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How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging

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The Human Connectome: A Structural Description of the Human Brain

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White matter integrity, fiber count, and other fallacies: The do's and don'ts of diffusion MRI

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A Bayesian model of shape and appearance for subcortical brain segmentation

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Robust determination of the fibre orientation distribution in diffusion MRI: Non-negativity constrained super-resolved spherical deconvolution

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Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution

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MRtrix: Diffusion tractography in crossing fiber regions

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Three‐dimensional magnetization‐prepared rapid gradient‐echo imaging (3D MP RAGE)

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Modified structural network backbone in the contralesional hemisphere chronically after stroke in rat brain

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Histological validation of per-bundle water diffusion metrics within a region of fiber crossing following axonal degeneration

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Cortical structural and functional coupling during development and implications for attention deficit hyperactivity disorder

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Fixel-based analysis reveals tau-related white matter changes in early stages of Alzheimer's disease

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Axonal loss in major sensorimotor tracts is associated with impaired motor performance in minimally disabled multiple sclerosis patients

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Forecasting brain activity based on models of spatiotemporal brain dynamics: A comparison of graph neural network architectures

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Amyloidosis and neurodegeneration result in distinct structural connectivity patterns in mild cognitive impairment

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A method for u-fiber quantification from 7 T diffusion-weighted MRI data tested in patients with nonlesional focal epilepsy

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How many streamlines are required for reliable probabilistic tractography? Solutions for microstructural measurements and neurosurgical planning

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Brain Structure Alterations in Poly-Drug Use: Reduced Cortical Thickness and White Matter Impairments in Regions Associated With Affective, Cognitive, and Motor Functions

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Bundle-Specific Axon Diameter Index as a New Contrast to Differentiate White Matter Tracts

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Motor pathway degeneration in young ataxia telangiectasia patients: A diffusion tractography study

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New Clinically Feasible 3T MRI Protocol to Discriminate Internal Brain Stem Anatomy

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Functional tractography of white matter by high angular resolution functional‐correlation imaging (HARFI)

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Quantifying nerve decussation abnormalities in the optic chiasm

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White matter fiber density abnormalities in cognitively normal adults at risk for late-onset Alzheimer's disease

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Distinct structure-function relationships across cortical regions and connectivity scales in the rat brain

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Functional and structural reorganization in brain tumors: a machine learning approach using desynchronized functional oscillations

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Structural connectome construction using constrained spherical deconvolution in multi-shell diffusion-weighted magnetic resonance imaging

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Deep Relational Reasoning for the Prediction of Language Impairment and Postoperative Seizure Outcome Using Preoperative DWI Connectome Data of Children With Focal Epilepsy

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Effects of Serotonin Transporter Gene Variation on Impulsivity Mediated by Default Mode Network: A Family Study of Depression

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Hemispheric Module-Specific Influence of the X Chromosome on White Matter Connectivity: Evidence from Girls with Turner Syndrome

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Tractogram Filtering of Anatomically Non-plausible Fibers with Geometric Deep Learning

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Structural and Functional Connectivity of Visual Cortex in Schizophrenia and Bipolar Disorder: A Graph-Theoretic Analysis

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Diffusion-regularized susceptibility tensor imaging (DRSTI) of tissue microstructures in the human brain

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Characterizing white matter alterations subject to clinical laterality in drug‐naïve de novo Parkinson's disease

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Development of white matter fiber covariance networks supports executive function in youth

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A ReliefF-SVM-based method for marking dopamine-based disease characteristics: A study on SWEDD and Parkinson’s disease

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Fixel Based Analysis Reveals Atypical White Matter Micro- and Macrostructure in Adults With Autism Spectrum Disorder: An Investigation of the Role of Biological Sex

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Inner Hemispheric and Interhemispheric Connectivity Balance in the Human Brain

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In vivo exploration of the connectivity between the subthalamic nucleus and the globus pallidus in the human brain using multi-fiber tractography

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Music impacts brain cortical microstructural maturation in very preterm infants: A longitudinal diffusion MR imaging study

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Structural Connectivity Remote From Lesions Correlates With Somatosensory Outcome Poststroke

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Cross-modal connectivity effects in age-related hearing loss

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White matter microstructural and morphometric alterations in autism: implications for intellectual capabilities

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Network structure-function coupling and neurocognition in cerebral small vessel disease

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Structural Neuroplastic Responses Preserve Functional Connectivity and Neurobehavioural Outcomes in Children Born Without Corpus Callosum

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Lip movements enhance speech representations and effective connectivity in auditory dorsal stream

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BNLoop-GAN: a multi-loop generative adversarial model on brain network learning to classify Alzheimer’s disease

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Altered White Matter Architecture in BDNF Met Carriers

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Modeling topographic regularity in structural brain connectivity with application to tractogram filtering

