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Sex-Specific Role for the Long Non-coding RNA LINC00473 in Depression
Open accessAbstract
Depression is a common disorder that affects women at twice the rate of men. Here, we report that long non-coding RNAs (lncRNAs), a recently discovered class of regulatory transcripts, represent about one-third of the differentially expressed genes in the brains of depressed humans and display complex region- and sex-specific patterns of regulation. We identified the primate-specific, neuronal-enriched gene LINC00473 as downregulated in prefrontal cortex (PFC) of depressed females but not males. Using viral-mediated gene transfer to express LINC00473 in adult mouse PFC neurons, we mirrored the human sex-specific phenotype by inducing stress resilience solely in female mice. This sex-specific phenotype was accompanied by changes in synaptic function and gene expression selectively in female mice and, along with studies of human neuron-like cells in culture, implicates LINC00473 as a CREB effector. Together, our studies identify LINC00473 as a female-specific driver of stress resilience that is aberrant in female depression.
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“Using whole-genome sequencing, a recent study found that lncRNAs accounted for 30% of the differences between patients with depression and control populations.311”
From Epigenetic regulation in major depression and other stress-related disorders: molecular mechanisms, clinical relevance and therapeutic potential (2023) · cites this paper as [311]
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Malki, K., Lourdusamy, A., Binder, E., Paya-Cano, J. L., Sluyter, F., Craig, I., Keers, R., McGuffin, P., Uher, R., & Schalkwyk, L. C. (2012) · Pharmacogenetics and Genomics · doi:10.1097/fpc.0b013e328356fa90 · Cited by 34
Zeng, Y., Navarro, P., Shirali, M., Howard, D. M., Adams, M. J., Hall, L. S., Clarke, T., Thomson, P. A., Smith, B. H., Murray, A. D., et al. (2016) · Biological Psychiatry · doi:10.1016/j.biopsych.2016.12.012 · Cited by 32
Pb, H., Xj, J., Zhang, M., & Ly, G. (2018) · PubMed · doi:10.26355/eurrev_201811_16267 · Cited by 30
MacMullen, C., Vick, K. A., Pacifico, R., Fallahi‐Sichani, M., & Davis, R. (2016) · Translational Psychiatry · doi:10.1038/tp.2016.3 · Cited by 27
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Bai, J., Wy, Z., Li, W.-J., Zw, Y., & Jiang, D.-Q. (2019) · PubMed · doi:10.26355/eurrev_201904_17705 · Cited by 20
The molecular basis for sex differences in depression susceptibility
Issler, O., & Nestler, E. J. (2018) · Current Opinion in Behavioral Sciences · doi:10.1016/j.cobeha.2017.12.019 · Cited by 19
Self-citationDelacrétaz, A., Preisig, M., Vandenberghe, F., Saigí-Morgui, N., Quteineh, L., Choong, E., Gholam‐Rezaee, M., Kutalik, Z., Magistretti, P. J., Aubry, J., et al. (2015) · PLoS ONE · doi:10.1371/journal.pone.0139155 · Cited by 18
Deletion of Rictor in catecholaminergic neurons alters locomotor activity and ingestive behavior
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2 of the 105 references couldn’t be matched to a known paper.
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Yuan, M., Yang, B., Rothschild, G., Mann, J. J., Sanford, L. D., Tang, X., Huang, C., Wang, C., & Zhang, W. (2023) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-023-01519-z · Cited by 246
Cheng, J., Hu, H., Ju, Y., Liu, J., Wang, M., Liu, B., & Zhang, Y. (2024) · General Psychiatry · doi:10.1136/gpsych-2023-101374 · Cited by 234
Neurobiological basis of stress resilience
Nestler, E. J., & Russo, S. J. (2024) · Neuron · doi:10.1016/j.neuron.2024.05.001 · Cited by 148
Self-citationDevelopmental dynamics of RNA translation in the human brain
Duffy, E. E., Finander, B., Choi, G., Carter, A. C., Pritišanac, I., Alam, A., Luria, V., Karger, A., Phu, W., Sherman, M. A., et al. (2022) · Nature Neuroscience · doi:10.1038/s41593-022-01164-9 · Cited by 96
Large-Scale Transcriptomics Studies Provide Insight Into Sex Differences in Depression
Seney, M. L., Glausier, J. R., & Sibille, E. L. (2021) · Biological Psychiatry · doi:10.1016/j.biopsych.2020.12.025 · Cited by 100
Metadata
- Authors
- Issler, O., van der Zee, Y. Y., Ramakrishnan, A., Wang, J., Tan, C., Loh, Y.-H. E., Purushothaman, I., Walker, D. M., Lorsch, Z. S., Hamilton, P. J., Peña, C. J., Flaherty, E., Hartley, B. J., Torres-Berrío, A., Parise, E. M., Kronman, H., Duffy, J. E., Estill, M. S., Calipari, E. S., Labonté, B., Neve, R. L., Tamminga, C. A., Brennand, K. J., Dong, Y., Shen, L., & Nestler, E. J.
- Affiliations
- Icahn School of Medicine at Mount Sinai (US)
- Maastricht University (NL)
- University of Pittsburgh (US)
- The University of Texas Southwestern Medical Center (US)
- Massachusetts General Hospital (US)
- Corresponding author
- Nestler, Eric J.
- ORCID
- Issler, Orna
- van der Zee, Yentl Y.
- Ramakrishnan, Aarthi
- Wang, Junshi
- Tan, Chunfeng
- Loh, Yong-Hwee E.
- Walker, Deena M.
- Lorsch, Zachary S.
- Hamilton, Peter J.
- Peña, Catherine J.
- Flaherty, Erin
- Parise, Eric M.
- Kronman, Hope
- Estill, Molly S.
- Calipari, Erin S.
- Neve, Rachael L.
- Tamminga, Carol A.
- Brennand, Kristen J.
- Dong, Yan
- Shen, Li
- Nestler, Eric J.
- Venue
- Neuron
- Publisher
- Elsevier BV
- Published
- 2020-06
- Volume
- 106
- Issue
- 6
- Pages
- 912-926.e5
- ISSN
- 0896-6273 (ISSN-L)
- PMC
- PMC7305959
- OpenAlex
- W3017236879
- Cited by
- 156
- References
- 105
- Citations by year
- 2026: 15 · 2025: 24 · 2024: 25 · 2023: 32 · 2022: 25 · 2021: 27 · 2020: 8
- FWCI
- 13.79
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Neuron (publishedVersion)
- PubMed (publishedVersion)
- Research Publications (Maastricht University) (publishedVersion, other-oa)
- PubMed Central (acceptedVersion)
- Research Publications (Maastricht University) (submittedVersion, other-oa)
- Funders
- Hope for Depression Research Foundation
- National Institute of Mental Health
- Topics
- Health Sciences › Medicine › Pharmacology (medical) › Treatment of Major Depression
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer-related molecular mechanisms research
- Life Sciences › Neuroscience › Behavioral Neuroscience › Stress Responses and Cortisol
- Keywords
- LINC00473, long non-coding RNA, depression, sex differences, stress resilience, prefrontal cortex, depression in women, CREB, synaptic function, neuronal gene expression
- MeSH terms
- RNA-Seq, Adult, Aged, Aged, 80 and over, Animals, Behavior, Animal, Depression, Major Depressive Disorder, Depressive Disorder, Major, Female, Humans, Male, Mice, Transgenic, Middle Aged, Neurons, Sex Factors, Stress, Psychological, Down-Regulation, Prefrontal Cortex, Mice, Resilience, Psychological, Young Adult, RNA, Long Noncoding
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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