Removing artefacts from TMS-EEG recordings using independent component analysis: importance for assessing prefrontal and motor cortex network properties
Abstract
Introduction The combination of transcranial magnetic stimulation and electroencephalography (TMS-EEG) is emerging as a powerful tool for causally investigating cortical mechanisms and networks. However, various artefacts contaminate TMS-EEG recordings, particularly over regions such as the dorsolateral prefrontal cortex (DLPFC). The aim of this study was to substantiate removal of artefacts from TMS-EEG recordings following stimulation of the DLPFC and motor cortex using independent component analysis (ICA). Methods 36 healthy volunteers (30.8 ± 9 years, 9 female) received 75 single TMS pulses to the left DLPFC or left motor cortex while EEG was recorded from 57 electrodes. A subset of 9 volunteers also received 50 sham pulses. The large TMS artefact and early muscle activity (-2 to ~15 ms) were removed using interpolation and the remaining EEG signal was processed in two separate ICA runs using the FastICA algorithm. Five sub-types of TMS-related artefacts were manually identified: remaining muscle artefacts, decay artefacts, blink artefacts, auditory-evoked potentials and other noise-related artefacts. The cause of proposed blink and auditory-evoked potentials was assessed by concatenating known artefacts (i.e. voluntary blinks or auditory-evoked potentials resulting from sham TMS) to the TMS trials before ICA and evaluating grouping of resultant independent components (ICs). Finally, we assessed the effect of removing specific artefact types on TMS-evoked potentials (TEPs) and TMS-evoked oscillations. Results Over DLPFC, ICs from proposed muscle and decay artefacts correlated with TMS-evoked muscle activity size, whereas proposed TMS-evoked blink ICs combined with voluntary blinks and auditory ICs with auditory-evoked potentials from sham TMS. Individual artefact sub-types characteristically distorted each measure of DLPFC function across the scalp. When free of artefact, TEPs and TMS-evoked oscillations could be measured following DLPFC stimulation. Importantly, characteristic TEPs following motor cortex stimulation (N15, P30, N45, P60, N100) could be recovered from artefactual data, corroborating the reliability of ICA-based artefact correction. Conclusions Various different artefacts contaminate TMS-EEG recordings over the DLPFC and motor cortex. However, these artefacts can be removed with apparent minimal impact on neural activity using ICA, allowing the study of TMS-evoked cortical network properties.
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During TMS-EEG, participants listened to white noise through intra-auricular earphones to reduce the influence of auditory processing of the TMS click.
“During TMS-EEG, participants listened to white noise through intra-auricular earphones (Etymotic Research, ER3-14A, USA) to reduce the influence of auditory processing of the TMS click (Rogasch et al., 2014).”
From Investigation of neurobiological responses to theta burst stimulation during recovery from mild traumatic brain injury (mTBI) (2023) · cites this paper as Rogasch et al., 2014
Both rounds of component rejection following FastICA used a semiautomated artefact detection algorithm based on previous research and the TESA toolbox.
“Both rounds of component rejection following FastICA utilised a semiautomated artefact detection algorithm, based on previous research (Rogasch et al., 2014) and using TESA toolbox (Rogasch et al., 2017).”