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Acceleration of three-dimensional diffusion magnetic resonance imaging using a kernel low-rank compressed sensing method

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Hierarchical microstructure informed tractography

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Structural connectivity changes in the cerebral pain matrix in burning mouth syndrome: a multi-shell, multi-tissue-constrained spherical deconvolution model analysis

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The structure of hippocampal circuitry relates to rapid category learning in humans

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Identifying the white matter structural network of motor reserve in early Parkinson's disease

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Fiber-specific structural properties relate to reading skills in children and adolescents

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Brain MRI detects early-stage alterations and disease progression in Friedreich ataxia

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Exploring individual fixel-based white matter abnormalities in epilepsy

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Complementary topology of maintenance and manipulation brain networks in working memory

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White matter connectivity reductions in the pre‐clinical continuum of psychosis: A connectome study

Oestreich, L., Randeniya, R., & Garrido, M. I. (2018) · Human Brain Mapping · doi:10.1002/hbm.24392 · Cited by 18

Constrained spherical deconvolution of nonspherically sampled diffusion MRI data

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Connectivity Matrices and Brain Graphs

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Reduced apparent fiber density in the white matter of premature-born adults

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Mapping connectomes with diffusion MRI: Deterministic or probabilistic tractography?

Smith, R. E., Calamante, F., & Connelly, A. (2019) · Magnetic Resonance in Medicine · doi:10.1002/mrm.27916 · Cited by 20

Impaired Glymphatic Clearance, Measured Using Diffusion Tensor Image Analysis Along the Perivascular Space ( DTI ‐ ALPS) , is Linked to Poor Cognitive Outcomes in Parkinson's Disease

Zarkali, A., Thomas, G. E. C., Paterson, R. W., Hannaway, N., Dobreva, I., Heslegrave, A., Veleva, E., Zetterberg, H., & Weil, R. S. (2025) · Movement Disorders · doi:10.1002/mds.30325 · Cited by 18

The Combination of Adaptive Convolutional Neural Network and Bag of Visual Words in Automatic Diagnosis of Third Molar Complications on Dental X-Ray Images

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Distinct fiber-specific white matter reductions pattern in early- and late-onset Alzheimer’s disease

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Physical fitness, cognition, and structural network efficiency of brain connections across the lifespan

Callow, D. D., & Smith, J. C. (2023) · Neuropsychologia · doi:10.1016/j.neuropsychologia.2023.108527 · Cited by 19

Can hubs of the human connectome be identified consistently with diffusion MRI?

Gajwani, M., Oldham, S., Pang, J. C. S., Arnatkevičiūtė, A., Tiego, J., Bellgrove, M. A., & Fornito, A. (2023) · Network Neuroscience · doi:10.1162/netn_a_00324 · Cited by 20

Tractometry of Human Visual White Matter Pathways in Health and Disease

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Differences in structural and functional networks between young adult and aged rat brains before and after stroke lesion simulations

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Fiber-specific white matter reductions in amyotrophic lateral sclerosis

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Microstructural profiles of thalamus and thalamocortical connectivity in patients with disorder of consciousness

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Reducing false positives in tractography with microstructural and anatomical priorsPreprint

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Structural-functional brain network coupling during cognitive demand reveals intelligence-relevant communication strategies

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Motor function and white matter connectivity in children cooled for neonatal encephalopathy

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Impact of long- and short-range fibre depletion on the cognitive deficits of fronto-temporal dementia

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Cognition’s dependence on functional network integrity with age is conditional on structural network integrity

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Childhood development of brain white matter myelin: a longitudinal T1w/T2w-ratio study

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Neuroimaging and plasma evidence of early white matter loss in Parkinson’s disease with poor outcomes

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Tutorial: a guide to diffusion MRI and structural connectomics

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Modeling Communication Processes in the Human Connectome through Cooperative Learning

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Post mortem high resolution diffusion MRI for large specimen imaging at 11.7 T with 3D segmented echo-planar imaging

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Longitudinal Changes After Amygdala Surgery for Intractable Aggressive Behavior: Clinical, Imaging Genetics, and Deformation-Based Morphometry Study—A Case Series

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Longitudinal fixel-based analysis reveals restoration of white matter alterations following balance training in young brain-injured patients

Liang, X., Yeh, C.-H., D., J. F. D., Poudel, G., Swinnen, S., & Caeyenberghs, K. (2021) · NeuroImage: Clinical · doi:10.1016/j.nicl.2021.102621 · Cited by 17

Multiparametric characterization of white matter alterations in early stage Huntington disease

Adanyeguh, I., Branzoli, F., Delorme, C., Méneret, A., Monin, M., Luton, M.-P., Durr, A., Sabidussi, E., & Mochel, F. (2021) · Scientific Reports · doi:10.1038/s41598-021-92532-1 · Cited by 13

