumoniae related lower respiratory infections and drug resistance among children under 5 from 1990 to 2021, and a predictive analysis for 2030

Liu, X., Mo, G., Sun, H., Guo, S., Chen, X., & Lan, Y. (2026) · The Italian Journal of Pediatrics/Italian journal of pediatrics · doi:10.1186/s13052-026-02309-3

Slaughtered pigs as reservoirs of One Health-relevant antimicrobial resistance genes in Klebsiella pneumoniae from Brazil

Azevedo, G. R., Scofano, A. S., Fialho, D. S., Costa, G. A., Aquino, M. H. C., Abreu, D. L. D. C., do Nascimento, E. R., & Dias, T. S. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1927798

Microbial Contamination and Antimicrobial Resistance in Ready-to-Eat Street Foods: Evidence from Nyamirambo–Biryogo, RwandaPreprint

Fabien, G., Habimana, E., Eric, R., Olive, D., Nkesiga, J., Dusabumuremyi, J. C., & Bahizi, M. (2026) · Research Square · doi:10.21203/rs.3.rs-10993593/v1

Environmental occurrence and dissemination of colistin resistance in contaminated aquatic systems: a systematic review of eight observational studies

Sinha, A., Murmu, J., Singh, S., Pal, A., Mallick, U., Mishra, P., Sahoo, K. C., Sahu, M. C., & Pati, D. S. (2026) · Frontiers in Antibiotics · doi:10.3389/frabi.2026.1970443

Dynamic changes of chicken gut microbiota and resistome during enrofloxacin treatment against multidrug-resistant Salmonella based on metagenomics

Chen, Y., Chu, J., Guo, Y., Farhan, M. H. R., Lu, X., Wei, H., Xie, C., Wang, X., Huang, L., & Cheng, G. (2026) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2026.143929

Prevention of Klebsiella pneumoniae antibiotic resistance plasmid dissemination by prophylactic or simultaneous CRISPR-Cas9 treatmentPreprint

Morros-Bernaus, C., Feakes, N., Oko, U., Cozens, K., van Houte, S., & Sünderhauf, D. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.10.29.762760

Highly efficient gene transfer in the mouse gut microbiota is enabled by the Incl2 conjugative plasmid TP114

Neil, K., Allard, N., Grenier, F., Burrus, V., & Rodrigue, S. (2020) · Communications Biology · doi:10.1038/s42003-020-01253-0 · Cited by 82 · see citing works

Molecular Mechanisms Influencing Bacterial Conjugation in the Intestinal Microbiota

Neil, K., Allard, N., & Rodrigue, S. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.673260 · Cited by 52 · see citing works

In situ, in vivo, and in vitro approaches for studying AMR plasmid conjugation in the gut microbiome

Kessler, C., Hou, J., Neo, O., & Buckner, M. M. C. (2022) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuac044 · Cited by 29 · see citing works

Factors and Mechanisms Influencing Conjugation In Vivo in the Gastrointestinal Tract Environment: A Review

Liu, W., Huang, Y., Zhang, H., Liu, Z., Huan, Q., Xiao, X., & Wang, Z. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24065919 · Cited by 31 · see citing works

Bacterial plasmid transfer in the gut: Regulation and inhibition

Ott, L. C. (2024) · doi:10.31274/td-20250502-257