From Investigation of neurobiological responses to theta burst stimulation during recovery from mild traumatic brain injury (mTBI) (2023) · cites this paper as Rogasch et al., 2014
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Self-citationTMS-EEG signatures of glutamatergic neurotransmission in human cortex
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Self-citationRemoval of Muscle Artifacts From the EEG: A Review and Recommendations
Chen, X., Xu, X., Liu, A., Lee, S., Chen, X. '., Zhang, X., McKeown, M. J., & Wang, Z. J. (2019) · IEEE Sensors Journal · doi:10.1109/jsen.2019.2906572 · Cited by 133 · see citing works
Measuring Brain Stimulation Induced Changes in Cortical Properties Using TMS-EEG
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Self-citationTAAC - TMS Adaptable Auditory Control: A universal tool to mask TMS clicks
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Brain responsivity provides an individual readout for motor recovery after stroke
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Recovering TMS-evoked EEG responses masked by muscle artifacts
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Self-citationEffects of antiepileptic drugs on cortical excitability in humans: A TMS‐EMG and TMS‐EEG study
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Effects of pulse width, waveform and current direction in the cortex: A combined cTMS-EEG study
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Self-citationARTIST: A fully automated artifact rejection algorithm for single‐pulse TMS‐EEG data
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Self-citationVariability and Predictors of Response to Continuous Theta Burst Stimulation: A TMS-EEG Study
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Survey on Brain-Computer Interface
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Lamotrigine and levetiracetam exert a similar modulation of TMS‐evoked EEG potentials
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Self-citationTranscranial Evoked Potentials Can Be Reliably Recorded with Active Electrodes
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TMS-evoked long-lasting artefacts: A new adaptive algorithm for EEG signal correction
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Self-citationRemoving artifacts from TMS-evoked EEG: A methods review and a unifying theoretical framework
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Dealing with artifacts in TMS-evoked EEG
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Self-citationCortical inhibition assessed using paired-pulse TMS-EEG is increased in older adults
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Self-citationMotor Cortical Network Excitability in Parkinson's Disease
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Identifying novel biomarkers with TMS-EEG – Methodological possibilities and challenges
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Self-citationTranscranial Magnetic Stimulation–Electroencephalography for Biomarker Discovery in Psychiatry
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Self-citationOscillatory TMS-EEG-Responses as a Measure of the Cortical Excitability Threshold
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Pharmacological mechanisms of interhemispheric signal propagation: a TMS-EEG study
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Self-citationTMS-EEG perturbation biomarkers for Alzheimer’s disease patients classification
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Intracortical Inhibition and Surround Inhibition in the Motor Cortex: A TMS-EEG Study
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Dose-response of intermittent theta burst stimulation of the prefrontal cortex: A TMS-EEG study
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Self-citationResting Motor Threshold, MEP and TEP Variability During Daytime
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The influence of endogenous estrogen on transcranial direct current stimulation: A preliminary study
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Self-citationTMS as a pharmacodynamic indicator of cortical activity of a novel anti‐epileptic drug, XEN1101
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A structured ICA-based process for removing auditory evoked potentials
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Single and paired pulse transcranial magnetic stimulation in drug naïve epilepsy.
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Assessing cerebellar-cortical connectivity using concurrent TMS-EEG: a feasibility study
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Self-citationBridging the gap: TMS-EEG from lab to clinic
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Assessing effective connectivity of the cerebellum with cerebral cortex using TMS-EEG
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- Authors
- Rogasch, N. C., Thomson, R. H., Farzan, F., Fitzgibbon, B. M., Bailey, N. W., Hernandez-Pavon, J. C., Daskalakis, Z. J., & Fitzgerald, P. B.
- Affiliations
- The Alfred Hospital (AU)
- Centre for Addiction and Mental Health (CA)
- Aalto University (FI)
- Corresponding author
- Rogasch, Nigel C.
- ORCID
- Venue
- NeuroImage
- Publisher
- Elsevier BV
- Published
- 2014-11
- Volume
- 101
- Pages
- 425-439
- ISSN
- 1053-8119 (ISSN-L)
- OpenAlex
- W1969040087
- Cited by
- 309
- References
- 77
- Citations by year
- 2026: 34 · 2025: 28 · 2024: 25 · 2023: 33 · 2022: 36 · 2021: 34 · 2020: 18 · 2019: 26 · 2018: 26 · 2017: 22 · 2016: 19 · 2015: 7 · 2014: 1
- FWCI
- 7.89
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- NeuroImage (publishedVersion)
- PubMed (publishedVersion)
- Adelaide Research & Scholarship (AR&S) (University of Adelaide) (submittedVersion)
- Funders
- Pfizer
- BrainsWay
- National Health and Medical Research Council
- National Medical Research Council
- Topics
- Life Sciences › Neuroscience › Neurology › Transcranial Magnetic Stimulation Studies
- Life Sciences › Neuroscience › Cognitive Neuroscience › EEG and Brain-Computer Interfaces
- Physical Sciences › Computer Science › Signal Processing › Blind Source Separation Techniques
- Keywords
- TMS-EEG, artifact removal, independent component analysis, TMS-evoked potentials, dorsolateral prefrontal cortex, motor cortex, auditory evoked potentials, FastICA, EEG signal processing
- MeSH terms
- Adult, Data Interpretation, Statistical, Electroencephalography, Evoked Potentials, Female, Humans, Male, Motor Cortex, Artifacts, Prefrontal Cortex, Transcranial Magnetic Stimulation, Young Adult
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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