Crossing muscle fibers of the human tongue resolved in vivo using constrained spherical deconvolution

Voskuilen, L., Mazzoli, V., Oudeman, J., Balm, A. J. M., van der Heijden, F., Froeling, M., de Win, M. M. L., Strijkers, G. J., Smeele, L. E., & Nederveen, A. J. (2019) · Journal of Magnetic Resonance Imaging · doi:10.1002/jmri.26609 · Cited by 17

Bilateral Structural Network Abnormalities in Epilepsy Associated With Bottom-of-Sulcus Dysplasia

Mito, R., Vaughan, D., Semmelroch, M., Connelly, A., & Jackson, G. (2021) · Neurology · doi:10.1212/wnl.0000000000013006 · Cited by 17

Structural Brain Connectivity Correlates with Outcome in Mild Traumatic Brain Injury

Roine, T., Mohammadian, M., Hirvonen, J., Kurki, T. J. I., Posti, J. P., Takala, R. S. K., Newcombe, V., Tallus, J., Katila, A. J., Maanpää, H.-R., et al. (2022) · Journal of Neurotrauma · doi:10.1089/neu.2021.0093 · Cited by 16

Repetitive Negative Thinking–Specific and –Nonspecific White Matter Tracts Engaged by Historical Psychosurgical Targets for Depression

Sánchez, S. M., Tsuchiyagaito, A., Kuplicki, R., Park, H., Postolski, I., Rohan, M. L., Paulus, M. P., & Guinjoan, S. M. (2023) · Biological Psychiatry · doi:10.1016/j.biopsych.2023.03.012 · Cited by 16

Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge

Girard, G., Rafael‐Patiño, J., Truffet, R., Aydogan, D. B., Adluru, N., Nair, V. A., Prabhakaran, V., Bendlin, B. B., Alexander, A. L., Bosticardo, S., et al. (2023) · NeuroImage · doi:10.1016/j.neuroimage.2023.120231 · Cited by 19

Hypercomplex Graph Neural Network: Towards Deep Intersection of Multi-Modal Brain Networks

Yang, Y., Ye, C., Cai, G., Song, K., Zhang, J., Xiang, Y., & Ma, T. (2024) · IEEE Journal of Biomedical and Health Informatics · doi:10.1109/jbhi.2024.3490664 · Cited by 18

The multiscale brain structural re-organization that occurs from childhood to adolescence correlates with cortical morphology maturation and functional specialization

He, Y., Zeng, D., Li, Q., Chu, L., Dong, X., Liang, X., Sun, L., Liao, X., Zhao, T., Chen, X., et al. (2025) · PLoS Biology · doi:10.1371/journal.pbio.3002710 · Cited by 18

A cautionary note on the use of SIFT in pathological connectomes

Zalesky, A., Sarwar, T., & Ramamohanarao, K. (2019) · Magnetic Resonance in Medicine · doi:10.1002/mrm.28037 · Cited by 17

White matter microstructure and connectivity in patients with obsessive‐compulsive disorder and their unaffected siblings

Dikmeer, N., Beşiroğlu, L., Biase, M. A. D., Zalesky, A., Kasal, M. I., Bektaş, A. B., Durmaz, E., Polat, S., Gelal, F. M., & Zorlu, N. (2020) · Acta Psychiatrica Scandinavica · doi:10.1111/acps.13241 · Cited by 16

Rest-activity functioning is related to white matter microarchitecture and modifiable risk factors in older adults at-risk for dementia.

Palmer, J., Duffy, S., Meares, S., Pye, J. E., Calamante, F., Cespedes, M. I., Hickie, I., & Naismith, S. (2021) · Sleep · doi:10.1093/sleep/zsab007 · Cited by 16

Revisiting brain rewiring and plasticity in children born without corpus callosum

Siffredi, V., Preti, M. G., Obertino, S., Leventer, R. J., WOOD, A. G., McIlroy, A., Anderson, V. A., Spencer‐Smith, M. M., & Ville, D. V. D. (2021) · Developmental Science · doi:10.1111/desc.13126 · Cited by 17

A critical review of connectome validation studies

Sarwar, T., Ramamohanarao, K., & Zalesky, A. (2021) · NMR in Biomedicine · doi:10.1002/nbm.4605 · Cited by 20

Building a tissue‐unbiased brain template of fiber orientation distribution and tractography with multimodal registration

Lv, J., Zeng, R., Ho, M. P., D’Souza, A., & Calamante, F. (2022) · Magnetic Resonance in Medicine · doi:10.1002/mrm.29496 · Cited by 19

Fiber-specific age-related differences in the white matter of healthy adults uncovered by fixel-based analysis.

Han, A., Dhollander, T., Sun, Y., Chad, J. A., & Chen, J. J. (2023) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2023.06.007 · Cited by 17

Structural Connectivity Analysis in Children with Segmental Callosal Agenesis

Severino, M., Tortora, D., Toselli, B., Uccella, S., Traverso, M., Morana, G., Capra, V., Veneselli, E., Fato, M., & Rossi, A. (2017) · American Journal of Neuroradiology · doi:10.3174/ajnr.a5043 · Cited by 16

Progression of Visual Pathway Degeneration in Primary Open-Angle Glaucoma: A Longitudinal Study

Haykal, S., Jansonius, N., & Cornelissen, F. (2021) · Frontiers in Human Neuroscience · doi:10.3389/fnhum.2021.630898 · Cited by 14

Stability and sensitivity of structural connectomes: effect of thresholding and filtering and demonstration in neurodegenerationPreprint

McColgan, P., Blom, T., Rees, G. E., Seunarine, K. K., Gregory, S., Johnson, E. B., Dürr, A., Roos, R. A. C., Scahill, R. I., Clark, C. A., et al. (2018) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/416826 · Cited by 16

Case Report on Deep Brain Stimulation Rescue After Suboptimal MR-Guided Focused Ultrasound Thalamotomy for Essential Tremor: A Tractography-Based Investigation

Saluja, S., Barbosa, D. A. N., Parker, J., Huang, Y. (., Jensen, M. R., Ngo, V., Santini, V., Pauly, K., Ghanouni, P., McNab, J., et al. (2020) · Frontiers in Human Neuroscience · doi:10.3389/fnhum.2020.00191 · Cited by 17

Fixel-based analysis and free water corrected DTI evaluation of hiv associated neurocognitive disorders.

Finkelstein, A., Faiyaz, A., Weber, M. T., Qiu, X., Uddin, M. N., Zhong, J., & Schifitto, G. (2021) · Frontiers in Neurology · doi:10.3389/fneur.2021.725059 · Cited by 15

Assessment of structural disconnections in gliomas: comparison of indirect and direct approaches

Silvestri, E., Villani, U., Moretto, M., Colpo, M., Salvalaggio, A., Anglani, M., Castellaro, M., Facchini, S., Monai, E., D’Avella, D., et al. (2022) · Brain Structure and Function · doi:10.1007/s00429-022-02494-x · Cited by 15

Hyperconnectivity and altered interactions of a nucleus accumbens network in post-stroke depression

Oestreich, L., Wright, P. K., & O'Sullivan, M. J. (2022) · Brain Communications · doi:10.1093/braincomms/fcac281 · Cited by 17

An epigenetic mechanism for differential maturation of amygdala–prefrontal connectivity in childhood socio-emotional development

Skyberg, A. M., Newman, B. T., Graves, A. J., Goldstein, A. M., Brindley, S. R., Kim, M., Druzgal, T. J., Connelly, J. J., & Morris, J. P. (2023) · Translational Psychiatry · doi:10.1038/s41398-023-02380-y · Cited by 17

Microstructural mapping of neural pathways in Alzheimer's disease using macrostructure‐informed normative tractometry

Feng, Y., Chandio, B. Q., Villalón‐Reina, J. E., Thomopoulos, S. I., Nir, T. M., Benavidez, S. M., Laltoo, E., Chattopadhyay, T., Joshi, H., Venkatasubramanian, G., et al. (2024) · Alzheimer s & Dementia · doi:10.1002/alz.14371 · Cited by 16

Randomized iterative spherical‐deconvolution informed tractogram filtering

Hain, A., Jörgens, D., & Moreno, R. (2023) · NeuroImage · doi:10.1016/j.neuroimage.2023.120248 · Cited by 6

The effects of SIFT on the reproducibility and biological accuracy of the structural connectome

Smith, R. E., Tournier, J.-D., Calamante, F., & Connelly, A. (2015) · NeuroImage · doi:10.1016/j.neuroimage.2014.10.004 · Cited by 266

SIFT2: Enabling dense quantitative assessment of brain white matter connectivity using streamlines tractography

Smith, R. E., Tournier, J., Calamante, F., & Connelly, A. (2015) · NeuroImage · doi:10.1016/j.neuroimage.2015.06.092 · Cited by 770

Improving Tractography Accuracy Using Dynamic Filtering

Battocchio, M., Schiavi, S., Descoteaux, M., & Daducci, A. (2021) · Mathematics and visualization · doi:10.1007/978-3-030-73018-5_4 · Cited by 4

Mapping connectomes with diffusion MRI: Deterministic or probabilistic tractography?

Smith, R. E., Calamante, F., & Connelly, A. (2019) · Magnetic Resonance in Medicine · doi:10.1002/mrm.27916 · Cited by 20